CmoCh11G011340 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G011340
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Specific tissue protein 1, putative
Location	Cmo_Chr11 : 6401316 .. 6402357 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAAAGCAAAGAGCTTAGAGTTGTGAAAGATATGAAGATGGGTGAAATCTTTGGAATCACTCTCATTTTGCTTCTTATGGTATGAATTTTTGCATCATTTTCTAACTTAGAATTTTTATTTTTTATTCGAGTCTTTTAAGACTTCGTTCTTTAACTTACGAGAATTTTTCTAAAGTTTTGAAAATAAACTATGTAACCCGAATCTAATAAAGTGTAATAATCTTTTTTTTTTCTTGTTATATGGTCATTAGTTCGTCAACAACATAGAGTCAAGACATGAACCAGGAAAACGCTTGAGCAATGTGGAAGGGAAAGAGGATAGCATTGAAGGCAAGCAACCTGAAAATGAAAAACGGTTTGTTAAGGATATAGAACCAAGACCAAGTGCTACCTTTTATCCAAAAGAGGCGGAAAAGAAATCATTTTTTAAAGACATTGAGCCACGACCAAGTGCCACATTTTACCCAAATGAAAATGTCAATGTCATACTTTTTGACAAAGATATTGAGCCACGCCCAAGTGCCACATTTTACCCAAATGAAAATGTCAAAACCATGCTTTTTGACAAAGATATTGAGCCACGACCAAGTGCCACATTTTACCCAAATGACAATGTTAAAACCTTAGTTTTTGACAAAGATATCGAGCCACGACCAAGTGCCACATTTTACCCAAATGACAATGTCAAAACCTTAGTTTTTGACAAAGATATCGAGCCACGACCAAGTGTCACATTTTACCCAAATGACAATGTCAAAACCATGCTTTTTGACAAAGATATTGAGCCACGACCAAGTGCCACTTTTTACCCTAAAGACAATGTCAAGACTATACTTTTTGACAAAGATATTGAGCTACGACCAAGTGCCTCTTTTTACCCAAATGACAATGTCAAGACTATACTTTTTGACAAAGATATTGAGCCACGACCAAGCATCTCATCTTACCCAAGTACCACAGCGTATCCTCACGATCACAACCCAAAAGTTTCCTCTACTGATTGTCACGACGAATCTGACATACAGCTCCCACGAGCTTAA

mRNA sequence

AAGAAAAGCAAAGAGCTTAGAGTTGTGAAAGATATGAAGATGGGTGAAATCTTTGGAATCACTCTCATTTTGCTTCTTATGTTCGTCAACAACATAGAGTCAAGACATGAACCAGGAAAACGCTTGAGCAATGTGGAAGGGAAAGAGGATAGCATTGAAGGCAAGCAACCTGAAAATGAAAAACGGTTTGTTAAGGATATAGAACCAAGACCAAGTGCTACCTTTTATCCAAAAGAGGCGGAAAAGAAATCATTTTTTAAAGACATTGAGCCACGACCAAGTGCCACATTTTACCCAAATGAAAATGTCAATGTCATACTTTTTGACAAAGATATTGAGCCACGCCCAAGTGCCACATTTTACCCAAATGAAAATGTCAAAACCATGCTTTTTGACAAAGATATTGAGCCACGACCAAGTGCCACATTTTACCCAAATGACAATGTTAAAACCTTAGTTTTTGACAAAGATATCGAGCCACGACCAAGTGCCACATTTTACCCAAATGACAATGTCAAAACCTTAGTTTTTGACAAAGATATCGAGCCACGACCAAGTGTCACATTTTACCCAAATGACAATGTCAAAACCATGCTTTTTGACAAAGATATTGAGCCACGACCAAGTGCCACTTTTTACCCTAAAGACAATGTCAAGACTATACTTTTTGACAAAGATATTGAGCTACGACCAAGTGCCTCTTTTTACCCAAATGACAATGTCAAGACTATACTTTTTGACAAAGATATTGAGCCACGACCAAGCATCTCATCTTACCCAAGTACCACAGCGTATCCTCACGATCACAACCCAAAAGTTTCCTCTACTGATTGTCACGACGAATCTGACATACAGCTCCCACGAGCTTAA

