CmoCh11G012150 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh11G012150
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPhotosystem II CP43 reaction center protein
LocationCmo_Chr11 : 7313112 .. 7313574 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATGGATGGTGCAAATAGATTCCTTCCGGGTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCACTTTTGGTACCAAATCTGTGAGGTTTTCCAATAAAAAAGGGGTTATTACATTTCTTTCTTTTATTTGTAACAGTAACTACTTTATGGATGAGTGCTTGCTCTTGGAGTAGTAGTTAGTTGGTCTGGCCATGAACCTACGTGCCTATGACTTTGTTTCTTAGGAAATCCGTGGGAAGATCCTGAATTTGAGACTTTCTATCTATATACACCAAAAATCTTCTCTTAACCGAAGGGATTCGTACTTGGATGGCGGCTCAAGCAAGATCAGCCTCATGAAAATACACCTTACCTTATATTACCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAATGGAACTTTATCTTTAGTTGGTCGTAACCAAGAAAGAACCCCCTGA

mRNA sequence

ATGGTGATGGATGGTGCAAATAGATTCCTTCCGGGTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCACTTTTGGTACCAAATCTGTGAGGAAATCCGTGGGAAGATCCTGAATTTGAGACTTTCTATCTATATACACCAAAAATCTTCTCTTAACCGAAGGGATTCGTACTTGGATGGCGGCTCAAGCAAGATCAGCCTCATGAAAATACACCTTACCTTATATTACCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAATGGAACTTTATCTTTAGTTGGTCGTAACCAAGAAAGAACCCCCTGA

Coding sequence (CDS)

ATGGTGATGGATGGTGCAAATAGATTCCTTCCGGGTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCACTTTTGGTACCAAATCTGTGAGGAAATCCGTGGGAAGATCCTGAATTTGAGACTTTCTATCTATATACACCAAAAATCTTCTCTTAACCGAAGGGATTCGTACTTGGATGGCGGCTCAAGCAAGATCAGCCTCATGAAAATACACCTTACCTTATATTACCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAATGGAACTTTATCTTTAGTTGGTCGTAACCAAGAAAGAACCCCCTGA
Homology
[Close]
BLAST of CmoCh11G012150 vs. Swiss-Prot
Match: PSBC_PHAAO (Photosystem II CP43 reaction center protein OS=Phalaenopsis aphrodite subsp. formosana GN=psbC PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-06
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 1 

Query: 78  TLYYLRRFYPVETLFNGTLSLVGRNQERT 107
           TLY LRRFYPVETLFNGTL+LVGR+QE T
Sbjct: 3   TLYSLRRFYPVETLFNGTLALVGRDQETT 31

[Close]
BLAST of CmoCh11G012150 vs. Swiss-Prot
Match: PSBC_LIRTU (Photosystem II CP43 reaction center protein OS=Liriodendron tulipifera GN=psbC PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-06
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 1 

Query: 78  TLYYLRRFYPVETLFNGTLSLVGRNQERT 107
           TLY LRRFYPVETLFNGTLSL GR+QE T
Sbjct: 3   TLYSLRRFYPVETLFNGTLSLAGRDQETT 31

[Close]
BLAST of CmoCh11G012150 vs. Swiss-Prot
Match: PSBD_POPDE (Photosystem II D2 protein OS=Populus deltoides GN=psbD PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.6e-06
Identity = 24/30 (80.00%), Postives = 24/30 (80.00%), Query Frame = 1 

Query: 4   DGANRFLPGNPTQAEETYSMVTANHFWYQI 34
           DGAN F   NPTQAEETYSMVTAN FW QI
Sbjct: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQI 257

[Close]
BLAST of CmoCh11G012150 vs. Swiss-Prot
Match: PSBD_VITVI (Photosystem II D2 protein OS=Vitis vinifera GN=psbD PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.6e-06
Identity = 24/30 (80.00%), Postives = 24/30 (80.00%), Query Frame = 1 

Query: 4   DGANRFLPGNPTQAEETYSMVTANHFWYQI 34
           DGAN F   NPTQAEETYSMVTAN FW QI
Sbjct: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQI 257

