CmoCh11G012240 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh11G012240
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description30S ribosomal protein S3, chloroplastic
LocationCmo_Chr11 : 7428566 .. 7429719 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAAGAAGATAAAAAAGAATCCATCTACAGAAGTATACGCTTTAGGTCAACATATATGTATGTCCCCTCACAAAGCGCGAAGGGTAATTGATCAGATTCGTGGCCGTTCCTACTACGAAACACTGGTAATACTCAAACTCATGCCTTATCGAGCATGTTATCCTATTTTTGATTTGGTTTATTCGGCAGCAGCAAATGCTCGTTGCAATATGGGTTTCAACGAAGCAGATTTAGTCATTAGTAAAGCGGAAGTCAACCAAAGTACTACTGTGAAAAAATTAAAACCTCGAGCTCGAGGGCGAAGTTATCCCATAAAACGACCCACTTGTTCTATAACTATTGTATTGAAAGATACACTTTTGTCTGAGTTTTCTTCAGACAAGTTGAAAAGATACCAATACAACATATTAGACTTAAACAAACCTGATGGATGGATAACGAAAGAAAAGTACCCAGATATGACGTCTTATGACATGTATAAGAATGGGGGATTATGGGACAAAAAATAAATCCACTCGGTTTTAGACTTGGTGTAACCCAAGGGCATCATTCTCTTTGGTTTGCACACCCCAAAAAATATTCCGAAGGTTTACAAGAAGATCAAAAAATACGAGATTGTATCCGGAATTTTGTACAAAAAAACATGACAAGAGTCTCTGGTGTTGAGGGAATTGCACGTATCGAAATTCAAAAAAGAATTGATCTTATTCAAGTGATAATCTTTATGGGATTCCCAAAGTTATTAATAGAAGGTGGGTCTCGAAAAATCGAAGAATTACAGATGAATGTACAAAAAGAATTAAATTCTGTGAACCGAAAACTCAACATTGCTATTACAAGAATAGCAAACCCTTATGGACACCCTAATATTCTCGCAGAATTTATAGCCGGACAATTACAGAATAGAGTTTCATTTCGCAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCGGGTACAAAGGGAATTCAAGTACAAATTGCCGGACGTATAGACGGAAAAGAAATTGCACGTGTCGAATGGATCAGAGAAGGAAGGGTTCCTCTACAAACCATTCAAGCTAAAATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGGGTATTAGGCATAAAAATTTGGATATTTGTAGACGAGCAATAA

mRNA sequence

ATGATAAAGAAGATAAAAAAGAATCCATCTACAGAAGTATACGCTTTAGGTCAACATATATGTATGTCCCCTCACAAAGCGCGAAGGGTAATTGATCAGATTCGTGGCCGTTCCTACTACGAAACACTGGTAATACTCAAACTCATGCCTTATCGAGCATGTTATCCTATTTTTGATTTGGTTTATTCGGCAGCAGCAAATGCTCGTTGCAATATGGGTTTCAACGAAGCAGATTTAGTCATTAGTAAAGCGGAAGTCAACCAAAGTACTACTGTGAAAAAATTAAAACCTCGAGCTCGAGGGCGAAGTTATCCCATAAAACGACCCACTTGTTCTATAACTATTGTATTGAAAGATACACTTTTGTCTGAGTTTTCTTCAGACAAGTTGAAAAGATACCAATACAACATATTAGACTTAAACAAACCTGATGGATGGATAACGAAAGAAAAGTACCCAGATATGACGTCTTATGACATACTTGGTGTAACCCAAGGGCATCATTCTCTTTGGTTTGCACACCCCAAAAAATATTCCGAAGGTTTACAAGAAGATCAAAAAATACGAGATTGTATCCGGAATTTTGTACAAAAAAACATGACAAGAGTCTCTGGTGTTGAGGGAATTGCACGTATCGAAATTCAAAAAAGAATTGATCTTATTCAAGTGATAATCTTTATGGGATTCCCAAAGTTATTAATAGAAGGTGGGTCTCGAAAAATCGAAGAATTACAGATGAATGTACAAAAAGAATTAAATTCTGTGAACCGAAAACTCAACATTGCTATTACAAGAATAGCAAACCCTTATGGACACCCTAATATTCTCGCAGAATTTATAGCCGGACAATTACAGAATAGAGTTTCATTTCGCAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCGGGTACAAAGGGAATTCAAGTACAAATTGCCGGACGTATAGACGGAAAAGAAATTGCACGTGTCGAATGGATCAGAGAAGGAAGGGTTCCTCTACAAACCATTCAAGCTAAAATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGGGTATTAGGCATAAAAATTTGGATATTTGTAGACGAGCAATAA

Coding sequence (CDS)

