CmoCh11G011310 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G011310
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	SWI/SNF complex subunit SWI3D-like protein
Location	Cmo_Chr11 : 6379084 .. 6380778 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTTACTACTTTGCTTGGAGGTGCACGTCAACTTTGTTGATTCTAGATTCTTGCTATCTTTTTCCTTTTCTTCTTTTATATTCAGTTCAAATAATTTTCTATCCTAGCTAGAAAACGTTGGTTTATCTTGAACCTGCTTTAGCCTTCTAGAAGTTTTCTGTGAGATATGTGTTTACATGAACCAAGTTTTGGCAGTTATCTTTATTACAAGTTCTCATTCATTGACTTCTGTTGTTGCCCAGAATTACCTTCAGTTAGGTACTATCATGTTTATCATATTTATAGATGGAGCAGAAATGCTTAAGCCTACTCTTTGTTCTTATCTGGAATTAGCACTCCCTATAATCATAAATTTTATTCCTGGTTGTTTAAATTATTAAATACCTCCTTTTCAGGCTGCATTCCTTGCACGCTTAGTTGGATCTGATGTTGTCAGTGCATCAGCTCATTTTTCCTTGAAAAGCATGTCTCAGAAATCTCCCAGTTTAGATCTGGCTACAAGACACTGCTTTATTTTAGAAGATCCACTAGATGACAAGGCACAAGCTAATTCAGAGAGGTACTTGACGTTGAGACTTGACATGTTTGTTTCAGTTTAGTTCTATTCTTTGATCACAACTGATACTATTGCAGGGTTGTCAATGTGGAAGCTCAGCAAAATGTCAATGAACAGTGTGAAAAACAGAGGAAAGACAATTCTACTTCAGTTTTAGATGATAGTGCCTTATCGACTACTAACAGTATTTACAAAAATGGAGAATCTGTGACAGAGGAAACTACAATGGAGAATAGAAATTCTGCAGATGCTACTAAAGAACACGATCCAATGGTTAATCATGGTTCAGATGTAACTAATAAATTGAAAGAACTGACAGAACCAGAAGTGCCCAAGGATGATAGAACAAGCATTGTTAAGGAAACTGAAAATATGGAATCAAAATTGACAACAAATACAGTTCAAAAATTGGGAGAAGAAACTTCTGTTGAAAAGCCATCACAATCTACGTTGTTATCAAAGGATATACATATGTCAGATCTACGGAATGCTGAAAAAACTGAGATTCAGAAACAAGTTCCATCTCCTTCTGTCAATACTTCAAAAATAGATGATGTGCCAAATCCTTTACCTTCCGTGAATGAACTTCAGCCACTGGTTGCTGCCAATTCAGTGAAAGTAGCCTCAAGTGATGTAGCTATGGTATCTGATCCTCGAGATAAGAATGAACCTGCACAAACTGAAACATCTAAATCTGTGGTTGACCAGGGAGCAAGCAAGGTCTCTGATTCTTTGCCCACAGAAGAGAATGCACCTCCACAGCCAGTTAAACCAAATCCAGTTATTGATAAAGGAACAGGTGCGTGTTTCTTTTGTAGTTTTCCTCTAGTTTTAATTTTGTAGTCTATGGACCTCCCACCAGGCAGGTTACATTTTTTAGTTTTTTAAGAAACTGTTCAAGGCTTTCCAAAGTTTGCACGTTCCAAGGGGATGGGGAAATACAAGCTATTTCCTATTAAACAATATTGACTTCGATTTGTTTTTAGGAACTTTATCATGCACTGTGATGTATGTTTCTGCGAAAAAGGATCATCAGGAACCGCCAAAGGAGTTTAGGACTTCTGTTAAGTTTGCTAGGAACTCTGAACTTGGGATGTCCAATGTCTTAACGCCAATTTATTTGGTCGAATCTTAG