Coding sequence (CDS)

ATGAAGATGGGTGAAATCTTTGGAATCACTCTCATTTTGCTTCTTATGTTCGTCAACAACATAGAGTCAAGACATGAACCAGGAAAACGCTTGAGCAATGTGGAAGGGAAAGAGGATAGCATTGAAGGCAAGCAACCTGAAAATGAAAAACGGTTTGTTAAGGATATAGAACCAAGACCAAGTGCTACCTTTTATCCAAAAGAGGCGGAAAAGAAATCATTTTTTAAAGACATTGAGCCACGACCAAGTGCCACATTTTACCCAAATGAAAATGTCAATGTCATACTTTTTGACAAAGATATTGAGCCACGCCCAAGTGCCACATTTTACCCAAATGAAAATGTCAAAACCATGCTTTTTGACAAAGATATTGAGCCACGACCAAGTGCCACATTTTACCCAAATGACAATGTTAAAACCTTAGTTTTTGACAAAGATATCGAGCCACGACCAAGTGCCACATTTTACCCAAATGACAATGTCAAAACCTTAGTTTTTGACAAAGATATCGAGCCACGACCAAGTGTCACATTTTACCCAAATGACAATGTCAAAACCATGCTTTTTGACAAAGATATTGAGCCACGACCAAGTGCCACTTTTTACCCTAAAGACAATGTCAAGACTATACTTTTTGACAAAGATATTGAGCTACGACCAAGTGCCTCTTTTTACCCAAATGACAATGTCAAGACTATACTTTTTGACAAAGATATTGAGCCACGACCAAGCATCTCATCTTACCCAAGTACCACAGCGTATCCTCACGATCACAACCCAAAAGTTTCCTCTACTGATTGTCACGACGAATCTGACATACAGCTCCCACGAGCTTAA

Homology

[Close]

BLAST of CmoCh11G011340 vs. TrEMBL
Match: A0A0A0K3R4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G262890 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 4.7e-89
Identity = 171/280 (61.07%), Postives = 196/280 (70.00%), Query Frame = 1


Query: 1   MKMGEIFGITLILLLMFVNNIESRHEPGKRLSNV----------EGKEDSIEGKQPENEK 60
           MK+   FGITLILLL+F N IESR+EPG +  NV          + KED  + K  +NE 
Sbjct: 1   MKIQPTFGITLILLLLFFNGIESRYEPGGQWKNVIEDDSLPVVSQEKEDCFKYKSLKNEN 60

Query: 61  RFVKDIEPRPSATFYPKEAEKKSFF-KDIEPRPSATFYPNENVNVILFDKDIEPRPSATF 120
            F  D +PRPS TFYP +  K  FF KDIEPRPSATFYPN+      F KDIEPRPSATF
Sbjct: 61  TFFNDTKPRPSITFYPNDESKDRFFTKDIEPRPSATFYPNDESKDRFFTKDIEPRPSATF 120

Query: 121 YPNENVKTMLFDKDIEPRPSATFYPNDNVKTLVFDKDIEPRPSATFYPNDNVKTLVFDKD 180
           YPN++ K  LF KDIEPRPSATFYPND+ K  +F KDIEPRPSATFYPND+ K  +F KD
Sbjct: 121 YPNDDTKNKLFTKDIEPRPSATFYPNDDTKNKLFTKDIEPRPSATFYPNDDTKNKLFTKD 180

Query: 181 IEPRPSVTFYPNDNVKTMLFDKDIEPRPSATFYPKDNVKTILFDKDIELRPSASFYPNDN 240
           IEPRPS TFYPND+ K  LF KDIEPRPSATFYP D+ K  LF KDIE RPSA+FYPND+
Sbjct: 181 IEPRPSATFYPNDDTKNKLFTKDIEPRPSATFYPNDDTKNKLFTKDIEPRPSATFYPNDD 240