ATGATAAAGAAGATAAAAAAGAATCCATCTACAGAAGTATACGCTTTAGGTCAACATATATGTATGTCCCCTCACAAAGCGCGAAGGGTAATTGATCAGATTCGTGGCCGTTCCTACTACGAAACACTGGTAATACTCAAACTCATGCCTTATCGAGCATGTTATCCTATTTTTGATTTGGTTTATTCGGCAGCAGCAAATGCTCGTTGCAATATGGGTTTCAACGAAGCAGATTTAGTCATTAGTAAAGCGGAAGTCAACCAAAGTACTACTGTGAAAAAATTAAAACCTCGAGCTCGAGGGCGAAGTTATCCCATAAAACGACCCACTTGTTCTATAACTATTGTATTGAAAGATACACTTTTGTCTGAGTTTTCTTCAGACAAGTTGAAAAGATACCAATACAACATATTAGACTTAAACAAACCTGATGGATGGATAACGAAAGAAAAGTACCCAGATATGACGTCTTATGACATACTTGGTGTAACCCAAGGGCATCATTCTCTTTGGTTTGCACACCCCAAAAAATATTCCGAAGGTTTACAAGAAGATCAAAAAATACGAGATTGTATCCGGAATTTTGTACAAAAAAACATGACAAGAGTCTCTGGTGTTGAGGGAATTGCACGTATCGAAATTCAAAAAAGAATTGATCTTATTCAAGTGATAATCTTTATGGGATTCCCAAAGTTATTAATAGAAGGTGGGTCTCGAAAAATCGAAGAATTACAGATGAATGTACAAAAAGAATTAAATTCTGTGAACCGAAAACTCAACATTGCTATTACAAGAATAGCAAACCCTTATGGACACCCTAATATTCTCGCAGAATTTATAGCCGGACAATTACAGAATAGAGTTTCATTTCGCAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCGGGTACAAAGGGAATTCAAGTACAAATTGCCGGACGTATAGACGGAAAAGAAATTGCACGTGTCGAATGGATCAGAGAAGGAAGGGTTCCTCTACAAACCATTCAAGCTAAAATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGGGTATTAGGCATAAAAATTTGGATATTTGTAGACGAGCAATAA
Homology
[Close]
BLAST of CmoCh11G012240 vs. Swiss-Prot
Match: RR3_CUCSA (30S ribosomal protein S3, chloroplastic OS=Cucumis sativus GN=rps3 PE=3 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 9.5e-107
Identity = 191/207 (92.27%), Postives = 199/207 (96.14%), Query Frame = 1 

Query: 161 LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDL 220
           LG TQGHHSLWFAHPKKYSEGLQEDQKIRDCI+N+VQKNM   SGVEGIARIEIQKRIDL
Sbjct: 12  LGATQGHHSLWFAHPKKYSEGLQEDQKIRDCIQNYVQKNMRIFSGVEGIARIEIQKRIDL 71

Query: 221 IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI 280
           IQVIIFMGFPKL+I+ GSRKIEELQ+NVQKE NS NRKLNIAITRI NPYGHPNILAEFI
Sbjct: 72  IQVIIFMGFPKLVIDDGSRKIEELQINVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFI 131

Query: 281 AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQA 340
           AGQL+NRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTI+A
Sbjct: 132 AGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRA 191

Query: 341 KIDYCCYPVRTIYGVLGIKIWIFVDEQ 368
           KIDYCCYPVRTIYG+LGIKIWIFVDEQ
Sbjct: 192 KIDYCCYPVRTIYGILGIKIWIFVDEQ 218

[Close]
BLAST of CmoCh11G012240 vs. Swiss-Prot
Match: RR3_VITVI (30S ribosomal protein S3, chloroplastic OS=Vitis vinifera GN=rps3 PE=3 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 3.9e-100
Identity = 182/207 (87.92%), Postives = 193/207 (93.24%), Query Frame = 1 

Query: 161 LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDL 220
           LG TQGHHSLWFA PK YS+GLQEDQKIRDCI+N+VQKN+   SGVEGIARIEIQKRIDL
Sbjct: 12  LGTTQGHHSLWFAQPKNYSKGLQEDQKIRDCIKNYVQKNIRISSGVEGIARIEIQKRIDL 71

Query: 221 IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI 280
           IQVII+MGFPKLL+EG  R+IEELQMNVQKELN VNRKLNIAITRI  PYGHPNILAEFI
Sbjct: 72  IQVIIYMGFPKLLVEGKPRRIEELQMNVQKELNYVNRKLNIAITRITKPYGHPNILAEFI 131

Query: 281 AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQA 340
           AGQL+NRVSFRKA+KKAIELTEQA TKGIQVQIAGRIDGKEIARVEWIREGRVPLQTI+A
Sbjct: 132 AGQLRNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRA 191

Query: 341 KIDYCCYPVRTIYGVLGIKIWIFVDEQ 368
           KIDYC Y VRTIYGVLGIKIWIFVDE+
Sbjct: 192 KIDYCSYRVRTIYGVLGIKIWIFVDEE 218