[Close]
BLAST of CmoCh11G012150 vs. Swiss-Prot
Match: PSBD_POPTR (Photosystem II D2 protein OS=Populus trichocarpa GN=psbD PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.6e-06
Identity = 24/30 (80.00%), Postives = 24/30 (80.00%), Query Frame = 1 

Query: 4   DGANRFLPGNPTQAEETYSMVTANHFWYQI 34
           DGAN F   NPTQAEETYSMVTAN FW QI
Sbjct: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQI 257

[Close]
BLAST of CmoCh11G012150 vs. TrEMBL
Match: A0A0E0JUB3_ORYPU (Uncharacterized protein OS=Oryza punctata PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.3e-14
Identity = 57/132 (43.18%), Postives = 67/132 (50.76%), Query Frame = 1 

Query: 4   DGANRFLPGNPTQAEETYSMVTANHFWYQI--------------------------CEEI 63
           DGAN F   NPTQAEETYSMVT N FW QI                             +
Sbjct: 102 DGANTFRAFNPTQAEETYSMVTVNRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAIGV 161

Query: 64  RGKILNLRLSIYIHQKSSLNRR---DSYLDGGSSKISLMKIHLTLYYLRRFYPVETLFNG 107
            G  LNLR   ++ Q+    +    + ++ G   +ISLMKI   LY LRRFY VETLFNG
Sbjct: 162 VGLALNLRAYDFVSQEIRAAKDPEFEVFVRGWQLRISLMKI---LYSLRRFYHVETLFNG 221

[Close]
BLAST of CmoCh11G012150 vs. TrEMBL
Match: K3Z2T5_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_020853mg PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.2e-13
Identity = 59/143 (41.26%), Postives = 71/143 (49.65%), Query Frame = 1 

Query: 4   DGANRFLPGNPTQAEETYSMVTANHFWYQI--------------------------CEEI 63
           DGAN F   NPTQAEETYSMVTAN FW QI                             +
Sbjct: 195 DGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAIGV 254

Query: 64  RGKILNLRLSIYIHQK---------SSLNRRDSYLDGG-----SSKISLMKIHLTLYYLR 107
            G  LNLR   ++ Q+          +   ++  L+ G     +++ISLMKI   LY LR
Sbjct: 255 VGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQISLMKI---LYSLR 314

[Close]
BLAST of CmoCh11G012150 vs. TrEMBL
Match: I1H3A2_BRADI (Photosystem II D2 protein OS=Brachypodium distachyon PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.2e-13
Identity = 59/143 (41.26%), Postives = 71/143 (49.65%), Query Frame = 1 

Query: 4   DGANRFLPGNPTQAEETYSMVTANHFWYQI--------------------------CEEI 63
           DGAN F   NPTQAEETYSMVTAN FW QI                             +
Sbjct: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAIGV 287

Query: 64  RGKILNLRLSIYIHQK---------SSLNRRDSYLDGG-----SSKISLMKIHLTLYYLR 107
            G  LNLR   ++ Q+          +   ++  L+ G     +++ISLMKI   LY LR
Sbjct: 288 VGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQISLMKI---LYSLR 347

[Close]
BLAST of CmoCh11G012150 vs. TrEMBL
Match: B9RU80_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1634220 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.3e-09
Identity = 50/140 (35.71%), Postives = 61/140 (43.57%), Query Frame = 1 

Query: 4   DGANRFLPGNPTQAEETYSMVTANHFWYQI--------------------------CEEI 63
           DGAN F   NPTQA+ETYSMVTAN FW QI                             +
Sbjct: 29  DGANTFRAFNPTQAKETYSMVTANRFWSQIHGVAFSNKCWLHFFMLFVPVTGLSMSALRV 88

Query: 64  RGKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLM-----------KIHLTLYYLRRFY 107
            G   NLR   ++ Q+  +     +    +  I L            + H  L +LRRFY
Sbjct: 89  VGLAPNLRAYDFVSQEIRIAEDLEFETFYTKNILLNEGIRAWMGTQDQPHENLVFLRRFY 148

[Close]
BLAST of CmoCh11G012150 vs. TrEMBL
Match: G7IVM9_MEDTR (Photosystem II protein OS=Medicago truncatula GN=MTR_3g008370 PE=4 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-06
Identity = 38/68 (55.88%), Postives = 43/68 (63.24%), Query Frame = 1 