Query: 241 VKTILFDKDIEPRPSISSYPS----TTAYPHDHNPKVSST 266
            K  LF KDIEPRPS + YP+       +  D  P+ S+T
Sbjct: 241 TKNKLFTKDIEPRPSATFYPNDDTKNKLFTKDIEPRPSAT 280

[Close]

BLAST of CmoCh11G011340 vs. TrEMBL
Match: A0A0A0K958_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G262900 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 2.2e-78
Identity = 154/256 (60.16%), Postives = 177/256 (69.14%), Query Frame = 1


Query: 1   MKMGEIFGITLILLLMFVNNIESRHEPGKRLSNV----------EGKEDSIEGKQPENEK 60
           MK+   FGITL LLL+F N IESR+EPG +  NV          + KED  + K  +NE 
Sbjct: 1   MKIKPTFGITLFLLLLFFNGIESRYEPGGQWKNVIEDDSLPVVSQEKEDCFKYKSLKNEN 60

Query: 61  RFVKDIEPRPSATFYPKEAEKKSFF-KDIEPRPSATFYPNENVNVILFDKDIEPRPSATF 120
            F  DI+PRPS TFYP +  K  FF KDIEPRPS TFYPN++    LF KDIEPRPS TF
Sbjct: 61  TFFNDIKPRPSITFYPNDGSKDKFFIKDIEPRPSLTFYPNDDTKNKLFTKDIEPRPSLTF 120

Query: 121 YPNENVKTMLFDKDIEPRPSATFYPNDNVKTLVFDKDIEPRPSATFYPNDNVKTLVFDKD 180
           YPN++ K  LF KDIEPRPS TFYPND+ K  +F KDIEPRPS TFYPND+ K  +F KD
Sbjct: 121 YPNDDTKNKLFTKDIEPRPSLTFYPNDDTKNKLFTKDIEPRPSLTFYPNDDTKNKLFTKD 180

Query: 181 IEPRPSVTFYPNDNVKTMLFDKDIEPRPSATFYPKDNVKTILFDKDIELRPSASFYPNDN 240
           IEPRPS+TFYPND  K   F KDIEPRPS TFYP D  K  +F KDIE RPS +FYP++ 
Sbjct: 181 IEPRPSLTFYPNDESKDKFFIKDIEPRPSTTFYPNDESKDKVFIKDIEPRPSLTFYPSNE 240

Query: 241 VKTILFDKDIEPRPSI 246
            K  LF K+IE  PSI
Sbjct: 241 NKDKLFTKNIEV-PSI 255

[Close]

BLAST of CmoCh11G011340 vs. TrEMBL
Match: A0A0A0K5Y0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G259390 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 2.7e-60
Identity = 110/227 (48.46%), Postives = 163/227 (71.81%), Query Frame = 1


Query: 52  FVKDIEPRPSATFYPKEAEKKSFFKDIEPRPSATFYPNENVNVILFDKDIEPRPSATFYP 111
           FVKDIE +  A FY ++  K+   KDIEPRP+ +FYP++     LF +D+EPRP+ +FYP
Sbjct: 136 FVKDIERQLRARFY-RDDNKRKLAKDIEPRPNVSFYPDDT-KTKLFAEDLEPRPNVSFYP 195

Query: 112 NENVKTMLFDKDIEPRPSATFYPNDNVKTLVFDKDIEPRPSATFYPNDNVKTLVFDKDIE 171
           ++  KT LF +D+EPRP+ +FYP+D  KT +F +D+EPRP+ +FYP+D+ KT +F +D+E
Sbjct: 196 DDETKTKLFAEDVEPRPNVSFYPDDETKTKLFAEDVEPRPNVSFYPDDDTKTKLFVEDVE 255