[Close]
BLAST of CmoCh11G012240 vs. Swiss-Prot
Match: RR3_ATRBE (30S ribosomal protein S3, chloroplastic OS=Atropa belladonna GN=rps3 PE=3 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 4.3e-99
Identity = 180/207 (86.96%), Postives = 191/207 (92.27%), Query Frame = 1 

Query: 161 LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDL 220
           LG TQGHHSLWF+ PK YSEGLQEDQKIRDCI+N+VQKNM   SGVEGIARIEIQKRIDL
Sbjct: 12  LGTTQGHHSLWFSQPKNYSEGLQEDQKIRDCIKNYVQKNMRTSSGVEGIARIEIQKRIDL 71

Query: 221 IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI 280
           IQVIIFMGFPKLLIE   R IEELQM +QKELN VNRKLNIA+TRIA PYG+PNILAEFI
Sbjct: 72  IQVIIFMGFPKLLIESRPRGIEELQMTLQKELNCVNRKLNIAVTRIAKPYGNPNILAEFI 131

Query: 281 AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQA 340
           AGQL+NRVSFRKAMKKAIELTEQA TKGIQ+QIAGRIDGKEIARVEWIREGRVPLQTI+A
Sbjct: 132 AGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRA 191

Query: 341 KIDYCCYPVRTIYGVLGIKIWIFVDEQ 368
           KIDYC Y VRTIYGVLGIKIWIF+DE+
Sbjct: 192 KIDYCAYTVRTIYGVLGIKIWIFLDEE 218

[Close]
BLAST of CmoCh11G012240 vs. Swiss-Prot
Match: RR3_CAPBU (30S ribosomal protein S3, chloroplastic OS=Capsella bursa-pastoris GN=rps3 PE=3 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 4.3e-99
Identity = 179/207 (86.47%), Postives = 193/207 (93.24%), Query Frame = 1 

Query: 161 LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDL 220
           LG TQ HHSLWFA PKKYSEGL+ED+KIRDCI+N+VQKN+   SG+EGIARIEIQKRIDL
Sbjct: 12  LGTTQSHHSLWFAQPKKYSEGLEEDKKIRDCIKNYVQKNIRISSGMEGIARIEIQKRIDL 71

Query: 221 IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI 280
           IQ+II+MGFPKLLIE   R++EELQMNVQKELN VNRKLNIAITRI+NPYG PNILAEFI
Sbjct: 72  IQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRISNPYGDPNILAEFI 131

Query: 281 AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQA 340
           AGQL+NRVSFRKAMKKAIELTEQA TKGIQVQIAGRIDGKEIARVEWIREGRVPLQTI+A
Sbjct: 132 AGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEA 191

Query: 341 KIDYCCYPVRTIYGVLGIKIWIFVDEQ 368
           KIDYC Y VRTIYGVLGIKIWIFVDE+
Sbjct: 192 KIDYCSYTVRTIYGVLGIKIWIFVDEE 218

[Close]
BLAST of CmoCh11G012240 vs. Swiss-Prot
Match: RR3_OLIPU (30S ribosomal protein S3, chloroplastic OS=Olimarabidopsis pumila GN=rps3 PE=3 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 4.3e-99
Identity = 179/207 (86.47%), Postives = 193/207 (93.24%), Query Frame = 1 

Query: 161 LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDL 220
           LG TQ HHSLWFA PKKYSEGL+ED+KIRDCI+N+VQKN+   SG+EGIARIEIQKRIDL
Sbjct: 12  LGTTQSHHSLWFAQPKKYSEGLEEDKKIRDCIKNYVQKNIRISSGMEGIARIEIQKRIDL 71

Query: 221 IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI 280
           IQ+II+MGFPKLLIE   R++EELQMNVQKELN VNRKLNIAITRI+NPYG PNILAEFI
Sbjct: 72  IQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRISNPYGDPNILAEFI 131

Query: 281 AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQA 340
           AGQL+NRVSFRKAMKKAIELTEQA TKGIQVQIAGRIDGKEIARVEWIREGRVPLQTI+A
Sbjct: 132 AGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEA 191

Query: 341 KIDYCCYPVRTIYGVLGIKIWIFVDEQ 368
           KIDYC Y VRTIYGVLGIKIWIFVDE+
Sbjct: 192 KIDYCSYTVRTIYGVLGIKIWIFVDEE 218

[Close]
BLAST of CmoCh11G012240 vs. TrEMBL
Match: K4ASW1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 530.8 bits (1366), Expect = 1.3e-147
Identity = 274/361 (75.90%), Postives = 300/361 (83.10%), Query Frame = 1 

Query: 7   KNPSTEVYALGQHICMSPHKARRVIDQIRGRSYYETLVILKLMPYRACYPIFDLVYSAAA 66
           K   TEVYALG+HI MS  KARRVIDQIRGRSY ETL+IL+LMPYRACYPI  LVYSAAA
Sbjct: 3   KKKKTEVYALGEHISMSADKARRVIDQIRGRSYEETLMILELMPYRACYPILKLVYSAAA 62

Query: 67  NARCNMGFNEADLVISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKDTLLSEFS 126
           NA  NMG +E +LVISKAEVN+ TTVKKLKPRARGRS+PIKR TC ITIV+KD  L +  
Sbjct: 63  NASYNMGSSETNLVISKAEVNEGTTVKKLKPRARGRSFPIKRSTCHITIVMKDISLDD-- 122

Query: 127 SDKLKRYQYNILDLNKPDGWITKEKYPDMTSYDILGVTQGHHSLWFAHPKKYSEGLQEDQ 186
                  +Y  +   K   W  K+K   MT  DILG TQ HHSLWF+ PK YSEGLQED+
Sbjct: 123 -------EYGEMSSLKKTRW--KKKSTAMTYRDILGTTQSHHSLWFSQPKNYSEGLQEDK 182

Query: 187 KIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQM 246
           KIRDCI+N+VQKNM   SG+EGIARIEIQKRIDLIQVIIFMGFPKLLIE   R IEELQM
Sbjct: 183 KIRDCIKNYVQKNMRTSSGIEGIARIEIQKRIDLIQVIIFMGFPKLLIESRPRGIEELQM 242

Query: 247 NVQKELNSVNRKLNIAITRIANPYGHPNILAEFIAGQLQNRVSFRKAMKKAIELTEQAGT 306
            +QKE N VNRKLNIA+TRIA PYG+PNILAEFIAGQL+NRVSFRKAMKKAIELTEQA T
Sbjct: 243 TLQKEFNCVNRKLNIAVTRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADT 302

Query: 307 KGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQAKIDYCCYPVRTIYGVLGIKIWIFVDE 366
           KGIQ+QIAGRIDGKEIARVEWIREGRVPLQTI+AKIDYC Y VRTIYG+LGIKIWIF+DE
Sbjct: 303 KGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGILGIKIWIFLDE 352

Query: 367 Q 368
           +
Sbjct: 363 E 352

[Close]
BLAST of CmoCh11G012240 vs. TrEMBL
Match: S8EET6_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00220 PE=3 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 6.8e-128
Identity = 246/361 (68.14%), Postives = 283/361 (78.39%), Query Frame = 1 

Query: 7   KNPSTEVYALGQHICMSPHKARRVIDQIRGRSYYETLVILKLMPYRACYPIFDLVYSAAA 66
           K   TEVYA GQHI +S  KARR+IDQIRGRSY ETL+IL+LM YRACYPI  LVYSAA+
Sbjct: 3   KKKKTEVYASGQHISISDDKARRIIDQIRGRSYEETLIILELMSYRACYPILKLVYSAAS 62

Query: 67  NARCNMGFNEADLVISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKDTLLSEFS 126
           NARC +G ++A+LVISKAEVN+ TT KK + RARGRS  IK+ TC ITIV+KD  L E+ 
Sbjct: 63  NARCILGSDKANLVISKAEVNKGTTRKKFQTRARGRSSAIKKATCHITIVVKDISLDEYE 122

Query: 127 SDKLKRYQYNILDLNKPDGWITKEKYPDMTSYDILGVTQGHHSLWFAHPKKYSEGLQEDQ 186
                   Y       P G    +K   +     LG TQ H+S+WF+ PKKYS+ LQEDQ
Sbjct: 123 D------MY-------PWGGSMGQKINPLGFR--LGTTQSHYSIWFSQPKKYSKDLQEDQ 182

Query: 187 KIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQM 246
           KIRD ++N++QK +   SG EGIARIEIQKRIDLIQVIIFMGFPKLLIE   R IEELQM
Sbjct: 183 KIRDFLKNYIQKKIRITSGNEGIARIEIQKRIDLIQVIIFMGFPKLLIENRPRGIEELQM 242

Query: 247 NVQKELNSVNRKLNIAITRIANPYGHPNILAEFIAGQLQNRVSFRKAMKKAIELTEQAGT 306
           N+QKE   VNRKLNIAITRI  PYG+P ILAEF+AGQL+NRVSFRKA+KKAIELTEQA T
Sbjct: 243 NIQKEFPYVNRKLNIAITRIPKPYGNPTILAEFLAGQLKNRVSFRKAIKKAIELTEQADT 302

Query: 307 KGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQAKIDYCCYPVRTIYGVLGIKIWIFVDE 366
           KGIQVQI+GRIDGKEIARVEW+REGRVPLQTI+AKIDYC Y  RTIYGVLGIKIWI +++
Sbjct: 303 KGIQVQISGRIDGKEIARVEWMREGRVPLQTIRAKIDYCSYTARTIYGVLGIKIWICINK 348

Query: 367 Q 368
           +
Sbjct: 363 E 348

[Close]
BLAST of CmoCh11G012240 vs. TrEMBL
Match: A0A0S2IE86_9ROSI (Ribosomal protein S3 OS=Cucurbita argyrosperma var. palmeri GN=rps3 PE=3 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 6.2e-113
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1 