mRNA sequence

ATGAACTTACTACTTTGCTTGGAGGCTGCATTCCTTGCACGCTTAGTTGGATCTGATGTTGTCAGTGCATCAGCTCATTTTTCCTTGAAAAGCATGTCTCAGAAATCTCCCAGTTTAGATCTGGCTACAAGACACTGCTTTATTTTAGAAGATCCACTAGATGACAAGGCACAAGCTAATTCAGAGAGGGTTGTCAATGTGGAAGCTCAGCAAAATGTCAATGAACAGTGTGAAAAACAGAGGAAAGACAATTCTACTTCAGTTTTAGATGATAGTGCCTTATCGACTACTAACAGTATTTACAAAAATGGAGAATCTGTGACAGAGGAAACTACAATGGAGAATAGAAATTCTGCAGATGCTACTAAAGAACACGATCCAATGGTTAATCATGGTTCAGATGTAACTAATAAATTGAAAGAACTGACAGAACCAGAAGTGCCCAAGGATGATAGAACAAGCATTGTTAAGGAAACTGAAAATATGGAATCAAAATTGACAACAAATACAGTTCAAAAATTGGGAGAAGAAACTTCTGTTGAAAAGCCATCACAATCTACGTTGTTATCAAAGGATATACATATGTCAGATCTACGGAATGCTGAAAAAACTGAGATTCAGAAACAAGTTCCATCTCCTTCTGTCAATACTTCAAAAATAGATGATGTGCCAAATCCTTTACCTTCCGTGAATGAACTTCAGCCACTGGTTGCTGCCAATTCAGTGAAAGTAGCCTCAAGTGATGTAGCTATGGTATCTGATCCTCGAGATAAGAATGAACCTGCACAAACTGAAACATCTAAATCTGTGGTTGACCAGGGAGCAAGCAAGGTCTCTGATTCTTTGCCCACAGAAGAGAATGCACCTCCACAGCCAGTTAAACCAAATCCAGTTATTGATAAAGGAACAGGAACTTTATCATGCACTGTGATGTATGTTTCTGCGAAAAAGGATCATCAGGAACCGCCAAAGGAGTTTAGGACTTCTGTTAAGTTTGCTAGGAACTCTGAACTTGGGATGTCCAATGTCTTAACGCCAATTTATTTGGTCGAATCTTAG

Coding sequence (CDS)

ATGAACTTACTACTTTGCTTGGAGGCTGCATTCCTTGCACGCTTAGTTGGATCTGATGTTGTCAGTGCATCAGCTCATTTTTCCTTGAAAAGCATGTCTCAGAAATCTCCCAGTTTAGATCTGGCTACAAGACACTGCTTTATTTTAGAAGATCCACTAGATGACAAGGCACAAGCTAATTCAGAGAGGGTTGTCAATGTGGAAGCTCAGCAAAATGTCAATGAACAGTGTGAAAAACAGAGGAAAGACAATTCTACTTCAGTTTTAGATGATAGTGCCTTATCGACTACTAACAGTATTTACAAAAATGGAGAATCTGTGACAGAGGAAACTACAATGGAGAATAGAAATTCTGCAGATGCTACTAAAGAACACGATCCAATGGTTAATCATGGTTCAGATGTAACTAATAAATTGAAAGAACTGACAGAACCAGAAGTGCCCAAGGATGATAGAACAAGCATTGTTAAGGAAACTGAAAATATGGAATCAAAATTGACAACAAATACAGTTCAAAAATTGGGAGAAGAAACTTCTGTTGAAAAGCCATCACAATCTACGTTGTTATCAAAGGATATACATATGTCAGATCTACGGAATGCTGAAAAAACTGAGATTCAGAAACAAGTTCCATCTCCTTCTGTCAATACTTCAAAAATAGATGATGTGCCAAATCCTTTACCTTCCGTGAATGAACTTCAGCCACTGGTTGCTGCCAATTCAGTGAAAGTAGCCTCAAGTGATGTAGCTATGGTATCTGATCCTCGAGATAAGAATGAACCTGCACAAACTGAAACATCTAAATCTGTGGTTGACCAGGGAGCAAGCAAGGTCTCTGATTCTTTGCCCACAGAAGAGAATGCACCTCCACAGCCAGTTAAACCAAATCCAGTTATTGATAAAGGAACAGGAACTTTATCATGCACTGTGATGTATGTTTCTGCGAAAAAGGATCATCAGGAACCGCCAAAGGAGTTTAGGACTTCTGTTAAGTTTGCTAGGAACTCTGAACTTGGGATGTCCAATGTCTTAACGCCAATTTATTTGGTCGAATCTTAG

Homology

[Close]

BLAST of CmoCh11G011310 vs. Swiss-Prot
Match: SWI3D_ARATH (SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1 SV=3)

HSP 1 Score: 55.1 bits (131), Expect = 1.8e-06
Identity = 61/207 (29.47%), Postives = 99/207 (47.83%), Query Frame = 1


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE 68
           AAFL RL GSDV +ASA  S+KS+   S  L LATRHC+ILEDP D+K      +  + +
Sbjct: 551 AAFLVRLAGSDVATASARASIKSLHSNSGML-LATRHCYILEDPPDNKKDPTKSKSCSAD 610

Query: 69  AQQN------VNEQCEKQRKDNSTSV-LDDSALSTTNSIYKNGESVTEETTMENRNSADA 128
           A+ N       ++  EK +K    S+  DD  +  T++  +  +SV+EE    +R     
Sbjct: 611 AEGNDDNSHKDDQPEEKSKKAEEVSLNSDDREMPDTDTGKETQDSVSEEKQPGSRTENST 670