Query: 39  GKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLMKIHLTLYYLRRFYPVETLFNGTLSL 98
           G  LNLR   ++ +KS   R      G   KISLMK   TLY LRRFY VETLFNGTL+L
Sbjct: 139 GMALNLRAYDFVLKKSVFVR------GWRLKISLMK---TLYSLRRFYHVETLFNGTLAL 197

Query: 99  VGRNQERT 107
            GR+QE T
Sbjct: 199 TGRDQETT 197

[Close]
BLAST of CmoCh11G012150 vs. TAIR10
Match: ATCG00270.1 (ATCG00270.1 photosystem II reaction center protein D)

HSP 1 Score: 52.4 bits (124), Expect = 2.0e-07
Identity = 24/30 (80.00%), Postives = 24/30 (80.00%), Query Frame = 1 

Query: 4   DGANRFLPGNPTQAEETYSMVTANHFWYQI 34
           DGAN F   NPTQAEETYSMVTAN FW QI
Sbjct: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQI 257

[Close]
BLAST of CmoCh11G012150 vs. TAIR10
Match: ATCG00280.1 (ATCG00280.1 photosystem II reaction center protein C)

HSP 1 Score: 48.9 bits (115), Expect = 2.3e-06
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 1 

Query: 78  TLYYLRRFYPVETLFNGTLSLVGRNQERT 107
           TLY LRRFY VETLFNGTL+L GR+QE T
Sbjct: 3   TLYSLRRFYHVETLFNGTLALAGRDQETT 31

[Close]
BLAST of CmoCh11G012150 vs. NCBI nr
Match: gi|944221278|gb|KQK85731.1| (hypothetical protein SETIT_020853mg [Setaria italica])

HSP 1 Score: 81.6 bits (200), Expect = 8.9e-13
Identity = 59/143 (41.26%), Postives = 71/143 (49.65%), Query Frame = 1 

Query: 4   DGANRFLPGNPTQAEETYSMVTANHFWYQI--------------------------CEEI 63
           DGAN F   NPTQAEETYSMVTAN FW QI                             +
Sbjct: 195 DGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAIGV 254

Query: 64  RGKILNLRLSIYIHQK---------SSLNRRDSYLDGG-----SSKISLMKIHLTLYYLR 107
            G  LNLR   ++ Q+          +   ++  L+ G     +++ISLMKI   LY LR
Sbjct: 255 VGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQISLMKI---LYSLR 314

[Close]
BLAST of CmoCh11G012150 vs. NCBI nr
Match: gi|223543562|gb|EEF45092.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-08
Identity = 50/140 (35.71%), Postives = 61/140 (43.57%), Query Frame = 1 

Query: 4   DGANRFLPGNPTQAEETYSMVTANHFWYQI--------------------------CEEI 63
           DGAN F   NPTQA+ETYSMVTAN FW QI                             +
Sbjct: 29  DGANTFRAFNPTQAKETYSMVTANRFWSQIHGVAFSNKCWLHFFMLFVPVTGLSMSALRV 88

Query: 64  RGKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLM-----------KIHLTLYYLRRFY 107
            G   NLR   ++ Q+  +     +    +  I L            + H  L +LRRFY
Sbjct: 89  VGLAPNLRAYDFVSQEIRIAEDLEFETFYTKNILLNEGIRAWMGTQDQPHENLVFLRRFY 148

[Close]
BLAST of CmoCh11G012150 vs. NCBI nr
Match: gi|1012112032|ref|XP_015960230.1| (PREDICTED: LOW QUALITY PROTEIN: photosystem II CP43 reaction center protein-like [Arachis duranensis])

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-06
Identity = 47/140 (33.57%), Postives = 57/140 (40.71%), Query Frame = 1 

Query: 4   DGANRFLPGNPTQAEETYSMVTANHFWYQI--------------------------CEEI 63
           DGAN F   NPTQAEETYSMVTAN FW QI                             +
Sbjct: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGV 287

Query: 64  RGKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLMK-----------IHLTLYYLRRFY 107
            G  LNLR   ++ Q+        +    +  I L +            H  L +     
Sbjct: 288 VGLALNLRAFDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVL 347

