CmoCh11G012170 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G012170
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr11 : 7377901 .. 7378359 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTATGGTTAGTTCACCGGAAGGATCGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCCACCTTGTTAACTATGACAAGAGTCGCTACTATAAACAGACTCGCGACTATGGCATGGCGGCTCTCTCGGGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTAAAGACCACTGGAATGAGAAAGGCTTTGATGACTCAAGGTTAATATTGAATTAATATTAGATTCTTAGGGAAAGGAGAGTGAGGGGAAGAGGGGGATGCCCTCGGCCCGATCATCCTATTCTCCCCAAGAGACAAGCATGGTTTCGTAGTCAAAGCAACTTCGTCACTTTCGTGTACCCATCGGATGGCAGCCCTTTTGGGGGTTCCTTAGGGACCGATTCACTTTGCGTAGATTGA

mRNA sequence

ATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTATGATTCTTAGGGAAAGGAGAGTGAGGGGAAGAGGGGGATGCCCTCGGCCCGATCATCCTATTCTCCCCAAGAGACAAGCATGGTTTCGTAGTCAAAGCAACTTCGTCACTTTCGTGTACCCATCGGATGGCAGCCCTTTTGGGGGTTCCTTAGGGACCGATTCACTTTGCGTAGATTGA

Coding sequence (CDS)

ATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTATGATTCTTAGGGAAAGGAGAGTGAGGGGAAGAGGGGGATGCCCTCGGCCCGATCATCCTATTCTCCCCAAGAGACAAGCATGGTTTCGTAGTCAAAGCAACTTCGTCACTTTCGTGTACCCATCGGATGGCAGCCCTTTTGGGGGTTCCTTAGGGACCGATTCACTTTGCGTAGATTGA

Homology

[Close]

BLAST of CmoCh11G012170 vs. TrEMBL
Match: A0A103TPE1_CYNCS (Copper centre Cu(A) (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_025893 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 7.7e-21
Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = 1


Query: 22  LRERRVRGRGGCPRPDHPILPKRQAWFRSQSNFVTFVYPSDGSPFGGSLGTDSLCV 78
           +RERR RGRGG PRPDHPI   RQAWF SQSNFVTFVYPSDGSPFGGSLGTDSLC+
Sbjct: 337 IRERRXRGRGGSPRPDHPIRSNRQAWFCSQSNFVTFVYPSDGSPFGGSLGTDSLCL 392

[Close]

BLAST of CmoCh11G012170 vs. TrEMBL
Match: A0A0J8B9Z5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g200780 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.3e-17
Identity = 45/57 (78.95%), Postives = 46/57 (80.70%), Query Frame = 1


Query: 22 LRERRVRGRGGCPRPDHPILPKRQAWFRSQSNFVTFVYPSDGSPFGGSLGTDSLCVD 79
          +R RRVRGRG   RPDHPI   R AW  SQSNFVTFVYPSD SPFGGSLGTDSLCVD
Sbjct: 4  IRGRRVRGRGDESRPDHPIRSNRPAWLCSQSNFVTFVYPSDDSPFGGSLGTDSLCVD 60

[Close]

BLAST of CmoCh11G012170 vs. NCBI nr
Match: gi|976830205|gb|KVH20946.1| (Copper centre Cu(A), partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-20
Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = 1


Query: 22  LRERRVRGRGGCPRPDHPILPKRQAWFRSQSNFVTFVYPSDGSPFGGSLGTDSLCV 78
           +RERR RGRGG PRPDHPI   RQAWF SQSNFVTFVYPSDGSPFGGSLGTDSLC+
Sbjct: 337 IRERRXRGRGGSPRPDHPIRSNRQAWFCSQSNFVTFVYPSDGSPFGGSLGTDSLCL 392

[Close]

BLAST of CmoCh11G012170 vs. NCBI nr
Match: gi|870843541|gb|KMS96692.1| (hypothetical protein BVRB_8g200780 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 95.9 bits (237), Expect = 3.3e-17
Identity = 45/57 (78.95%), Postives = 46/57 (80.70%), Query Frame = 1


Query: 22 LRERRVRGRGGCPRPDHPILPKRQAWFRSQSNFVTFVYPSDGSPFGGSLGTDSLCVD 79
          +R RRVRGRG   RPDHPI   R AW  SQSNFVTFVYPSD SPFGGSLGTDSLCVD
Sbjct: 4  IRGRRVRGRGDESRPDHPIRSNRPAWLCSQSNFVTFVYPSDDSPFGGSLGTDSLCVD 60

The following BLAST results are available for this feature:

BLAST of CmoCh11G012170 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh11G012170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A103TPE1_CYNCS	7.7e-21	85.71	Copper centre Cu(A) (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_02589...	[more]
A0A0J8B9Z5_BETVU	2.3e-17	78.95	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g200780 PE=4 S...	[more]

BLAST of CmoCh11G012170 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh11G012170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|976830205\|gb\|KVH20946.1\|	1.1e-20	85.71	Copper centre Cu(A), partial [Cynara cardunculus var. scolymus]	[more]
gi\|870843541\|gb\|KMS96692.1\|	3.3e-17	78.95	hypothetical protein BVRB_8g200780 [Beta vulgaris subsp. vulgaris]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G012170.1	CmoCh11G012170.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G012170	Cucurbita maxima (Rimu)	cmacmoB679
CmoCh11G012170	Cucurbita pepo (Zucchini)	cmocpeB127