Query: 129 TKEHDPMVNHGSD--VTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETS 188
           TK         S    T+  ++  +   P  D+ S  +  E ++     ++  K   +++
Sbjct: 671 TKLDAVQEKRSSKPVTTDNSEKPVDIICPSQDKCSGKELQEPLKDGNKLSSENKDASQST 730

Query: 189 VEKPSQSTL---LSKDIHMSDLRNAEK 204
           V + +        S+D+ M D   +EK
Sbjct: 731 VSQSAADASQPEASRDVEMKDTLQSEK 756

[Close]

BLAST of CmoCh11G011310 vs. TrEMBL
Match: A0A0A0K5Y5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G267920 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 9.6e-95
Identity = 210/316 (66.46%), Postives = 250/316 (79.11%), Query Frame = 1


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDD-KAQANSERVVNV 68
           AAFLARLVGSDV SASA FSLKS SQKSPSL+LATRHCFILEDP DD KAQ N E V NV
Sbjct: 540 AAFLARLVGSDVASASARFSLKSTSQKSPSLELATRHCFILEDPPDDKKAQDNLESVDNV 599

Query: 69  EAQQNVNEQCEKQRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSADATKEHDP 128
           EAQ+N  EQ  KQ +DNSTS+LDD ALST NS  K+GESVT+ETT EN NS+DA +EHDP
Sbjct: 600 EAQKNDKEQSAKQSEDNSTSILDDRALSTNNSNNKSGESVTKETT-ENGNSSDAIREHDP 659

Query: 129 MVNHGSDVTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETSVEKPSQST 188
           + NHGSD ++ LKEL E E+ KD++T IVKE+EN+ESKLT+N V+  GE T+ EKP +ST
Sbjct: 660 ITNHGSDTSSNLKELGEKELLKDEKTGIVKESENLESKLTSNPVETSGEGTTGEKPLEST 719

Query: 189 LLSKDIHMSDLRNAEKTEIQKQVPSPSVNTSK-IDDVPNPLPSVNELQPLVAANSVKVAS 248
           + S D+HMSDL++AE++EIQKQVP  S   SK +DD    L S +ELQP+ +ANSVK AS
Sbjct: 720 MSSNDVHMSDLQHAERSEIQKQVPPHSAKISKELDDETKRLSSGDELQPISSANSVKEAS 779

Query: 249 SDVAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENAPPQPVKPNPVIDKGTGTL 308
           +DVAMVSD  DKNE  QTET KS+V++GA KVSDSLP+EEN   +PVKPN V+++  GT 
Sbjct: 780 NDVAMVSDSHDKNEAGQTETPKSLVNEGAIKVSDSLPSEENESSEPVKPNSVVERRAGTF 839

Query: 309 SCTVMYVS-AKKDHQE 322
           S T+MYVS  KKDHQE
Sbjct: 840 SNTLMYVSGVKKDHQE 854

[Close]

BLAST of CmoCh11G011310 vs. TrEMBL
Match: M5VJC1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000770mg PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.3e-22
Identity = 113/315 (35.87%), Postives = 171/315 (54.29%), Query Frame = 1


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILED-PLDDKAQANSERVV-- 68
           AAFLARLVG DV  ASAH SLKS+S  SP  +LA RHCF+LED P D+K QA  + VV  
Sbjct: 541 AAFLARLVGPDVAIASAHNSLKSISASSPGTELAARHCFLLEDPPSDNKEQAGPDSVVAE 600

Query: 69  --NVEAQQNVNEQCEKQRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSADATK 128
               + Q+++ ++ + Q++DN+TS L+D  LS        G+++ E+ + E +  + + +
Sbjct: 601 VLKDKVQEDIVDEDKSQKEDNATSGLEDKDLSN-----DKGDNILEKPSPEEK--SQSAE 660

Query: 129 EHDPMVNHGSDVTNKLKELTEPEVPKDDRTSIVKETEN--MESKLTTNTVQKLGEETSVE 188
           E D +V+H     + L +    E+PKD   + V + ++  +E++   ++ ++ GE  SV 
Sbjct: 661 EQDGIVSHEEVEADNLNKSDNLELPKDQSPTTVGKLDDSKLEAENPPSSEKESGEGISVG 720

Query: 189 KPSQSTLLSKDIHMSDLRNAEKTEIQKQVPSPSV-------NTSKIDDVPNPLPS-VNEL 248
           KPS+ T   KD+ M D   + K + Q+ V S SV         SK  DV N L S +NE 
Sbjct: 721 KPSEPTDTPKDVDMCDSLPSTKDKPQQPVTSNSVEEPPRSTEASKDLDVSNSLASQMNEP 780

