CmoCh11G012060 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G012060
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	Cmo_Chr11 : 7124761 .. 7125405 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTAGTCATTGATGATTTAAAGTTTGTTTTAACTGAGGAGTGTCCTCCAAACCCAAACTCAAATGCAAACCGAATAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTATACATTCTAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATGTGGTTATGAACAAAATAGAATATAACTTGACTGCTCTTCTTAATGAGCTACAGACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTATGA

mRNA sequence

ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTAGTCATTGATGATTTAAAGTTTGTTTTAACTGAGGAGTGTCCTCCAAACCCAAACTCAAATGCAAACCGAATAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTATACATTCTAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATGTGGTTATGAACAAAATAGAATATAACTTGACTGCTCTTCTTAATGAGCTACAGACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTATGA

Coding sequence (CDS)

ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTAGTCATTGATGATTTAAAGTTTGTTTTAACTGAGGAGTGTCCTCCAAACCCAAACTCAAATGCAAACCGAATAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTATACATTCTAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATGTGGTTATGAACAAAATAGAATATAACTTGACTGCTCTTCTTAATGAGCTACAGACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTATGA

Homology

[Close]

BLAST of CmoCh11G012060 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 5.6e-82
Identity = 155/212 (73.11%), Postives = 181/212 (85.38%), Query Frame = 1


Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYD 60
           M  SIVQLLASEKLNGDNY+ WKSNLNTILV+DDL+FVLTEECP  P  NANR  R+AYD
Sbjct: 1   MNTSIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RW+KANDKARVYILAS++DVLAKKHD + TAK IM+SL+ MFGQPS+SLRHEAIK+IY  
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           RMKEGTSVREHVLDMM+HFN+AE N   IDE +QVSFI+ SLPKSF  F+TN  +NKIE+
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEF 180

Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISKK 213
           NLT LLNELQ +Q+L  +KG+  EANVA++K+
Sbjct: 181 NLTTLLNELQRFQNLTLSKGKEVEANVAVTKR 212

[Close]

BLAST of CmoCh11G012060 vs. TrEMBL
Match: E2GK52_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.7e-57
Identity = 115/162 (70.99%), Postives = 134/162 (82.72%), Query Frame = 1


Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYD 60
           M  SIVQLLASEKLN DNY+ WKSNLNTILV++DL+F+LTEEC   P  NANR  R+AYD
Sbjct: 1   MNTSIVQLLASEKLNSDNYSAWKSNLNTILVVEDLRFILTEECHQAPALNANRTVREAYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RW KANDKA VYILAS++DVLAKK+D + T K IM+S + MFGQPS+SLRHEAIK IY  
Sbjct: 61  RWGKANDKACVYILASMTDVLAKKYDSIATTKGIMDSFREMFGQPSWSLRHEAIKRIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSL 163
           RMKEGTSVREHVLDMM+HFN+A+ +   IDE +QVSFI+ SL
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAKVHGGPIDEANQVSFILQSL 162

[Close]

BLAST of CmoCh11G012060 vs. TrEMBL
Match: W9SH28_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.2e-52
Identity = 107/201 (53.23%), Postives = 146/201 (72.64%), Query Frame = 1


Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYD 60
           M+N I+ LL +EKL+GDNY  WKSN+N +L+ +D KFVL +ECPP P +NA + AR+ YD
Sbjct: 1   MSNLIIILLVTEKLDGDNYAKWKSNMNILLICEDYKFVLVDECPPEPAANATKTAREPYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RWIKAN+KA+ ++LAS+SDVL KKH+ M TA EIMESL+ MFG PS   R +A++   N 
Sbjct: 61  RWIKANNKAKCFMLASMSDVLCKKHEEMETAYEIMESLEAMFGAPSEKARLDAVRAFMND 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           +MK+G+SV+ HVL+M+ H + AE N A IDE +Q+  I+ SL   F +F  N VMNK + 
Sbjct: 121 KMKKGSSVKAHVLNMIDHLHDAELNGARIDEATQLGIILESLSPDFHEFVNNFVMNKKKS 180

Query: 181 NLTALLNELQTYQSLLTNKGQ 202
           NLT L+N+LQ ++S    KG+
Sbjct: 181 NLTELMNDLQNFESTNQAKGR 201

[Close]

BLAST of CmoCh11G012060 vs. TrEMBL
Match: W9RXH5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001554 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 8.8e-51
Identity = 108/199 (54.27%), Postives = 143/199 (71.86%), Query Frame = 1


Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYD 60
           M N I+ LLA+EKL+GDNY  WKSN+N +LV +D KF+L EECP  P  NA++ AR+ YD
Sbjct: 1   MPNPIITLLATEKLDGDNYAKWKSNMNILLVCEDYKFLLAEECPLEPADNASKTAREPYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RWIKAN+KA+ ++LAS+SDVL KKH  M TA EIMESL+ MFG PS     +A++   N 
Sbjct: 61  RWIKANNKAKCFMLASMSDVLRKKHGEMETAYEIMESLEAMFGAPSEKACLDAVRAFMND 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           +MK+G+SV+ HVL+M+ H +  E N A IDE +QV  I+ SL   F +F  N+VMNK + 
Sbjct: 121 KMKKGSSVKAHVLNMIDHLHDTELNGARIDEATQVGIILESLSPDFHEFVNNLVMNKKKS 180

Query: 181 NLTALLNELQTYQSLLTNK 200
           NLT L+N+LQ ++S  TNK
Sbjct: 181 NLTELMNDLQNFES--TNK 197

[Close]

BLAST of CmoCh11G012060 vs. TrEMBL
Match: W9RVT2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006473 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 6.3e-49
Identity = 104/200 (52.00%), Postives = 140/200 (70.00%), Query Frame = 1


Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYD 60
           M+N I+ LLA+EK +GDNY  WKSN+N +LV +D KFVL EECP  P  NA++ AR+ YD
Sbjct: 1   MSNPIITLLATEKPDGDNYAKWKSNMNILLVCEDYKFVLVEECPQEPAVNASKTAREPYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RWIKAN+KA+ ++LAS+SDVL KKH+ M TA EIMESL+ +FG PS     +A++   N 
Sbjct: 61  RWIKANNKAKCFMLASMSDVLHKKHEEMETAYEIMESLEAIFGAPSEKAHLDAVRAFMND 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           +MK+G+SV+ HVL+M+ H + AE N A IDE +QV  I+ SL     +F  N VMNK + 
Sbjct: 121 KMKKGSSVKAHVLNMIDHLHDAELNGARIDEATQVGIILESLSPDCHEFVNNFVMNKKKS 180

Query: 181 NLTALLNELQTYQSLLTNKG 201
           N T L+N+LQ  +S    +G
Sbjct: 181 NFTKLMNDLQNLESANKRRG 200

[Close]

BLAST of CmoCh11G012060 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 312.0 bits (798), Expect = 8.1e-82
Identity = 155/212 (73.11%), Postives = 181/212 (85.38%), Query Frame = 1


Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYD 60
           M  SIVQLLASEKLNGDNY+ WKSNLNTILV+DDL+FVLTEECP  P  NANR  R+AYD
Sbjct: 1   MNTSIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RW+KANDKARVYILAS++DVLAKKHD + TAK IM+SL+ MFGQPS+SLRHEAIK+IY  
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           RMKEGTSVREHVLDMM+HFN+AE N   IDE +QVSFI+ SLPKSF  F+TN  +NKIE+
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEF 180

Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISKK 213
           NLT LLNELQ +Q+L  +KG+  EANVA++K+
Sbjct: 181 NLTTLLNELQRFQNLTLSKGKEVEANVAVTKR 212

[Close]

BLAST of CmoCh11G012060 vs. NCBI nr
Match: gi|659113933|ref|XP_008456826.1| (PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo])

HSP 1 Score: 271.6 bits (693), Expect = 1.2e-69
Identity = 131/212 (61.79%), Postives = 173/212 (81.60%), Query Frame = 1


Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYD 60
           MT++ + +L ++K NG+NY +WK+ +NT+L+IDDL+FVL E+CP    +NA R  R+AY+
Sbjct: 1   MTSATLNMLVADKFNGNNYASWKNTINTVLIIDDLRFVLVEKCPQVSAANATRTVREAYE 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RW KAN+KAR Y+LAS+S+VLAKK++ M TA+EIM+SL+ MFGQ S+ ++H+A+KYIYN 
Sbjct: 61  RWAKANEKARAYLLASLSEVLAKKNESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           RM +G  VREHVL+MMV+FNVAE N AVIDE +QVSFI+ SL +SF QFR+NVVMNKI Y
Sbjct: 121 RMNDGALVREHVLNMMVYFNVAEMNGAVIDEANQVSFILESLLESFLQFRSNVVMNKIAY 180

Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISKK 213
            LT LLNELQT++SL+  KGQ GEANVA S +
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTR 212

[Close]

BLAST of CmoCh11G012060 vs. NCBI nr
Match: gi|778697615|ref|XP_011654359.1| (PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus])

HSP 1 Score: 267.3 bits (682), Expect = 2.3e-68
Identity = 129/169 (76.33%), Postives = 149/169 (88.17%), Query Frame = 1


Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYD 60
           M +SIVQLLASEK+N DNY  WKSNLNTILV+DDL+FVLTEECP NP SNANR  R+AYD
Sbjct: 1   MNSSIVQLLASEKINDDNYAAWKSNLNTILVVDDLRFVLTEECPQNPASNANRTGREAYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RWIKAN+KARVYILAS+SDVLAKKH+ + TAKEIM+SL+GMFGQP +SLRHEA+KYIY  
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLRGMFGQPEWSLRHEAVKYIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQF 170
           RMKEGTSVREHVLDMM+HFN+A+ N  +I+E +QVSFI+ SLPKSF  F
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAQVNGGLIEEVNQVSFILESLPKSFIPF 169

[Close]

BLAST of CmoCh11G012060 vs. NCBI nr
Match: gi|659086056|ref|XP_008443743.1| (PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo])

HSP 1 Score: 249.2 bits (635), Expect = 6.4e-63
Identity = 120/159 (75.47%), Postives = 138/159 (86.79%), Query Frame = 1


Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYD 60
           M +SIVQLLA EKLNGDNY  WKSNLNTILV+DDL+FVLTEECP  P+SNA++ +R AYD
Sbjct: 1   MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPQTPSSNASQTSRKAYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RWIKAN+KARVYILAS+SDVLAKKH+ + TAKEIM SLKGMFGQP +SLRHE IKYIY  
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMNSLKGMFGQPKWSLRHETIKYIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIM 160
           RMKEGTS++EHVLDMM+HFN+ E N   IDE +QVSFI+
Sbjct: 121 RMKEGTSIKEHVLDMMMHFNIFEVNGGAIDEANQVSFIL 159

[Close]

BLAST of CmoCh11G012060 vs. NCBI nr
Match: gi|299474489|gb|ADJ18450.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 229.6 bits (584), Expect = 5.3e-57
Identity = 115/162 (70.99%), Postives = 134/162 (82.72%), Query Frame = 1


Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYD 60
           M  SIVQLLASEKLN DNY+ WKSNLNTILV++DL+F+LTEEC   P  NANR  R+AYD
Sbjct: 1   MNTSIVQLLASEKLNSDNYSAWKSNLNTILVVEDLRFILTEECHQAPALNANRTVREAYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RW KANDKA VYILAS++DVLAKK+D + T K IM+S + MFGQPS+SLRHEAIK IY  
Sbjct: 61  RWGKANDKACVYILASMTDVLAKKYDSIATTKGIMDSFREMFGQPSWSLRHEAIKRIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSL 163
           RMKEGTSVREHVLDMM+HFN+A+ +   IDE +QVSFI+ SL
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAKVHGGPIDEANQVSFILQSL 162

The following BLAST results are available for this feature:

BLAST of CmoCh11G012060 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh11G012060 vs. TrEMBL


Match Name	E-value	Identity	Description
E2GK51_BRYDI	5.6e-82	73.11	Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1	[more]
E2GK52_BRYDI	3.7e-57	70.99	Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1	[more]
W9SH28_9ROSA	1.2e-52	53.23	Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1	[more]
W9RXH5_9ROSA	8.8e-51	54.27	Uncharacterized protein OS=Morus notabilis GN=L484_001554 PE=4 SV=1	[more]
W9RVT2_9ROSA	6.3e-49	52.00	Uncharacterized protein OS=Morus notabilis GN=L484_006473 PE=4 SV=1	[more]

BLAST of CmoCh11G012060 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh11G012060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|299474487\|gb\|ADJ18449.1\|	8.1e-82	73.11	gag/pol protein [Bryonia dioica]	[more]
gi\|659113933\|ref\|XP_008456826.1\|	1.2e-69	61.79	PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo]	[more]
gi\|778697615\|ref\|XP_011654359.1\|	2.3e-68	76.33	PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus]	[more]
gi\|659086056\|ref\|XP_008443743.1\|	6.4e-63	75.47	PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo]	[more]
gi\|299474489\|gb\|ADJ18450.1\|	5.3e-57	70.99	gag/pol protein [Bryonia dioica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G012060.1	CmoCh11G012060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 12..191 score: 2.3
None	No IPR available	PANTHER	PTHR11439:SF192	SUBFAMILY NOT NAMED	coord: 12..191 score: 2.3
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 62..193 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G012060	Cucurbita maxima (Rimu)	cmacmoB112
CmoCh11G012060	Cucurbita pepo (Zucchini)	cmocpeB127
CmoCh11G012060	Silver-seed gourd	carcmoB1113