[Close]
BLAST of CmoCh11G012150 vs. NCBI nr
Match: gi|922374540|ref|XP_003598197.2| (photosystem II protein [Medicago truncatula])

HSP 1 Score: 59.7 bits (143), Expect = 3.6e-06
Identity = 38/68 (55.88%), Postives = 43/68 (63.24%), Query Frame = 1 

Query: 39  GKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLMKIHLTLYYLRRFYPVETLFNGTLSL 98
           G  LNLR   ++ +KS   R      G   KISLMK   TLY LRRFY VETLFNGTL+L
Sbjct: 139 GMALNLRAYDFVLKKSVFVR------GWRLKISLMK---TLYSLRRFYHVETLFNGTLAL 197

Query: 99  VGRNQERT 107
            GR+QE T
Sbjct: 199 TGRDQETT 197

[Close]
BLAST of CmoCh11G012150 vs. NCBI nr
Match: gi|806636800|ref|YP_009129688.1| (photosystem II 44 kDa protein (chloroplast) [Masdevallia picturata])

HSP 1 Score: 58.5 bits (140), Expect = 8.1e-06
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 1 

Query: 65  GGSSKISLMKIHLTLYYLRRFYPVETLFNGTLSLVGRNQERT 107
           G   +ISLMK   TLY LRRFYPVETLFNGTL+LVGR+QE T
Sbjct: 7   GWRLRISLMK---TLYSLRRFYPVETLFNGTLALVGRDQETT 45

The following BLAST results are available for this feature:
BLAST of CmoCh11G012150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSBC_PHAAO1.2e-0686.21Photosystem II CP43 reaction center protein OS=Phalaenopsis aphrodite subsp. for... [more]
PSBC_LIRTU1.6e-0686.21Photosystem II CP43 reaction center protein OS=Liriodendron tulipifera GN=psbC P... [more]
PSBD_POPDE3.6e-0680.00Photosystem II D2 protein OS=Populus deltoides GN=psbD PE=3 SV=1[more]
PSBD_VITVI3.6e-0680.00Photosystem II D2 protein OS=Vitis vinifera GN=psbD PE=3 SV=1[more]
PSBD_POPTR3.6e-0680.00Photosystem II D2 protein OS=Populus trichocarpa GN=psbD PE=3 SV=1[more]
BLAST of CmoCh11G012150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0E0JUB3_ORYPU7.3e-1443.18Uncharacterized protein OS=Oryza punctata PE=3 SV=1[more]
K3Z2T5_SETIT6.2e-1341.26Uncharacterized protein OS=Setaria italica GN=SETIT_020853mg PE=3 SV=1[more]
I1H3A2_BRADI6.2e-1341.26Photosystem II D2 protein OS=Brachypodium distachyon PE=3 SV=1[more]
B9RU80_RICCO9.3e-0935.71Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1634220 PE=4 SV=1[more]
G7IVM9_MEDTR2.5e-0655.88Photosystem II protein OS=Medicago truncatula GN=MTR_3g008370 PE=4 SV=2[more]
BLAST of CmoCh11G012150 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00270.12.0e-0780.00ATCG00270.1 photosystem II reaction center protein D[more]
ATCG00280.12.3e-0679.31ATCG00280.1 photosystem II reaction center protein C[more]
BLAST of CmoCh11G012150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|944221278|gb|KQK85731.1|8.9e-1341.26hypothetical protein SETIT_020853mg [Setaria italica][more]
gi|223543562|gb|EEF45092.1|1.3e-0835.71conserved hypothetical protein [Ricinus communis][more]
gi|1012112032|ref|XP_015960230.1|1.6e-0633.57PREDICTED: LOW QUALITY PROTEIN: photosystem II CP43 reaction center protein-like... [more]
gi|922374540|ref|XP_003598197.2|3.6e-0655.88photosystem II protein [Medicago truncatula][more]
gi|806636800|ref|YP_009129688.1|8.1e-0673.81photosystem II 44 kDa protein (chloroplast) [Masdevallia picturata][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G012150.1CmoCh11G012150.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh11G012150Cucurbita maxima (Rimu)cmacmoB679
CmoCh11G012150Cucurbita pepo (Zucchini)cmocpeB127