Query: 172 PRPSVTFYPNDNVKTMLFDKDIEPRPSATFYPKDNVKTILFDKDIELRPSASFYPNDNVK 231
           PRP+V+FYP+D  KT LF +D+EPRP++ FYP D++KT L  ++IE RP+ SFYP+D+ K
Sbjct: 256 PRPNVSFYPDDETKTKLFAEDVEPRPNSFFYPDDDIKTKLLVQEIEPRPNVSFYPDDDTK 315

Query: 232 TILFDKDIEPRPSISSYPSTTAYPHDHNPKVSSTDCHDESDIQLPRA 279
           T L  +DIEPRP++S YP           ++S+   H E+ +Q+ +A
Sbjct: 316 TKLLAEDIEPRPNVSFYPDNL----KAKEQLSAHSHHGEAGLQVAQA 356

[Close]

BLAST of CmoCh11G011340 vs. TrEMBL
Match: A0A164VLK0_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_022107 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.8e-35
Identity = 102/227 (44.93%), Postives = 131/227 (57.71%), Query Frame = 1


Query: 48  NEKRFVKDIEPRPSATFY---PKEAEKKSFFKDIEPRPSATFYPNENV--NVILFDKDIE 107
           N + F KDIEPRP+ + Y    K  +  SF KDIEPRP+ + Y +E    N   FDK+IE
Sbjct: 231 NNESFDKDIEPRPNISSYHDDEKLQKSDSFSKDIEPRPNISSYHDEEKLRNDESFDKNIE 290

Query: 108 PRPSATFYPNENVKTM--LFDKDIEPRPSATFYPNDNV--KTLVFDKDIEPRPSATFYPN 167
           PRP+ + Y +    T    FDKDIEPRP+ + Y +D    K+  F KDIEPRP+ + Y +
Sbjct: 291 PRPNISAYHDGEKLTENESFDKDIEPRPNISSYHDDEKLKKSDSFSKDIEPRPNISSYHD 350

Query: 168 DNV--KTLVFDKDIEPRPSVTFYPNDNV--KTMLFDKDIEPRPSATFYPKDNVKTI--LF 227
           D     T  FDKDIE RP+++ Y +D    K   F KDIEPRP+ + Y  D   T    F
Sbjct: 351 DEKLRDTESFDKDIEARPNISSYHDDEKLKKNDSFSKDIEPRPNISAYQGDKKLTENESF 410

Query: 228 DKDIELRPSASFYPNDNV--KTILFDKDIEPRPSISSYPSTTAYPHD 258
            +DIE RP+ S Y +D    KT  F KDIEPRP+IS+Y    A   D
Sbjct: 411 IRDIEPRPNISSYHDDEKLKKTDAFTKDIEPRPNISAYNDNEALKED 457

[Close]

BLAST of CmoCh11G011340 vs. TrEMBL
Match: A0A164VLH6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_022110 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.8e-33
Identity = 108/246 (43.90%), Postives = 146/246 (59.35%), Query Frame = 1


Query: 48  NEKRFVKDIEPRPSATFYPKEAEKK---SFFKDIEPRPS-ATFYPNENV-NVILFDKDIE 107
           N + F KDIEPRP+ + Y  + + K   S   DIEPRP+ ++++ NE + N   FDKDIE
Sbjct: 147 NNESFDKDIEPRPNVSAYHDDEKLKKGNSNMDDIEPRPNISSYHDNEKLRNNESFDKDIE 206

Query: 108 PRPS-ATFYPNENVK-TMLFDKDIEPRPSATFYPNDNVK---TLVFDKDIEPRPSATFYP 167
           PRP+ ++++ +E +K +  F KDIEPRP+ + Y +D  K      FDKDIEPRP+ + Y 
Sbjct: 207 PRPNVSSYHDDEKLKESDSFSKDIEPRPNVSSY-HDGEKLRDNESFDKDIEPRPNVSSYH 266

Query: 168 NDN--VKTLVFDKDIEPRPSVTFYPNDNVK---TMLFDKDIEPRPSATFYPKDN--VKTI 227
           +D    K+  F KDIEPRP+V+ Y +D  K      FDKDIEPRP+ + Y  D    K+ 
Sbjct: 267 DDANLKKSDSFSKDIEPRPNVSSY-HDGEKLRDNESFDKDIEPRPNVSSYHDDANLKKSD 326

