CmoCh11G010880 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G010880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr11 : 6083881 .. 6084520 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCCCAAAGAAAGCTACTCCCACTTCTTTTATCTCTGCTCAACCAGTGCTACTTTGCTTAGCAGTCCCGGTAACTTAACAACAACTACAATCCAATAGAACAAAACCAATGCCATAATTACAACAAAGCCTATTGTCCTTCATTTTGTCTAATTGAAACACGTTTCCAAACTTGGTAACTGTCATAATTGCGCTCTAGCGGTAAAGGAAAGCAATAAAGTGATACGACACAAGGGTTTCGGCATGGGGCCATAGGCAACACGCCTTGGATAAGCATGACTGTGACACTAAGTACTGACCTCTTTCTTAGTACATTTTGTTCATCAATAAAATTGTTTCGTACGGAAAGCCCTGAAACAATGCTGTCACTCCTCTGTTAAAGTATATAGTTTATAGTTTAGAGCTTATGCGTTTCTGGAATTAATTTGATATCAAATGTGACACAGCTCTAAACGAAGCATTAACTGCGGAGGTTCAGCGATTGAAGCTCGCTACGACTGAGATAAACTCGCAATCTCATCCCTCAAACAGGGTAATGGCTCAACCTTCAATGAATCACCATGGACTCCAGCTTCAGCAGCAGCATCATGTGCAGCAGAATGGCAATGGAACCACAAAACCAGAGTCCAACCAATAA

mRNA sequence

ATGGACCCCAAAGAAAGCTACTCCCACTTCTTTTATCTCTGCTCAACCAGTGCTACTTTGCTTAGCAGTCCCGCTCTAAACGAAGCATTAACTGCGGAGGTTCAGCGATTGAAGCTCGCTACGACTGAGATAAACTCGCAATCTCATCCCTCAAACAGGGTAATGGCTCAACCTTCAATGAATCACCATGGACTCCAGCTTCAGCAGCAGCATCATGTGCAGCAGAATGGCAATGGAACCACAAAACCAGAGTCCAACCAATAA

Coding sequence (CDS)

ATGGACCCCAAAGAAAGCTACTCCCACTTCTTTTATCTCTGCTCAACCAGTGCTACTTTGCTTAGCAGTCCCGCTCTAAACGAAGCATTAACTGCGGAGGTTCAGCGATTGAAGCTCGCTACGACTGAGATAAACTCGCAATCTCATCCCTCAAACAGGGTAATGGCTCAACCTTCAATGAATCACCATGGACTCCAGCTTCAGCAGCAGCATCATGTGCAGCAGAATGGCAATGGAACCACAAAACCAGAGTCCAACCAATAA

Homology

[Close]

BLAST of CmoCh11G010880 vs. TrEMBL
Match: A0A0A0K0G6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G007880 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.2e-18
Identity = 54/66 (81.82%), Postives = 58/66 (87.88%), Query Frame = 1


Query: 25  ALNEALTAEVQRLKLATTEINSQSHPSNRVMAQPSMNHHGLQL---QQQHHVQQNGNGTT 84
           ALNEALTAEVQRLKLATT+IN+QSHPSN VMAQ SMNHHGLQL   QQQ H+QQNG+  T
Sbjct: 498 ALNEALTAEVQRLKLATTDINAQSHPSNGVMAQSSMNHHGLQLQQHQQQQHMQQNGSAAT 557

Query: 85  KPESNQ 88
           KPESNQ
Sbjct: 558 KPESNQ 563

[Close]

BLAST of CmoCh11G010880 vs. TrEMBL
Match: A0A0A0K5S3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G007890 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.6e-14
Identity = 49/68 (72.06%), Postives = 56/68 (82.35%), Query Frame = 1


Query: 25  ALNEALTAEVQRLKLATTEINSQSHPSNRVMAQPSMNHHGLQLQQQH-----HVQQNGNG 84
           ALNEALTAEVQRLKLATTE+N+QSH  N VM+Q ++NHH LQLQ QH     H+QQNG+ 
Sbjct: 500 ALNEALTAEVQRLKLATTELNAQSH-QNGVMSQAAINHHSLQLQLQHHQQQQHMQQNGSA 559

