CmoCh11G011970 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh11G011970
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRetrotransposon protein, putative, Ty1-copia subclass
LocationCmo_Chr11 : 7044867 .. 7045184 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGGTACTATGGTGGTAGCACGTGACATAAAATCTGGAACTTTATACACCACTGCAGGGTGTATGAACATGGCTGCTGTTACTGAGAGTGCTTCAAATTCAAGTCTATGGCACAATAGACTTGGAAATATGAGCGCGAAAGAAATAAAGATGTTGGTTGCGAAACGAGTTTTAGAAGGTCTGAAATCTGTTGATGTGGATCGTTGTGAGAACTATGTTATGAGCAAGCAGAAACGAGTTAGCTTCACAAGGGCTGCTAGAGAATTGAAGAAAGTGCGGGCGAAAATGATCCATACAGATTTGGAGCAAGGTTAA

mRNA sequence

ATGAAGGGTACTATGGTGGTAGCACGTGACATAAAATCTGGAACTTTATACACCACTGCAGGGTGTATGAACATGGCTGCTGTTACTGAGAGTGCTTCAAATTCAAGTCTATGGCACAATAGACTTGGAAATATGAGCGCGAAAGAAATAAAGATGTTGGTTGCGAAACGAGTTTTAGAAGGTCTGAAATCTGTTGATGTGGATCGTTGTGAGAACTATGTTATGAGCAAGCAGAAACGAGTTAGCTTCACAAGGGCTGCTAGAGAATTGAAGAAAGTGCGGGCGAAAATGATCCATACAGATTTGGAGCAAGGTTAA

Coding sequence (CDS)

ATGAAGGGTACTATGGTGGTAGCACGTGACATAAAATCTGGAACTTTATACACCACTGCAGGGTGTATGAACATGGCTGCTGTTACTGAGAGTGCTTCAAATTCAAGTCTATGGCACAATAGACTTGGAAATATGAGCGCGAAAGAAATAAAGATGTTGGTTGCGAAACGAGTTTTAGAAGGTCTGAAATCTGTTGATGTGGATCGTTGTGAGAACTATGTTATGAGCAAGCAGAAACGAGTTAGCTTCACAAGGGCTGCTAGAGAATTGAAGAAAGTGCGGGCGAAAATGATCCATACAGATTTGGAGCAAGGTTAA
Homology
[Close]
BLAST of CmoCh11G011970 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.5e-07
Identity = 32/92 (34.78%), Postives = 50/92 (54.35%), Query Frame = 1 

Query: 2   KGTMVVARDIKSGTLYTTAG--CMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVL 61
           KG++V+A+ +  GTLY T    C       +   +  LWH R+G+MS K +++L  K ++
Sbjct: 387 KGSLVIAKGVARGTLYRTNAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLI 446

Query: 62  EGLKSVDVDRCENYVMSKQKRVSF-TRAAREL 91
              K   V  C+  +  KQ RVSF T + R+L
Sbjct: 447 SYAKGTTVKPCDYCLFGKQHRVSFQTSSERKL 478

[Close]
BLAST of CmoCh11G011970 vs. TrEMBL
Match: A5BBW7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021529 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-17
Identity = 47/101 (46.53%), Postives = 72/101 (71.29%), Query Frame = 1 

Query: 2   KGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEG 61
           KG  ++AR  K+GTLY T+   +  AV ++++++SLWH RLG+MS KE+KML++K  L  
Sbjct: 379 KGARILARGKKTGTLYMTSCPRDTIAVADASTDTSLWHRRLGHMSEKEMKMLLSKGKLSE 438

Query: 62  LKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTDL 103
           LKS+D D CE+Y++ KQK +SF +  R  K  + +++HTDL
Sbjct: 439 LKSIDFDMCESYILGKQKMMSFLKTGRTPKVEKLELVHTDL 479

[Close]
BLAST of CmoCh11G011970 vs. TrEMBL
Match: A0A151TNK0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_022239 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.3e-17
Identity = 49/101 (48.51%), Postives = 70/101 (69.31%), Query Frame = 1 

Query: 2   KGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEG 61
           KG ++VAR  K G+LY  A   NM AVTE+A+NS LWH RLG+MS K +K++  K  L  
Sbjct: 361 KGNLIVARGKKRGSLYMVAD-ENMIAVTEAANNSFLWHQRLGHMSEKGMKLMATKGKLSK 420

Query: 62  LKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTDL 103
           LK VDV  CE+ ++ KQ+++SF+R  + LK  R +++HTD+
Sbjct: 421 LKHVDVGTCEHCILGKQRKISFSRQGKTLKTERLELVHTDV 460