Query: 228 LFDKDIELRPSASFYPNDN--VKTILFDKDIEPRPSISSY------PSTTAYPHDHNPK- 267
            F KDIE RP+ S Y  D    +   F KDIEPRP++SSY        T A+  D  P+ 
Sbjct: 327 SFSKDIEPRPNISAYQGDKKLTENESFIKDIEPRPNVSSYHDDDKLTKTDAFTKDIEPRP 386

[Close]

BLAST of CmoCh11G011340 vs. NCBI nr
Match: gi|778726210|ref|XP_011659075.1| (PREDICTED: proteoglycan 4-like isoform X2 [Cucumis sativus])

HSP 1 Score: 335.9 bits (860), Expect = 6.8e-89
Identity = 171/280 (61.07%), Postives = 196/280 (70.00%), Query Frame = 1


Query: 1   MKMGEIFGITLILLLMFVNNIESRHEPGKRLSNV----------EGKEDSIEGKQPENEK 60
           MK+   FGITLILLL+F N IESR+EPG +  NV          + KED  + K  +NE 
Sbjct: 1   MKIQPTFGITLILLLLFFNGIESRYEPGGQWKNVIEDDSLPVVSQEKEDCFKYKSLKNEN 60

Query: 61  RFVKDIEPRPSATFYPKEAEKKSFF-KDIEPRPSATFYPNENVNVILFDKDIEPRPSATF 120
            F  D +PRPS TFYP +  K  FF KDIEPRPSATFYPN+      F KDIEPRPSATF
Sbjct: 61  TFFNDTKPRPSITFYPNDESKDRFFTKDIEPRPSATFYPNDESKDRFFTKDIEPRPSATF 120

Query: 121 YPNENVKTMLFDKDIEPRPSATFYPNDNVKTLVFDKDIEPRPSATFYPNDNVKTLVFDKD 180
           YPN++ K  LF KDIEPRPSATFYPND+ K  +F KDIEPRPSATFYPND+ K  +F KD
Sbjct: 121 YPNDDTKNKLFTKDIEPRPSATFYPNDDTKNKLFTKDIEPRPSATFYPNDDTKNKLFTKD 180

Query: 181 IEPRPSVTFYPNDNVKTMLFDKDIEPRPSATFYPKDNVKTILFDKDIELRPSASFYPNDN 240
           IEPRPS TFYPND+ K  LF KDIEPRPSATFYP D+ K  LF KDIE RPSA+FYPND+
Sbjct: 181 IEPRPSATFYPNDDTKNKLFTKDIEPRPSATFYPNDDTKNKLFTKDIEPRPSATFYPNDD 240

Query: 241 VKTILFDKDIEPRPSISSYPS----TTAYPHDHNPKVSST 266
            K  LF KDIEPRPS + YP+       +  D  P+ S+T
Sbjct: 241 TKNKLFTKDIEPRPSATFYPNDDTKNKLFTKDIEPRPSAT 280

[Close]

BLAST of CmoCh11G011340 vs. NCBI nr
Match: gi|700189107|gb|KGN44340.1| (hypothetical protein Csa_7G262890 [Cucumis sativus])

HSP 1 Score: 335.9 bits (860), Expect = 6.8e-89
Identity = 171/280 (61.07%), Postives = 196/280 (70.00%), Query Frame = 1


Query: 1   MKMGEIFGITLILLLMFVNNIESRHEPGKRLSNV----------EGKEDSIEGKQPENEK 60
           MK+   FGITLILLL+F N IESR+EPG +  NV          + KED  + K  +NE 
Sbjct: 1   MKIQPTFGITLILLLLFFNGIESRYEPGGQWKNVIEDDSLPVVSQEKEDCFKYKSLKNEN 60