Query: 85  TTKPESNQ 88
           TTKPESNQ
Sbjct: 560 TTKPESNQ 566

[Close]

BLAST of CmoCh11G010880 vs. TrEMBL
Match: A0A059ANP7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01335 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-07
Identity = 41/73 (56.16%), Postives = 48/73 (65.75%), Query Frame = 1


Query: 25  ALNEALTAEVQRLKLATTEINSQSHPSNRVMAQPSMNHHGLQL----------QQQHHVQ 84
           ALNEALTAEVQRLKLAT E+NS+SHPS  +++Q  ++    QL          QQ    Q
Sbjct: 505 ALNEALTAEVQRLKLATAELNSESHPSKCMVSQLPVSSQMFQLHQMQQQQQSQQQTQSQQ 564

Query: 85  QNGNGTTKPESNQ 88
           QNGN TTK ESNQ
Sbjct: 565 QNGNTTTKSESNQ 577

[Close]

BLAST of CmoCh11G010880 vs. NCBI nr
Match: gi|659094381|ref|XP_008448029.1| (PREDICTED: probable transcription factor PosF21 [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 2.6e-18
Identity = 55/67 (82.09%), Postives = 59/67 (88.06%), Query Frame = 1


Query: 25  ALNEALTAEVQRLKLATTEINSQSHPSNRVMAQPSMNHHGLQLQQQH----HVQQNGNGT 84
           ALNEALTAEVQRLKLATT+IN+QSHPSN VMAQ SMN HGLQLQQQH    H+QQNG+ T
Sbjct: 498 ALNEALTAEVQRLKLATTDINAQSHPSNGVMAQSSMNRHGLQLQQQHQQQQHMQQNGSAT 557

Query: 85  TKPESNQ 88
           TKPESNQ
Sbjct: 558 TKPESNQ 564

[Close]

BLAST of CmoCh11G010880 vs. NCBI nr
Match: gi|778722794|ref|XP_011658570.1| (PREDICTED: transcription factor VIP1 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 7.5e-18
Identity = 54/66 (81.82%), Postives = 58/66 (87.88%), Query Frame = 1


Query: 25  ALNEALTAEVQRLKLATTEINSQSHPSNRVMAQPSMNHHGLQL---QQQHHVQQNGNGTT 84
           ALNEALTAEVQRLKLATT+IN+QSHPSN VMAQ SMNHHGLQL   QQQ H+QQNG+  T
Sbjct: 498 ALNEALTAEVQRLKLATTDINAQSHPSNGVMAQSSMNHHGLQLQQHQQQQHMQQNGSAAT 557

Query: 85  KPESNQ 88
           KPESNQ
Sbjct: 558 KPESNQ 563

[Close]

BLAST of CmoCh11G010880 vs. NCBI nr
Match: gi|659094377|ref|XP_008448027.1| (PREDICTED: dentin sialophosphoprotein [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-17
Identity = 52/68 (76.47%), Postives = 59/68 (86.76%), Query Frame = 1


Query: 25  ALNEALTAEVQRLKLATTEINSQSHPSNRVMAQPSMNHHGLQLQQQHH-----VQQNGNG 84
           ALNEALTAEVQRLKLATTE+N+QSHPSN VM+QP++NHH LQLQ QHH     +QQNG+ 
Sbjct: 501 ALNEALTAEVQRLKLATTELNAQSHPSNGVMSQPAINHHSLQLQLQHHQQQQQMQQNGST 560

Query: 85  TTKPESNQ 88
           TTKPESNQ
Sbjct: 561 TTKPESNQ 568

[Close]

BLAST of CmoCh11G010880 vs. NCBI nr
Match: gi|778722790|ref|XP_011658569.1| (PREDICTED: uncharacterized protein LOC101216189 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 6.5e-14
Identity = 49/68 (72.06%), Postives = 56/68 (82.35%), Query Frame = 1