Query: 249 QPLVAANSVK-----VASSDVAMVSD--PRDKNEPAQTETSKSVVDQGASKVSDSLPTEE 302
           Q  V A S +       S DV MVSD  P+++++  Q   S S+V+ GAS+   +    E
Sbjct: 781 QQPVTAKSEEPPRPTEESKDVDMVSDPQPQEQDDSQQPVASNSMVETGASEDQTNDGKSE 840

[Close]

BLAST of CmoCh11G011310 vs. TrEMBL
Match: A0A061E077_THECC (Chromatin remodeling complex subunit, putative isoform 1 OS=Theobroma cacao GN=TCM_006905 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.7e-22
Identity = 109/297 (36.70%), Postives = 165/297 (55.56%), Query Frame = 1


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE 68
           A F ARLVG  + +ASA  SLKS+S  SPS+ LA R+CF+LEDP DDK    SE VVN  
Sbjct: 548 AGFFARLVGPKIAAASAQSSLKSLSGSSPSIQLAARNCFLLEDPPDDKEPNGSESVVNGM 607

Query: 69  AQ---QNVNEQCEK-QRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSADA--- 128
           A    QNV    EK  ++D S+ VLD       NS+  +G+  TE +  E++ ++ +   
Sbjct: 608 ANRDAQNVENLEEKGPKEDKSSPVLDQQ-----NSLSNHGDQNTEVSVPEDKVTSASPNE 667

Query: 129 ----TKEHDPMVNHGSDVTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKL-GE 188
                KE D +  +  D    L E +  +  KD + S++KE++N+ S+++ ++V++  G+
Sbjct: 668 LSTDKKEPDTLTTNEEDKKANLNESSVIDQSKDHQPSLMKESDNLASQVSLSSVEETGGK 727

Query: 189 ETSVEKPSQSTLLSKDIHMSDLRNAEKTE-----IQK---QVPSPSVNTSKIDDVP-NPL 248
           ETSVE+PSQ T   K++ M+D    EK E     + K   ++  P+     ++ VP +P 
Sbjct: 728 ETSVEEPSQPTEAVKEVDMTDSVPLEKNEPCDAAVSKPVGELSEPAEALQNVETVPGSPS 787

Query: 249 PSVNELQPLVAANSV------KVASSDVAMVSD--PRDKNEPAQTETSKSVVDQGAS 277
              NE QP V + SV         S+DV MVSD  P ++ EP Q+ TS ++ + GA+
Sbjct: 788 RGKNE-QPPVKSTSVGEPTQPTEVSNDVEMVSDSQPLERIEPHQSVTSNNLNENGAT 838

[Close]

BLAST of CmoCh11G011310 vs. TrEMBL
Match: A0A067K099_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18808 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.5e-19
Identity = 115/358 (32.12%), Postives = 170/358 (47.49%), Query Frame = 1


Query: 4   LLCLEAAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDK---AQAN 63
           +L  EAAFLARLVGSDV +AS+  SLKS+S  SP + LA RHCF+LEDP D++   A+ +
Sbjct: 611 ILSNEAAFLARLVGSDVSTASSGCSLKSLSSDSPGMQLAARHCFLLEDPPDNQQEPAEPD 670

Query: 64  SERVVNVEAQQNVNEQCEKQRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSAD 123
                  +  QN N++ + Q+ +N+    D   LS  NS  K  +S  EE    N  S  
Sbjct: 671 CATETANQDAQNFNQEGQAQKGNNA----DGGELSIDNSNRKIEDSAAEEKQPLNSPSDK 730

Query: 124 ATKEHDPMVNHGSDVTN-----KLKELTEPEVPKDDRTSIVKETENMESKL-TTNTVQKL 183
           +T+  +     G+ V++     KLKE ++  + K+ + +++KE+  M S      +  K 
Sbjct: 731 STENVNTANEAGTAVSHEVEHGKLKESSDSVLQKEPQINVLKESNEMPSNSECPPSSTKE 790

Query: 184 GEETSVEKPSQSTLLSKDIHMSDLRNAEKTEIQKQVPSPSVNTSKIDDVPNPLPSVNELQ 243
            E TS   PSQ   ++KD+ M                   V+ S   +   P PSV  + 
Sbjct: 791 TEGTSTTVPSQPKEVNKDVEM-------------------VSNSTPAENDEPCPSVASV- 850

Query: 244 PLVAANSVKVASSDVAMVSD--PRDKNEPAQTETSKSVVDQGAS-------KVSDSLPTE 303
           P+   +     S DV M+SD  P +KNE  Q   S SV D   S        +  S+ +E
Sbjct: 851 PVEEESQTAETSKDVDMISDSLPAEKNEQQQPVKSNSVRDSTPSIEAPKDVDMLSSMTSE 910