Query: 61  RFVKDIEPRPSATFYPKEAEKKSFF-KDIEPRPSATFYPNENVNVILFDKDIEPRPSATF 120
            F  D +PRPS TFYP +  K  FF KDIEPRPSATFYPN+      F KDIEPRPSATF
Sbjct: 61  TFFNDTKPRPSITFYPNDESKDRFFTKDIEPRPSATFYPNDESKDRFFTKDIEPRPSATF 120

Query: 121 YPNENVKTMLFDKDIEPRPSATFYPNDNVKTLVFDKDIEPRPSATFYPNDNVKTLVFDKD 180
           YPN++ K  LF KDIEPRPSATFYPND+ K  +F KDIEPRPSATFYPND+ K  +F KD
Sbjct: 121 YPNDDTKNKLFTKDIEPRPSATFYPNDDTKNKLFTKDIEPRPSATFYPNDDTKNKLFTKD 180

Query: 181 IEPRPSVTFYPNDNVKTMLFDKDIEPRPSATFYPKDNVKTILFDKDIELRPSASFYPNDN 240
           IEPRPS TFYPND+ K  LF KDIEPRPSATFYP D+ K  LF KDIE RPSA+FYPND+
Sbjct: 181 IEPRPSATFYPNDDTKNKLFTKDIEPRPSATFYPNDDTKNKLFTKDIEPRPSATFYPNDD 240

Query: 241 VKTILFDKDIEPRPSISSYPS----TTAYPHDHNPKVSST 266
            K  LF KDIEPRPS + YP+       +  D  P+ S+T
Sbjct: 241 TKNKLFTKDIEPRPSATFYPNDDTKNKLFTKDIEPRPSAT 280

[Close]

BLAST of CmoCh11G011340 vs. NCBI nr
Match: gi|778726206|ref|XP_011659073.1| (PREDICTED: proteoglycan 4-like isoform X1 [Cucumis sativus])

HSP 1 Score: 335.9 bits (860), Expect = 6.8e-89
Identity = 171/280 (61.07%), Postives = 196/280 (70.00%), Query Frame = 1


Query: 1   MKMGEIFGITLILLLMFVNNIESRHEPGKRLSNV----------EGKEDSIEGKQPENEK 60
           MK+   FGITLILLL+F N IESR+EPG +  NV          + KED  + K  +NE 
Sbjct: 1   MKIQPTFGITLILLLLFFNGIESRYEPGGQWKNVIEDDSLPVVSQEKEDCFKYKSLKNEN 60

Query: 61  RFVKDIEPRPSATFYPKEAEKKSFF-KDIEPRPSATFYPNENVNVILFDKDIEPRPSATF 120
            F  D +PRPS TFYP +  K  FF KDIEPRPSATFYPN+      F KDIEPRPSATF
Sbjct: 61  TFFNDTKPRPSITFYPNDESKDRFFTKDIEPRPSATFYPNDESKDRFFTKDIEPRPSATF 120

Query: 121 YPNENVKTMLFDKDIEPRPSATFYPNDNVKTLVFDKDIEPRPSATFYPNDNVKTLVFDKD 180
           YPN++ K  LF KDIEPRPSATFYPND+ K  +F KDIEPRPSATFYPND+ K  +F KD
Sbjct: 121 YPNDDTKNKLFTKDIEPRPSATFYPNDDTKNKLFTKDIEPRPSATFYPNDDTKNKLFTKD 180

Query: 181 IEPRPSVTFYPNDNVKTMLFDKDIEPRPSATFYPKDNVKTILFDKDIELRPSASFYPNDN 240
           IEPRPS TFYPND+ K  LF KDIEPRPSATFYP D+ K  LF KDIE RPSA+FYPND+
Sbjct: 181 IEPRPSATFYPNDDTKNKLFTKDIEPRPSATFYPNDDTKNKLFTKDIEPRPSATFYPNDD 240

Query: 241 VKTILFDKDIEPRPSISSYPS----TTAYPHDHNPKVSST 266
            K  LF KDIEPRPS + YP+       +  D  P+ S+T
Sbjct: 241 TKNKLFTKDIEPRPSATFYPNDDTKNKLFTKDIEPRPSAT 280