Query: 25  ALNEALTAEVQRLKLATTEINSQSHPSNRVMAQPSMNHHGLQLQQQH-----HVQQNGNG 84
           ALNEALTAEVQRLKLATTE+N+QSH  N VM+Q ++NHH LQLQ QH     H+QQNG+ 
Sbjct: 500 ALNEALTAEVQRLKLATTELNAQSH-QNGVMSQAAINHHSLQLQLQHHQQQQHMQQNGSA 559

Query: 85  TTKPESNQ 88
           TTKPESNQ
Sbjct: 560 TTKPESNQ 566

[Close]

BLAST of CmoCh11G010880 vs. NCBI nr
Match: gi|702463448|ref|XP_010028661.1| (PREDICTED: uncharacterized protein LOC104418889 [Eucalyptus grandis])

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 41/73 (56.16%), Postives = 48/73 (65.75%), Query Frame = 1


Query: 25  ALNEALTAEVQRLKLATTEINSQSHPSNRVMAQPSMNHHGLQL----------QQQHHVQ 84
           ALNEALTAEVQRLKLAT E+NS+SHPS  +++Q  ++    QL          QQ    Q
Sbjct: 505 ALNEALTAEVQRLKLATAELNSESHPSKCMVSQLPVSSQMFQLHQMQQQQQSQQQTQSQQ 564

Query: 85  QNGNGTTKPESNQ 88
           QNGN TTK ESNQ
Sbjct: 565 QNGNTTTKSESNQ 577

The following BLAST results are available for this feature:

BLAST of CmoCh11G010880 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh11G010880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K0G6_CUCSA	5.2e-18	81.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G007880 PE=4 SV=1	[more]
A0A0A0K5S3_CUCSA	4.6e-14	72.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G007890 PE=4 SV=1	[more]
A0A059ANP7_EUCGR	2.4e-07	56.16	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01335 PE=4 SV=1	[more]

BLAST of CmoCh11G010880 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh11G010880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094381\|ref\|XP_008448029.1\|	2.6e-18	82.09	PREDICTED: probable transcription factor PosF21 [Cucumis melo]	[more]
gi\|778722794\|ref\|XP_011658570.1\|	7.5e-18	81.82	PREDICTED: transcription factor VIP1 [Cucumis sativus]	[more]
gi\|659094377\|ref\|XP_008448027.1\|	2.8e-17	76.47	PREDICTED: dentin sialophosphoprotein [Cucumis melo]	[more]
gi\|778722790\|ref\|XP_011658569.1\|	6.5e-14	72.06	PREDICTED: uncharacterized protein LOC101216189 [Cucumis sativus]	[more]
gi\|702463448\|ref\|XP_010028661.1\|	3.5e-07	56.16	PREDICTED: uncharacterized protein LOC104418889 [Eucalyptus grandis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G010880.1	CmoCh11G010880.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G010880	Wild cucumber (PI 183967)	cmocpiB138
CmoCh11G010880	Cucumber (Chinese Long) v2	cmocuB139
CmoCh11G010880	Melon (DHL92) v3.5.1	cmomeB086
CmoCh11G010880	Watermelon (Charleston Gray)	cmowcgB089
CmoCh11G010880	Watermelon (97103) v1	cmowmB111
CmoCh11G010880	Cucurbita pepo (Zucchini)	cmocpeB096
CmoCh11G010880	Cucurbita pepo (Zucchini)	cmocpeB127
CmoCh11G010880	Bottle gourd (USVL1VR-Ls)	cmolsiB090
CmoCh11G010880	Cucumber (Gy14) v2	cgybcmoB159
CmoCh11G010880	Cucumber (Gy14) v2	cgybcmoB882
CmoCh11G010880	Melon (DHL92) v3.6.1	cmomedB092
CmoCh11G010880	Silver-seed gourd	carcmoB0297
CmoCh11G010880	Cucumber (Chinese Long) v3	cmocucB0161
CmoCh11G010880	Watermelon (97103) v2	cmowmbB089
CmoCh11G010880	Wax gourd	cmowgoB0114
CmoCh11G010880	Cucurbita moschata (Rifu)	cmocmoB111
CmoCh11G010880	Cucurbita maxima (Rimu)	cmacmoB112
CmoCh11G010880	Cucurbita maxima (Rimu)	cmacmoB495