[Close]
BLAST of CmoCh11G011970 vs. TrEMBL
Match: A5B6M5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035792 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-16
Identity = 47/101 (46.53%), Postives = 71/101 (70.30%), Query Frame = 1 

Query: 2   KGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEG 61
           KG  V+AR  K+GTLY T+   +  AV ++++++SLWH RLG+MS K +KML++K  L  
Sbjct: 379 KGARVLARGKKTGTLYMTSCSRDTIAVADASTDTSLWHRRLGHMSEKGMKMLLSKGKLPE 438

Query: 62  LKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTDL 103
           LKS+D D CE+ ++ KQK+VSF +  R  K  + +++HTDL
Sbjct: 439 LKSIDFDMCESCILGKQKKVSFLKTGRTPKAEKLELVHTDL 479

[Close]
BLAST of CmoCh11G011970 vs. TrEMBL
Match: A5B0V5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008497 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-16
Identity = 48/101 (47.52%), Postives = 70/101 (69.31%), Query Frame = 1 

Query: 2   KGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEG 61
           KG  V+AR  K+GTLY T+   N  AV + ++++SLWH RLG+MS K +KML++K  L  
Sbjct: 342 KGARVLARGKKTGTLYMTSCPRNTIAVADVSTDTSLWHRRLGHMSEKGMKMLLSKGKLPE 401

Query: 62  LKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTDL 103
           LKS+D D CE+ ++ KQK+VSF +  R  K  + +++HTDL
Sbjct: 402 LKSIDFDMCESCILGKQKKVSFLKTGRTPKAEKLELVHTDL 442

[Close]
BLAST of CmoCh11G011970 vs. TrEMBL
Match: A5BWL7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038864 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-16
Identity = 48/101 (47.52%), Postives = 70/101 (69.31%), Query Frame = 1 

Query: 2   KGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEG 61
           KG  V+AR  K+GTLY T+   +  AV ++++N+SLWH RLG+MS K +KML++K  L  
Sbjct: 311 KGARVLARGKKTGTLYMTSCPRDTIAVADASTNTSLWHRRLGHMSEKGMKMLLSKGKLPE 370

Query: 62  LKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTDL 103
           LKS+D D CE+ ++ KQK VSF +  R  K  + +++HTDL
Sbjct: 371 LKSIDFDMCESCILGKQKNVSFLKIGRTPKAEKLELVHTDL 411

[Close]
BLAST of CmoCh11G011970 vs. NCBI nr
Match: gi|147866763|emb|CAN80991.1| (hypothetical protein VITISV_021529 [Vitis vinifera])

HSP 1 Score: 96.7 bits (239), Expect = 2.6e-17
Identity = 47/101 (46.53%), Postives = 72/101 (71.29%), Query Frame = 1 

Query: 2   KGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEG 61
           KG  ++AR  K+GTLY T+   +  AV ++++++SLWH RLG+MS KE+KML++K  L  
Sbjct: 379 KGARILARGKKTGTLYMTSCPRDTIAVADASTDTSLWHRRLGHMSEKEMKMLLSKGKLSE 438

Query: 62  LKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTDL 103
           LKS+D D CE+Y++ KQK +SF +  R  K  + +++HTDL
Sbjct: 439 LKSIDFDMCESYILGKQKMMSFLKTGRTPKVEKLELVHTDL 479

[Close]
BLAST of CmoCh11G011970 vs. NCBI nr
Match: gi|1012357422|gb|KYP68607.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 95.1 bits (235), Expect = 7.6e-17
Identity = 49/101 (48.51%), Postives = 70/101 (69.31%), Query Frame = 1 

Query: 2   KGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEG 61
           KG ++VAR  K G+LY  A   NM AVTE+A+NS LWH RLG+MS K +K++  K  L  
Sbjct: 361 KGNLIVARGKKRGSLYMVAD-ENMIAVTEAANNSFLWHQRLGHMSEKGMKLMATKGKLSK 420

Query: 62  LKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTDL 103
           LK VDV  CE+ ++ KQ+++SF+R  + LK  R +++HTD+
Sbjct: 421 LKHVDVGTCEHCILGKQRKISFSRQGKTLKTERLELVHTDV 460

[Close]
BLAST of CmoCh11G011970 vs. NCBI nr
Match: gi|147778396|emb|CAN76274.1| (hypothetical protein VITISV_008497 [Vitis vinifera])

HSP 1 Score: 94.0 bits (232), Expect = 1.7e-16
Identity = 48/101 (47.52%), Postives = 70/101 (69.31%), Query Frame = 1 

Query: 2   KGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEG 61
           KG  V+AR  K+GTLY T+   N  AV + ++++SLWH RLG+MS K +KML++K  L  
Sbjct: 342 KGARVLARGKKTGTLYMTSCPRNTIAVADVSTDTSLWHRRLGHMSEKGMKMLLSKGKLPE 401