[Close]

BLAST of CmoCh11G011340 vs. NCBI nr
Match: gi|700189108|gb|KGN44341.1| (hypothetical protein Csa_7G262900 [Cucumis sativus])

HSP 1 Score: 300.4 bits (768), Expect = 3.2e-78
Identity = 154/256 (60.16%), Postives = 177/256 (69.14%), Query Frame = 1


Query: 1   MKMGEIFGITLILLLMFVNNIESRHEPGKRLSNV----------EGKEDSIEGKQPENEK 60
           MK+   FGITL LLL+F N IESR+EPG +  NV          + KED  + K  +NE 
Sbjct: 1   MKIKPTFGITLFLLLLFFNGIESRYEPGGQWKNVIEDDSLPVVSQEKEDCFKYKSLKNEN 60

Query: 61  RFVKDIEPRPSATFYPKEAEKKSFF-KDIEPRPSATFYPNENVNVILFDKDIEPRPSATF 120
            F  DI+PRPS TFYP +  K  FF KDIEPRPS TFYPN++    LF KDIEPRPS TF
Sbjct: 61  TFFNDIKPRPSITFYPNDGSKDKFFIKDIEPRPSLTFYPNDDTKNKLFTKDIEPRPSLTF 120

Query: 121 YPNENVKTMLFDKDIEPRPSATFYPNDNVKTLVFDKDIEPRPSATFYPNDNVKTLVFDKD 180
           YPN++ K  LF KDIEPRPS TFYPND+ K  +F KDIEPRPS TFYPND+ K  +F KD
Sbjct: 121 YPNDDTKNKLFTKDIEPRPSLTFYPNDDTKNKLFTKDIEPRPSLTFYPNDDTKNKLFTKD 180

Query: 181 IEPRPSVTFYPNDNVKTMLFDKDIEPRPSATFYPKDNVKTILFDKDIELRPSASFYPNDN 240
           IEPRPS+TFYPND  K   F KDIEPRPS TFYP D  K  +F KDIE RPS +FYP++ 
Sbjct: 181 IEPRPSLTFYPNDESKDKFFIKDIEPRPSTTFYPNDESKDKVFIKDIEPRPSLTFYPSNE 240

Query: 241 VKTILFDKDIEPRPSI 246
            K  LF K+IE  PSI
Sbjct: 241 NKDKLFTKNIEV-PSI 255

[Close]

BLAST of CmoCh11G011340 vs. NCBI nr
Match: gi|778726203|ref|XP_004151481.2| (PREDICTED: uncharacterized protein LOC101212185 [Cucumis sativus])

HSP 1 Score: 240.4 bits (612), Expect = 3.9e-60
Identity = 110/227 (48.46%), Postives = 163/227 (71.81%), Query Frame = 1


Query: 52  FVKDIEPRPSATFYPKEAEKKSFFKDIEPRPSATFYPNENVNVILFDKDIEPRPSATFYP 111
           FVKDIE +  A FY ++  K+   KDIEPRP+ +FYP++     LF +D+EPRP+ +FYP
Sbjct: 136 FVKDIERQLRARFY-RDDNKRKLAKDIEPRPNVSFYPDDT-KTKLFAEDLEPRPNVSFYP 195

Query: 112 NENVKTMLFDKDIEPRPSATFYPNDNVKTLVFDKDIEPRPSATFYPNDNVKTLVFDKDIE 171
           ++  KT LF +D+EPRP+ +FYP+D  KT +F +D+EPRP+ +FYP+D+ KT +F +D+E
Sbjct: 196 DDETKTKLFAEDVEPRPNVSFYPDDETKTKLFAEDVEPRPNVSFYPDDDTKTKLFVEDVE 255

Query: 172 PRPSVTFYPNDNVKTMLFDKDIEPRPSATFYPKDNVKTILFDKDIELRPSASFYPNDNVK 231
           PRP+V+FYP+D  KT LF +D+EPRP++ FYP D++KT L  ++IE RP+ SFYP+D+ K
Sbjct: 256 PRPNVSFYPDDETKTKLFAEDVEPRPNSFFYPDDDIKTKLLVQEIEPRPNVSFYPDDDTK 315