Query: 161 LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDL 220
           LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDL
Sbjct: 12  LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDL 71

Query: 221 IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI 280
           IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI
Sbjct: 72  IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI 131

Query: 281 AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQA 340
           AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQA
Sbjct: 132 AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQA 191

Query: 341 KIDYCCYPVRTIYGVLGIKIWIFVDEQ 368
           KIDYCCYPVRTIYGVLGIKIWIFVDEQ
Sbjct: 192 KIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]
BLAST of CmoCh11G012240 vs. TrEMBL
Match: A0A0S2IFI0_CUCMO (Ribosomal protein S3 OS=Cucurbita moschata GN=rps3 PE=3 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 6.2e-113
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1 

Query: 161 LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDL 220
           LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDL
Sbjct: 12  LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDL 71

Query: 221 IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI 280
           IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI
Sbjct: 72  IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI 131

Query: 281 AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQA 340
           AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQA
Sbjct: 132 AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQA 191

Query: 341 KIDYCCYPVRTIYGVLGIKIWIFVDEQ 368
           KIDYCCYPVRTIYGVLGIKIWIFVDEQ
Sbjct: 192 KIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]
BLAST of CmoCh11G012240 vs. TrEMBL
Match: A0A0S2IFZ0_9ROSI (Ribosomal protein S3 OS=Cucurbita okeechobeensis subsp. martinezii GN=rps3 PE=3 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 6.2e-113
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1 

Query: 161 LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDL 220
           LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDL
Sbjct: 12  LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDL 71

Query: 221 IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI 280
           IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI
Sbjct: 72  IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI 131

Query: 281 AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQA 340
           AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQA
Sbjct: 132 AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQA 191

Query: 341 KIDYCCYPVRTIYGVLGIKIWIFVDEQ 368
           KIDYCCYPVRTIYGVLGIKIWIFVDEQ
Sbjct: 192 KIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]
BLAST of CmoCh11G012240 vs. TAIR10
Match: ATCG00800.1 (ATCG00800.1 structural constituent of ribosome)

HSP 1 Score: 362.8 bits (930), Expect = 2.4e-100
Identity = 179/207 (86.47%), Postives = 193/207 (93.24%), Query Frame = 1 

Query: 161 LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDL 220
           LG TQ HHSLWFA PKKYSEGL+ED+KIRDCI+N+VQKN+   SG+EGIARIEIQKRIDL
Sbjct: 12  LGTTQSHHSLWFAQPKKYSEGLEEDKKIRDCIKNYVQKNIRISSGMEGIARIEIQKRIDL 71

Query: 221 IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI 280
           IQ+II+MGFPKLLIE   R++EELQMNVQKELN VNRKLNIAITRI+NPYG PNILAEFI
Sbjct: 72  IQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRISNPYGDPNILAEFI 131

Query: 281 AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQA 340
           AGQL+NRVSFRKAMKKAIELTEQA TKGIQVQIAGRIDGKEIARVEWIREGRVPLQTI+A
Sbjct: 132 AGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEA 191

Query: 341 KIDYCCYPVRTIYGVLGIKIWIFVDEQ 368
           KIDYC Y VRTIYGVLGIKIWIFVDE+
Sbjct: 192 KIDYCSYTVRTIYGVLGIKIWIFVDEE 218

[Close]
BLAST of CmoCh11G012240 vs. TAIR10
Match: ATCG00810.1 (ATCG00810.1 ribosomal protein L22)

HSP 1 Score: 186.0 bits (471), Expect = 4.1e-47
Identity = 105/171 (61.40%), Postives = 118/171 (69.01%), Query Frame = 1 

Query: 1   MIKKIKKNPSTEVYALGQHICMSPHKARRVIDQIRGRSYYETLVILKLMPYRACYPIFDL 60
           MIKK KK   TEVYALGQ+I MS HKARRVIDQIRGRSY E L+IL+LMPYR CYPIF L
Sbjct: 1   MIKKRKKKSYTEVYALGQYISMSAHKARRVIDQIRGRSYEEALMILELMPYRGCYPIFKL 60

Query: 61  VYSAAANARCNMGFNEADLVISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKDT 120
           VYSAAANA  N GF E +LVISKAEVNQ  TVKKLKPRARGRSYPIKR TC ITIVL+D 
Sbjct: 61  VYSAAANASHNKGFKETNLVISKAEVNQGNTVKKLKPRARGRSYPIKRSTCHITIVLEDI 120

Query: 121 LLSEFSSDKLKRYQYNILDLNKPDGWITKEKYPDMTSYDILGVTQGHHSLW 172
                     ++Y+  ++ L KP       +  ++T YD    T     LW
Sbjct: 121 SF-------YQQYEEYLMYLKKPG---CSNENRNLTCYD----TYSSGGLW 157