Query: 62  LKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTDL 103
           LKS+D D CE+ ++ KQK+VSF +  R  K  + +++HTDL
Sbjct: 402 LKSIDFDMCESCILGKQKKVSFLKTGRTPKAEKLELVHTDL 442

[Close]
BLAST of CmoCh11G011970 vs. NCBI nr
Match: gi|147816618|emb|CAN68388.1| (hypothetical protein VITISV_038864 [Vitis vinifera])

HSP 1 Score: 94.0 bits (232), Expect = 1.7e-16
Identity = 48/101 (47.52%), Postives = 70/101 (69.31%), Query Frame = 1 

Query: 2   KGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEG 61
           KG  V+AR  K+GTLY T+   +  AV ++++N+SLWH RLG+MS K +KML++K  L  
Sbjct: 311 KGARVLARGKKTGTLYMTSCPRDTIAVADASTNTSLWHRRLGHMSEKGMKMLLSKGKLPE 370

Query: 62  LKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTDL 103
           LKS+D D CE+ ++ KQK VSF +  R  K  + +++HTDL
Sbjct: 371 LKSIDFDMCESCILGKQKNVSFLKIGRTPKAEKLELVHTDL 411

[Close]
BLAST of CmoCh11G011970 vs. NCBI nr
Match: gi|147782026|emb|CAN63196.1| (hypothetical protein VITISV_035792 [Vitis vinifera])

HSP 1 Score: 94.0 bits (232), Expect = 1.7e-16
Identity = 47/101 (46.53%), Postives = 71/101 (70.30%), Query Frame = 1 

Query: 2   KGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEG 61
           KG  V+AR  K+GTLY T+   +  AV ++++++SLWH RLG+MS K +KML++K  L  
Sbjct: 379 KGARVLARGKKTGTLYMTSCSRDTIAVADASTDTSLWHRRLGHMSEKGMKMLLSKGKLPE 438

Query: 62  LKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTDL 103
           LKS+D D CE+ ++ KQK+VSF +  R  K  + +++HTDL
Sbjct: 439 LKSIDFDMCESCILGKQKKVSFLKTGRTPKAEKLELVHTDL 479

The following BLAST results are available for this feature:
BLAST of CmoCh11G011970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC5.5e-0734.78Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of CmoCh11G011970 vs. TrEMBL
Match NameE-valueIdentityDescription
A5BBW7_VITVI1.8e-1746.53Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021529 PE=4 SV=1[more]
A0A151TNK0_CAJCA5.3e-1748.51Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A5B6M5_VITVI1.2e-1646.53Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035792 PE=4 SV=1[more]
A5B0V5_VITVI1.2e-1647.52Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008497 PE=4 SV=1[more]
A5BWL7_VITVI1.2e-1647.52Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038864 PE=4 SV=1[more]
BLAST of CmoCh11G011970 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh11G011970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147866763|emb|CAN80991.1|2.6e-1746.53hypothetical protein VITISV_021529 [Vitis vinifera][more]
gi|1012357422|gb|KYP68607.1|7.6e-1748.51Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|147778396|emb|CAN76274.1|1.7e-1647.52hypothetical protein VITISV_008497 [Vitis vinifera][more]
gi|147816618|emb|CAN68388.1|1.7e-1647.52hypothetical protein VITISV_038864 [Vitis vinifera][more]
gi|147782026|emb|CAN63196.1|1.7e-1646.53hypothetical protein VITISV_035792 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025724GAG-pre-integrase_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G011970.1CmoCh11G011970.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 27..78
score: 1.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh11G011970Cucumber (Chinese Long) v3cmocucB0134
CmoCh11G011970Watermelon (97103) v2cmowmbB083
CmoCh11G011970Wax gourdcmowgoB0090
CmoCh11G011970Cucumber (Gy14) v1cgycmoB0924
CmoCh11G011970Cucurbita maxima (Rimu)cmacmoB112
CmoCh11G011970Wild cucumber (PI 183967)cmocpiB119
CmoCh11G011970Cucumber (Chinese Long) v2cmocuB118
CmoCh11G011970Melon (DHL92) v3.5.1cmomeB117
CmoCh11G011970Watermelon (Charleston Gray)cmowcgB079
CmoCh11G011970Watermelon (97103) v1cmowmB079
CmoCh11G011970Cucurbita pepo (Zucchini)cmocpeB127
CmoCh11G011970Bottle gourd (USVL1VR-Ls)cmolsiB106
CmoCh11G011970Cucumber (Gy14) v2cgybcmoB272
CmoCh11G011970Melon (DHL92) v3.6.1cmomedB127
CmoCh11G011970Silver-seed gourdcarcmoB1113