Query: 232 TILFDKDIEPRPSISSYPSTTAYPHDHNPKVSSTDCHDESDIQLPRA 279
           T L  +DIEPRP++S YP           ++S+   H E+ +Q+ +A
Sbjct: 316 TKLLAEDIEPRPNVSFYPDNL----KAKEQLSAHSHHGEAGLQVAQA 356

The following BLAST results are available for this feature:

BLAST of CmoCh11G011340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh11G011340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3R4_CUCSA	4.7e-89	61.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G262890 PE=4 SV=1	[more]
A0A0A0K958_CUCSA	2.2e-78	60.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G262900 PE=4 SV=1	[more]
A0A0A0K5Y0_CUCSA	2.7e-60	48.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G259390 PE=4 SV=1	[more]
A0A164VLK0_DAUCA	8.8e-35	44.93	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_022107 PE=4 SV=1	[more]
A0A164VLH6_DAUCA	2.8e-33	43.90	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_022110 PE=4 SV=1	[more]

BLAST of CmoCh11G011340 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh11G011340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778726210\|ref\|XP_011659075.1\|	6.8e-89	61.07	PREDICTED: proteoglycan 4-like isoform X2 [Cucumis sativus]	[more]
gi\|700189107\|gb\|KGN44340.1\|	6.8e-89	61.07	hypothetical protein Csa_7G262890 [Cucumis sativus]	[more]
gi\|778726206\|ref\|XP_011659073.1\|	6.8e-89	61.07	PREDICTED: proteoglycan 4-like isoform X1 [Cucumis sativus]	[more]
gi\|700189108\|gb\|KGN44341.1\|	3.2e-78	60.16	hypothetical protein Csa_7G262900 [Cucumis sativus]	[more]
gi\|778726203\|ref\|XP_004151481.2\|	3.9e-60	48.46	PREDICTED: uncharacterized protein LOC101212185 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR024489	Organ_specific_prot
IPR026906	LRR_5

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G011340.1	CmoCh11G011340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024489	Organ specific protein	PFAM	PF10950	DUF2775	coord: 96..156 score: 2.2E-7coord: 43..87 score: 1.2E-7coord: 142..202 score: 3.6E-8coord: 188..248 score: 5.
IPR026906	Leucine rich repeat 5	PFAM	PF13306	LRR_5	coord: 63..179 score: 5.
None	No IPR available	PANTHER	PTHR33731	FAMILY NOT NAMED	coord: 21..251 score: 1.4
None	No IPR available	PANTHER	PTHR33731:SF1	SUBFAMILY NOT NAMED	coord: 21..251 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G011340	Cucumber (Chinese Long) v3	cmocucB0163
CmoCh11G011340	Watermelon (97103) v2	cmowmbB089
CmoCh11G011340	Wax gourd	cmowgoB0121
CmoCh11G011340	Cucurbita moschata (Rifu)	cmocmoB120
CmoCh11G011340	Cucumber (Gy14) v1	cgycmoB0673
CmoCh11G011340	Cucurbita maxima (Rimu)	cmacmoB112
CmoCh11G011340	Cucurbita maxima (Rimu)	cmacmoB495
CmoCh11G011340	Wild cucumber (PI 183967)	cmocpiB140
CmoCh11G011340	Cucumber (Chinese Long) v2	cmocuB141
CmoCh11G011340	Melon (DHL92) v3.5.1	cmomeB086
CmoCh11G011340	Watermelon (Charleston Gray)	cmowcgB089
CmoCh11G011340	Cucurbita pepo (Zucchini)	cmocpeB127
CmoCh11G011340	Bottle gourd (USVL1VR-Ls)	cmolsiB090
CmoCh11G011340	Cucumber (Gy14) v2	cgybcmoB884
CmoCh11G011340	Melon (DHL92) v3.6.1	cmomedB092