[Close]
BLAST of CmoCh11G012240 vs. TAIR10
Match: AT1G52370.1 (AT1G52370.1 Ribosomal protein L22p/L17e family protein)

HSP 1 Score: 62.0 bits (149), Expect = 8.8e-10
Identity = 42/157 (26.75%), Postives = 79/157 (50.32%), Query Frame = 1 

Query: 12  EVYALGQHICMSPHKARRVIDQIRGRSYYETLVILKLMPYRACYPIFDLVYSAAANARCN 71
           +V A+ + I  SP K   V   +RG    + L+ L++   RA   ++ ++++A ANA  N
Sbjct: 105 KVQAVLKSIKQSPKKVNLVAALVRGMRVEDALMQLQVTVKRASQTVYRVIHAARANATHN 164

Query: 72  MGFNEADLVISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKDTLLSEFSSDKLK 131
            G +   L++++A V +    KK+   A+GRS  I  P C +T+++++T   E  ++  +
Sbjct: 165 HGLDPDRLLVAEAFVGKGLFGKKVAYHAKGRSGIISIPRCRLTVIVRETTAEE-EAEIAR 224

Query: 132 RYQYNILDLNKPDGWITKEKYPDMTSYDILGVTQGHH 169
              +N   LNK    +   K  + +       T+G+H
Sbjct: 225 LKVHNFKKLNKRQRQLVPHKLIETSPIWNRRGTKGNH 260

[Close]
BLAST of CmoCh11G012240 vs. TAIR10
Match: AT4G28360.1 (AT4G28360.1 Ribosomal protein L22p/L17e family protein)

HSP 1 Score: 59.3 bits (142), Expect = 5.7e-09
Identity = 34/113 (30.09%), Postives = 62/113 (54.87%), Query Frame = 1 

Query: 12  EVYALGQHICMSPHKARRVIDQIRGRSYYETLVILKLMPYRACYPIFDLVYSAAANARCN 71
           +V A+ + I  SP K   V   +RG    + L+ L++   RA   ++ ++++A ANA  N
Sbjct: 106 KVQAVLKSIKQSPKKVNLVAALVRGMRVEDALIQLQVTVKRAAQTVYRVIHAARANATHN 165

Query: 72  MGFNEADLVISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKDTLLSE 125
            G +   L++++A V +    KK+   A+GRS  I  P C +T+++++T   E
Sbjct: 166 HGLDPDRLLVAEAFVGKGLFGKKVAYHAKGRSGIISIPRCRLTVIVRETTPEE 218

[Close]
BLAST of CmoCh11G012240 vs. NCBI nr
Match: gi|527209894|gb|EPS74503.1| (hypothetical protein M569_00220, partial [Genlisea aurea])

HSP 1 Score: 465.3 bits (1196), Expect = 9.8e-128
Identity = 246/361 (68.14%), Postives = 283/361 (78.39%), Query Frame = 1 

Query: 7   KNPSTEVYALGQHICMSPHKARRVIDQIRGRSYYETLVILKLMPYRACYPIFDLVYSAAA 66
           K   TEVYA GQHI +S  KARR+IDQIRGRSY ETL+IL+LM YRACYPI  LVYSAA+
Sbjct: 3   KKKKTEVYASGQHISISDDKARRIIDQIRGRSYEETLIILELMSYRACYPILKLVYSAAS 62

Query: 67  NARCNMGFNEADLVISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKDTLLSEFS 126
           NARC +G ++A+LVISKAEVN+ TT KK + RARGRS  IK+ TC ITIV+KD  L E+ 
Sbjct: 63  NARCILGSDKANLVISKAEVNKGTTRKKFQTRARGRSSAIKKATCHITIVVKDISLDEYE 122

Query: 127 SDKLKRYQYNILDLNKPDGWITKEKYPDMTSYDILGVTQGHHSLWFAHPKKYSEGLQEDQ 186
                   Y       P G    +K   +     LG TQ H+S+WF+ PKKYS+ LQEDQ
Sbjct: 123 D------MY-------PWGGSMGQKINPLGFR--LGTTQSHYSIWFSQPKKYSKDLQEDQ 182

Query: 187 KIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQM 246
           KIRD ++N++QK +   SG EGIARIEIQKRIDLIQVIIFMGFPKLLIE   R IEELQM
Sbjct: 183 KIRDFLKNYIQKKIRITSGNEGIARIEIQKRIDLIQVIIFMGFPKLLIENRPRGIEELQM 242

Query: 247 NVQKELNSVNRKLNIAITRIANPYGHPNILAEFIAGQLQNRVSFRKAMKKAIELTEQAGT 306
           N+QKE   VNRKLNIAITRI  PYG+P ILAEF+AGQL+NRVSFRKA+KKAIELTEQA T
Sbjct: 243 NIQKEFPYVNRKLNIAITRIPKPYGNPTILAEFLAGQLKNRVSFRKAIKKAIELTEQADT 302