Query: 304 ENAPPQPVKPNPVIDKGTGTLSCTVMYVSAKKDHQEPPKEFRTSVKFARNSELGMSNV 344
              PPQPV PN V++ G           + K + Q+  K  R S  F +N +  +  V
Sbjct: 911 LKEPPQPVAPNSVVENG-----------ATKAEDQKGSK--RESADFKQNDDNSIDKV 931

[Close]

BLAST of CmoCh11G011310 vs. TrEMBL
Match: A0A0D2RKZ3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G242600 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.6e-17
Identity = 92/288 (31.94%), Postives = 155/288 (53.82%), Query Frame = 1


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDD-KAQANSERVV-- 68
           A F ARL G  + +ASA  SLK++S  SP++ LA R+CF+LEDP DD K Q  SE VV  
Sbjct: 557 AGFFARLAGPKIGAASAQASLKALSGSSPNIQLAARNCFLLEDPPDDKKEQTGSESVVND 616

Query: 69  --NVEAQQNVNEQCEKQRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSADATK 128
             N +AQ   N + +  ++D ST VLD  + S+ ++      S+ EE       +  +T 
Sbjct: 617 VGNQDAQNVENSENKSLKEDKSTPVLDQKSSSSNHADQNAETSLPEEKVTSASPNCLSTD 676

Query: 129 EHDPMVNHGSDVTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKL-GEETSVEK 188
           + +P    G+  T+  KE  +    KD    +++ ++N+ S++  ++ ++  G+ETS ++
Sbjct: 677 KKEP----GTSATS--KEAKKANQSKDHEPGVMRGSDNLASQVPPSSAEETGGKETSAQE 736

Query: 189 PSQSTLLSKDIHMSDLRNAEKTEIQ--------KQVPSPSVNTSKIDDVP-NPLPSVNEL 248
            SQ T + K++ MS+    EK E           ++  P+     ++ V  +P  + NE 
Sbjct: 737 SSQRTEVVKEVEMSESVPLEKNEPSDAAASEPVAELSEPTEALKNVETVSGSPSGAKNEQ 796

Query: 249 QPLVAANSVKV-----ASSDVAMVSD--PRDKNEPAQTETSKSVVDQG 275
           QP+ +++  ++     AS+D+ MVSD  P +++EP Q  TS SV + G
Sbjct: 797 QPVKSSSGGEISQPTKASNDIEMVSDSQPSERSEPQQPVTSNSVNENG 838

[Close]

BLAST of CmoCh11G011310 vs. TAIR10
Match: AT4G34430.4 (AT4G34430.4 DNA-binding family protein)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-07
Identity = 61/207 (29.47%), Postives = 99/207 (47.83%), Query Frame = 1


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE 68
           AAFL RL GSDV +ASA  S+KS+   S  L LATRHC+ILEDP D+K      +  + +
Sbjct: 551 AAFLVRLAGSDVATASARASIKSLHSNSGML-LATRHCYILEDPPDNKKDPTKSKSCSAD 610

Query: 69  AQQN------VNEQCEKQRKDNSTSV-LDDSALSTTNSIYKNGESVTEETTMENRNSADA 128
           A+ N       ++  EK +K    S+  DD  +  T++  +  +SV+EE    +R     
Sbjct: 611 AEGNDDNSHKDDQPEEKSKKAEEVSLNSDDREMPDTDTGKETQDSVSEEKQPGSRTENST 670

Query: 129 TKEHDPMVNHGSD--VTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETS 188
           TK         S    T+  ++  +   P  D+ S  +  E ++     ++  K   +++
Sbjct: 671 TKLDAVQEKRSSKPVTTDNSEKPVDIICPSQDKCSGKELQEPLKDGNKLSSENKDASQST 730

Query: 189 VEKPSQSTL---LSKDIHMSDLRNAEK 204
           V + +        S+D+ M D   +EK
Sbjct: 731 VSQSAADASQPEASRDVEMKDTLQSEK 756

[Close]

BLAST of CmoCh11G011310 vs. NCBI nr
Match: gi|700189111|gb|KGN44344.1| (hypothetical protein Csa_7G267920 [Cucumis sativus])

HSP 1 Score: 355.1 bits (910), Expect = 1.4e-94
Identity = 210/316 (66.46%), Postives = 250/316 (79.11%), Query Frame = 1


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDD-KAQANSERVVNV 68
           AAFLARLVGSDV SASA FSLKS SQKSPSL+LATRHCFILEDP DD KAQ N E V NV
Sbjct: 540 AAFLARLVGSDVASASARFSLKSTSQKSPSLELATRHCFILEDPPDDKKAQDNLESVDNV 599

Query: 69  EAQQNVNEQCEKQRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSADATKEHDP 128
           EAQ+N  EQ  KQ +DNSTS+LDD ALST NS  K+GESVT+ETT EN NS+DA +EHDP
Sbjct: 600 EAQKNDKEQSAKQSEDNSTSILDDRALSTNNSNNKSGESVTKETT-ENGNSSDAIREHDP 659

Query: 129 MVNHGSDVTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETSVEKPSQST 188
           + NHGSD ++ LKEL E E+ KD++T IVKE+EN+ESKLT+N V+  GE T+ EKP +ST
Sbjct: 660 ITNHGSDTSSNLKELGEKELLKDEKTGIVKESENLESKLTSNPVETSGEGTTGEKPLEST 719

Query: 189 LLSKDIHMSDLRNAEKTEIQKQVPSPSVNTSK-IDDVPNPLPSVNELQPLVAANSVKVAS 248
           + S D+HMSDL++AE++EIQKQVP  S   SK +DD    L S +ELQP+ +ANSVK AS
Sbjct: 720 MSSNDVHMSDLQHAERSEIQKQVPPHSAKISKELDDETKRLSSGDELQPISSANSVKEAS 779

Query: 249 SDVAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENAPPQPVKPNPVIDKGTGTL 308
           +DVAMVSD  DKNE  QTET KS+V++GA KVSDSLP+EEN   +PVKPN V+++  GT 
Sbjct: 780 NDVAMVSDSHDKNEAGQTETPKSLVNEGAIKVSDSLPSEENESSEPVKPNSVVERRAGTF 839

Query: 309 SCTVMYVS-AKKDHQE 322
           S T+MYVS  KKDHQE
Sbjct: 840 SNTLMYVSGVKKDHQE 854

[Close]

BLAST of CmoCh11G011310 vs. NCBI nr
Match: gi|659092382|ref|XP_008447039.1| (PREDICTED: SWI/SNF complex subunit SWI3D [Cucumis melo])

HSP 1 Score: 338.6 bits (867), Expect = 1.3e-89
Identity = 199/295 (67.46%), Postives = 239/295 (81.02%), Query Frame = 1


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDD-KAQANSERVVNV 68
           AAFLARLVGSDV SASA FSLKS+SQKSPSL+LATRHCFILEDP DD KAQ N E V NV
Sbjct: 542 AAFLARLVGSDVASASARFSLKSISQKSPSLELATRHCFILEDPPDDKKAQDNLESVDNV 601

Query: 69  EAQQNVNEQCEKQRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSADATKEHDP 128
           EAQ+N  E+  KQ +DNSTSVLDD ALST NS  K+GESVT+ETT EN NS+DA +EH+P
Sbjct: 602 EAQKNDKEESAKQSEDNSTSVLDDRALSTNNSNNKSGESVTKETT-ENGNSSDAIREHNP 661

Query: 129 MVNHGSDVTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETSVEKPSQST 188
           ++NHGSD ++ LKEL E E+ KD++T IVKE+EN+ESKLT+N V+  GE T+VEKP +ST
Sbjct: 662 IINHGSDTSSNLKELGEKELLKDEKTGIVKESENLESKLTSNPVETSGEGTTVEKPLEST 721

Query: 189 LLSKDIHMSDLRNAEKTEIQKQVPSPSVNTSK-IDDVPNPLPSVNELQPLVAANSVKVAS 248
           L S D+HMSDL++AEK+EIQKQVP  S  TSK +DD    L S +E QP+ +ANSVK AS
Sbjct: 722 LSSNDVHMSDLQHAEKSEIQKQVPPHSAKTSKEVDDETKRLSSGDEPQPISSANSVKEAS 781

Query: 249 SDVAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENAPPQPVKPNPVIDK 302
           +DVAMVSD  DKNE  QTETSKS+V+QG +KVSDSLP+EENA  +PVKPN  +++
Sbjct: 782 NDVAMVSDSHDKNEARQTETSKSLVNQGPNKVSDSLPSEENASTEPVKPNSAVER 835

[Close]

BLAST of CmoCh11G011310 vs. NCBI nr
Match: gi|449465389|ref|XP_004150410.1| (PREDICTED: SWI/SNF complex subunit SWI3D [Cucumis sativus])

HSP 1 Score: 332.4 bits (851), Expect = 9.5e-88
Identity = 196/295 (66.44%), Postives = 235/295 (79.66%), Query Frame = 1


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDD-KAQANSERVVNV 68
           AAFLARLVGSDV SASA FSLKS SQKSPSL+LATRHCFILEDP DD KAQ N E V NV
Sbjct: 540 AAFLARLVGSDVASASARFSLKSTSQKSPSLELATRHCFILEDPPDDKKAQDNLESVDNV 599

Query: 69  EAQQNVNEQCEKQRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSADATKEHDP 128
           EAQ+N  EQ  KQ +DNSTS+LDD ALST NS  K+GESVT+ETT EN NS+DA +EHDP
Sbjct: 600 EAQKNDKEQSAKQSEDNSTSILDDRALSTNNSNNKSGESVTKETT-ENGNSSDAIREHDP 659

Query: 129 MVNHGSDVTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETSVEKPSQST 188
           + NHGSD ++ LKEL E E+ KD++T IVKE+EN+ESKLT+N V+  GE T+ EKP +ST
Sbjct: 660 ITNHGSDTSSNLKELGEKELLKDEKTGIVKESENLESKLTSNPVETSGEGTTGEKPLEST 719

Query: 189 LLSKDIHMSDLRNAEKTEIQKQVPSPSVNTSK-IDDVPNPLPSVNELQPLVAANSVKVAS 248
           + S D+HMSDL++AE++EIQKQVP  S   SK +DD    L S +ELQP+ +ANSVK AS
Sbjct: 720 MSSNDVHMSDLQHAERSEIQKQVPPHSAKISKELDDETKRLSSGDELQPISSANSVKEAS 779

Query: 249 SDVAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENAPPQPVKPNPVIDK 302
           +DVAMVSD  DKNE  QTET KS+V++GA KVSDSLP+EEN   +PVKPN V+++
Sbjct: 780 NDVAMVSDSHDKNEAGQTETPKSLVNEGAIKVSDSLPSEENESSEPVKPNSVVER 833

[Close]

BLAST of CmoCh11G011310 vs. NCBI nr
Match: gi|694397935|ref|XP_009374175.1| (PREDICTED: SWI/SNF complex subunit SWI3D [Pyrus x bretschneideri])

HSP 1 Score: 124.8 bits (312), Expect = 3.0e-25
Identity = 113/286 (39.51%), Postives = 151/286 (52.80%), Query Frame = 1


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDD-KAQANSERV-VN 68
           AAFLARLVG D   ASAH SLKS+S  SP  +LA RHCFILEDP +D K QA  + V   
Sbjct: 542 AAFLARLVGPDAAIASAHNSLKSISASSPGTELAARHCFILEDPPNDSKEQAGPDSVSAE 601

Query: 69  VEAQQNVNEQCEKQRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSADATKEHD 128
            E Q++   + + Q+ DNSTS L+D  LS  NS  K  +  TEE        + + KE D
Sbjct: 602 GETQKDKVHEDKSQKADNSTSGLEDKDLSIDNSDKKLEKPSTEE-------KSQSAKEQD 661

Query: 129 PMVNHGSDVTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETSVEKPSQS 188
            +V+H     + LK+    E+PKD+  +   E+ + + +    T  +        KPS+ 
Sbjct: 662 DIVSHEEVGNDNLKKSDNLELPKDESPTTAGESTDSKVETGHQTSSEKESGEGAGKPSEP 721

Query: 189 TLLSKDIHMSDLRNAEKTEIQKQVPSPSV-------NTSKIDDVPNPLPS-VNELQPLVA 248
           T   +D+ MSD   + K E Q+ V S SV         SK  DV N L + +NE QPL  
Sbjct: 722 TEAVRDVDMSDAVPSTKNETQQPVTSNSVEEPLQSEEASKDVDVSNSLATEINEPQPLFT 781

Query: 249 ANSVK-----VASSDVAMVSDPR--DKNEPAQTETSKSVVDQGASK 278
           A S +     V   DV MV D +   K+EP Q   S SVV++GAS+
Sbjct: 782 AKSQEPPERTVVPKDVDMVCDSQTPQKDEPQQPVASNSVVEKGASE 820

[Close]

BLAST of CmoCh11G011310 vs. NCBI nr
Match: gi|645262687|ref|XP_008236874.1| (PREDICTED: SWI/SNF complex subunit SWI3D [Prunus mume])

HSP 1 Score: 119.0 bits (297), Expect = 1.7e-23
Identity = 119/318 (37.42%), Postives = 173/318 (54.40%), Query Frame = 1


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILED-PLDDKAQANSE----R 68
           AAFLARLVG DV  ASAH SLKS+S  SP  +LA RHCF+LED P D+K QA  +     
Sbjct: 563 AAFLARLVGPDVAIASAHNSLKSISASSPGTELAARHCFLLEDPPSDNKEQAGPDSVAAE 622

Query: 69  VVNVEAQQNVNEQCEKQRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSADATK 128
           V+  + Q+++ ++ + Q++DN+TS L+D  LS        G+   E+ + E +  + + +
Sbjct: 623 VLKDKVQEDIVDEDKSQKEDNATSGLEDKDLSN-----DKGDKKLEKPSPEEK--SQSAE 682