Query: 307 KGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQAKIDYCCYPVRTIYGVLGIKIWIFVDE 366
           KGIQVQI+GRIDGKEIARVEW+REGRVPLQTI+AKIDYC Y  RTIYGVLGIKIWI +++
Sbjct: 303 KGIQVQISGRIDGKEIARVEWMREGRVPLQTIRAKIDYCSYTARTIYGVLGIKIWICINK 348

Query: 367 Q 368
           +
Sbjct: 363 E 348

[Close]
BLAST of CmoCh11G012240 vs. NCBI nr
Match: gi|952954350|gb|ALO21714.1| (ribosomal protein S3 (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 415.6 bits (1067), Expect = 8.9e-113
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1 

Query: 161 LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDL 220
           LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDL
Sbjct: 12  LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDL 71

Query: 221 IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI 280
           IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI
Sbjct: 72  IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI 131

Query: 281 AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQA 340
           AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQA
Sbjct: 132 AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQA 191

Query: 341 KIDYCCYPVRTIYGVLGIKIWIFVDEQ 368
           KIDYCCYPVRTIYGVLGIKIWIFVDEQ
Sbjct: 192 KIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]
BLAST of CmoCh11G012240 vs. NCBI nr
Match: gi|952955292|gb|ALO22642.1| (ribosomal protein S3 (plastid) [Cucurbita pepo subsp. ovifera])

HSP 1 Score: 414.5 bits (1064), Expect = 2.0e-112
Identity = 206/207 (99.52%), Postives = 207/207 (100.00%), Query Frame = 1 

Query: 161 LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDL 220
           LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMT+VSGVEGIARIEIQKRIDL
Sbjct: 12  LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTKVSGVEGIARIEIQKRIDL 71

Query: 221 IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI 280
           IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI
Sbjct: 72  IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI 131

Query: 281 AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQA 340
           AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQA
Sbjct: 132 AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQA 191

Query: 341 KIDYCCYPVRTIYGVLGIKIWIFVDEQ 368
           KIDYCCYPVRTIYGVLGIKIWIFVDEQ
Sbjct: 192 KIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]
BLAST of CmoCh11G012240 vs. NCBI nr
Match: gi|952954725|gb|ALO22084.1| (ribosomal protein S3 (plastid) [Cucurbita ecuadorensis])

HSP 1 Score: 414.1 bits (1063), Expect = 2.6e-112
Identity = 206/207 (99.52%), Postives = 207/207 (100.00%), Query Frame = 1 

Query: 161 LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDL 220
           LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDL
Sbjct: 12  LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDL 71

Query: 221 IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI 280
           IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI
Sbjct: 72  IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI 131

Query: 281 AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQA 340
           AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTI+A
Sbjct: 132 AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRA 191

Query: 341 KIDYCCYPVRTIYGVLGIKIWIFVDEQ 368
           KIDYCCYPVRTIYGVLGIKIWIFVDEQ
Sbjct: 192 KIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]
BLAST of CmoCh11G012240 vs. NCBI nr
Match: gi|952954577|gb|ALO21938.1| (ribosomal protein S3 (plastid) [Cucurbita cordata])

HSP 1 Score: 408.3 bits (1048), Expect = 1.4e-110
Identity = 204/207 (98.55%), Postives = 205/207 (99.03%), Query Frame = 1 

Query: 161 LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTRVSGVEGIARIEIQKRIDL 220
           LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMT VSGVEGIARIEIQKRIDL
Sbjct: 12  LGVTQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNFVQKNMTIVSGVEGIARIEIQKRIDL 71

Query: 221 IQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI 280
           IQVIIFMGFPKLLIEGGSRKIE+LQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI
Sbjct: 72  IQVIIFMGFPKLLIEGGSRKIEKLQMNVQKELNSVNRKLNIAITRIANPYGHPNILAEFI 131

Query: 281 AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIQA 340
           AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTI A
Sbjct: 132 AGQLQNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIGA 191

Query: 341 KIDYCCYPVRTIYGVLGIKIWIFVDEQ 368
           KIDYCCYPVRTIYGVLGIKIWIFVDEQ
Sbjct: 192 KIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

The following BLAST results are available for this feature:
BLAST of CmoCh11G012240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR3_CUCSA9.5e-10792.2730S ribosomal protein S3, chloroplastic OS=Cucumis sativus GN=rps3 PE=3 SV=1[more]
RR3_VITVI3.9e-10087.9230S ribosomal protein S3, chloroplastic OS=Vitis vinifera GN=rps3 PE=3 SV=1[more]
RR3_ATRBE4.3e-9986.9630S ribosomal protein S3, chloroplastic OS=Atropa belladonna GN=rps3 PE=3 SV=1[more]
RR3_CAPBU4.3e-9986.4730S ribosomal protein S3, chloroplastic OS=Capsella bursa-pastoris GN=rps3 PE=3 ... [more]
RR3_OLIPU4.3e-9986.4730S ribosomal protein S3, chloroplastic OS=Olimarabidopsis pumila GN=rps3 PE=3 S... [more]
BLAST of CmoCh11G012240 vs. TrEMBL
Match NameE-valueIdentityDescription
K4ASW1_SOLLC1.3e-14775.90Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1[more]
S8EET6_9LAMI6.8e-12868.14Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00220 PE=3 SV=1[more]
A0A0S2IE86_9ROSI6.2e-113100.00Ribosomal protein S3 OS=Cucurbita argyrosperma var. palmeri GN=rps3 PE=3 SV=1[more]
A0A0S2IFI0_CUCMO6.2e-113100.00Ribosomal protein S3 OS=Cucurbita moschata GN=rps3 PE=3 SV=1[more]
A0A0S2IFZ0_9ROSI6.2e-113100.00Ribosomal protein S3 OS=Cucurbita okeechobeensis subsp. martinezii GN=rps3 PE=3 ... [more]
BLAST of CmoCh11G012240 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00800.12.4e-10086.47ATCG00800.1 structural constituent of ribosome[more]
ATCG00810.14.1e-4761.40ATCG00810.1 ribosomal protein L22[more]
AT1G52370.18.8e-1026.75 Ribosomal protein L22p/L17e family protein[more]
AT4G28360.15.7e-0930.09 Ribosomal protein L22p/L17e family protein[more]
BLAST of CmoCh11G012240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|527209894|gb|EPS74503.1|9.8e-12868.14hypothetical protein M569_00220, partial [Genlisea aurea][more]
gi|952954350|gb|ALO21714.1|8.9e-113100.00ribosomal protein S3 (plastid) [Cucurbita argyrosperma][more]
gi|952955292|gb|ALO22642.1|2.0e-11299.52ribosomal protein S3 (plastid) [Cucurbita pepo subsp. ovifera][more]
gi|952954725|gb|ALO22084.1|2.6e-11299.52ribosomal protein S3 (plastid) [Cucurbita ecuadorensis][more]
gi|952954577|gb|ALO21938.1|1.4e-11098.55ribosomal protein S3 (plastid) [Cucurbita cordata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001063Ribosomal_L22
IPR001351Ribosomal_S3_C
IPR004044KH_dom_type_2
IPR005704Ribosomal_S3_bac
IPR005727Ribosomal_L22_bac/chlpt-type
IPR009019KH_sf_prok-type
IPR015946KH_dom-like_a/b
IPR018280Ribosomal_S3_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015935small ribosomal subunit
GO:0015934large ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G012240.1CmoCh11G012240.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001063Ribosomal protein L22/L17GENE3DG3DSA:3.90.470.10coord: 12..119
score: 1.3
IPR001063Ribosomal protein L22/L17PFAMPF00237Ribosomal_L22coord: 18..118
score: 3.3
IPR001063Ribosomal protein L22/L17unknownSSF54843Ribosomal protein L22coord: 6..119
score: 1.02
IPR001351Ribosomal protein S3, C-terminalGENE3DG3DSA:3.30.1140.32coord: 268..366
score: 1.5
IPR001351Ribosomal protein S3, C-terminalunknownSSF54821Ribosomal protein S3 C-terminal domaincoord: 268..366
score: 3.66
IPR004044K Homology domain, type 2PROFILEPS50823KH_TYPE_2coord: 196..267
score: 10
IPR005704Ribosomal protein S3, bacterialHAMAPMF_01309_BRibosomal_S3_Bcoord: 147..366
score: 2
IPR005704Ribosomal protein S3, bacterialTIGRFAMsTIGR01009TIGR01009coord: 161..366
score: 4.2
IPR005727Ribosomal protein L22, bacterial/chloroplast-typeHAMAPMF_01331_BRibosomal_L22_Bcoord: 11..120
score: 24
IPR005727Ribosomal protein L22, bacterial/chloroplast-typeTIGRFAMsTIGR01044TIGR01044coord: 18..116
score: 2.7
IPR009019K homology domain, prokaryotic typeunknownSSF54814Prokaryotic type KH domain (KH-domain type II)coord: 161..261
score: 2.01
IPR015946K homology domain-like, alpha/betaGENE3DG3DSA:3.30.300.20coord: 167..266
score: 4.3
IPR018280Ribosomal protein S3, conserved sitePROSITEPS00548RIBOSOMAL_S3coord: 323..357
scor
NoneNo IPR availablePANTHERPTHR1176030S/40S RIBOSOMAL PROTEIN S3coord: 161..366
score: 1.6
NoneNo IPR availablePANTHERPTHR11760:SF1930S RIBOSOMAL PROTEIN S3, CHLOROPLASTICcoord: 161..366
score: 1.6
NoneNo IPR availablePFAMPF00189Ribosomal_S3_Ccoord: 280..362
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh11G012240Cucurbita maxima (Rimu)cmacmoB679
CmoCh11G012240Cucurbita pepo (Zucchini)cmocpeB127
CmoCh11G012240Wax gourdcmowgoB0164