Query: 129 EHDPMVNH---GSDVTNKLKELTEPEVPKDDR-TSIVK-ETENMESKLTTNTVQKLGEET 188
           E D +V+H   G+D  NK   L   E+PKD   TS+ K +   +E++   ++ ++ GE  
Sbjct: 683 EQDGIVSHEEVGADNLNKSDNL---ELPKDQSPTSVGKLDDSKLEAENPPSSEKESGEGI 742

Query: 189 SVEKPSQSTLLSKDIHMSDLRNAEKTEIQKQVPSPSV-------NTSKIDDVPN-PLPSV 248
           SV KPS+ T   KD+ M D   + K E Q+ V S SV         SK  DV N P+  +
Sbjct: 743 SVGKPSEPTDTPKDVDMCDSLPSTKDEPQQPVTSNSVEEPPRSTEASKDLDVSNSPVSQI 802

Query: 249 NELQPLVAANSVK-----VASSDVAMVSDPR--DKNEPAQTETSKSVVDQGASKVSDSLP 302
           NE Q  V A SV+       S DV MVSDP+  ++++  Q   S S+V+ GAS+   +  
Sbjct: 803 NEPQQPVTAKSVEPPQPTEESKDVDMVSDPQPPEQDDSQQPVASNSMVETGASEDQTNDG 862

The following BLAST results are available for this feature:

BLAST of CmoCh11G011310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SWI3D_ARATH	1.8e-06	29.47	SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1 SV=3	[more]

BLAST of CmoCh11G011310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5Y5_CUCSA	9.6e-95	66.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G267920 PE=4 SV=1	[more]
M5VJC1_PRUPE	1.3e-22	35.87	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000770mg PE=4 SV=1	[more]
A0A061E077_THECC	1.7e-22	36.70	Chromatin remodeling complex subunit, putative isoform 1 OS=Theobroma cacao GN=T...	[more]
A0A067K099_JATCU	6.5e-19	32.12	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18808 PE=4 SV=1	[more]
A0A0D2RKZ3_GOSRA	1.6e-17	31.94	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G242600 PE=4 SV=1	[more]

BLAST of CmoCh11G011310 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34430.4	1.0e-07	29.47	DNA-binding family protein	[more]

BLAST of CmoCh11G011310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189111\|gb\|KGN44344.1\|	1.4e-94	66.46	hypothetical protein Csa_7G267920 [Cucumis sativus]	[more]
gi\|659092382\|ref\|XP_008447039.1\|	1.3e-89	67.46	PREDICTED: SWI/SNF complex subunit SWI3D [Cucumis melo]	[more]
gi\|449465389\|ref\|XP_004150410.1\|	9.5e-88	66.44	PREDICTED: SWI/SNF complex subunit SWI3D [Cucumis sativus]	[more]
gi\|694397935\|ref\|XP_009374175.1\|	3.0e-25	39.51	PREDICTED: SWI/SNF complex subunit SWI3D [Pyrus x bretschneideri]	[more]
gi\|645262687\|ref\|XP_008236874.1\|	1.7e-23	37.42	PREDICTED: SWI/SNF complex subunit SWI3D [Prunus mume]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G011310.1	CmoCh11G011310.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G011310	Cla015934	Watermelon (97103) v1	cmowmB111
CmoCh11G011310	Csa7G267920	Cucumber (Chinese Long) v2	cmocuB141
CmoCh11G011310	CSPI07G11540	Wild cucumber (PI 183967)	cmocpiB140
CmoCh11G011310	CsaV3_7G023480	Cucumber (Chinese Long) v3	cmocucB0163
CmoCh11G011310	CsGy7G010790	Cucumber (Gy14) v2	cgybcmoB884

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G011310	Watermelon (97103) v2	cmowmbB089
CmoCh11G011310	Wax gourd	cmowgoB0121
CmoCh11G011310	Cucurbita moschata (Rifu)	cmocmoB111
CmoCh11G011310	Cucurbita moschata (Rifu)	cmocmoB120
CmoCh11G011310	Cucumber (Gy14) v1	cgycmoB0673
CmoCh11G011310	Cucurbita maxima (Rimu)	cmacmoB112
CmoCh11G011310	Cucurbita maxima (Rimu)	cmacmoB495
CmoCh11G011310	Melon (DHL92) v3.5.1	cmomeB086
CmoCh11G011310	Watermelon (Charleston Gray)	cmowcgB089
CmoCh11G011310	Cucurbita pepo (Zucchini)	cmocpeB096
CmoCh11G011310	Cucurbita pepo (Zucchini)	cmocpeB127
CmoCh11G011310	Bottle gourd (USVL1VR-Ls)	cmolsiB090
CmoCh11G011310	Melon (DHL92) v3.6.1	cmomedB092