CmoCh11G003290 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G003290
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cellular nucleic acid binding protein, putative
Location	Cmo_Chr11 : 1606782 .. 1609753 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGTAGTAGTATAAACCGATTGTGTGGAAGCCCTAGCGCCACCCCAAAGTTGAAGAAAAAACTGCCAAGTTTGCTGAGTTCTTCTCCTCTCCATTCAATTAGGGCTTCTTACCAGATTGCAGTTTGATTCAGTTTCGTGTTTGGAGGATGGGGAGGAGAGGCAAGCAGAAGAAGTTCAAGTTCGAGGAAGACGAAGACGAACTGAAAGAGAGGGCTTCGAAGACTACCGTTGTGGTGAGCAGTGACGACGAAGAGGCTAATGAAGATTTAAGCCTCAAGATTGTTGAGAAGGCTTTGAGATTGCGCTCCGGAAAGTTGGTCCGCTTTCCCGACCATAATCAGGTTGGTAACCGTGAACAGAGTGGTAATGGAGGTGTTGATGGTGTTGGAGTTGTCGAAGTGTCTTCGTCGCCTTTGGGGGATGCTGACACTGGTGCCGGAACTAGCGGAACCAGCGTCGATGTCATTGCTGCTGCTTCTGAGGCGCGGGAATTGGGGAGTAAGAAGTCGGCGAAGAAGAGGAAGAGGAAAGTTAAGAAGCTGGAAACTGAAGAGCCCCCCGTGAGTATTTTTCTACTTCCGCTTTAGTCTTTTTGAAAGAATCTAGAGGGAGGGAATAAGATATAGAAGGATTGTTTATCTTCTAGGACATTTACACGGCTTAAGAGACGGGTTCTTCAGTTCTGTTGATGACACGACGACTGTGGCGAGAAAGAAATACTTAACTCGGTCTAGGAGGGCTCATTGAACTTAAAACTGTGTACTTGGGGGGAAATTTTGCCTGCTTTTGTGGTTGATGGAAAACAAAATATTTGATAATATTACACGAGTTTCAAAGAACAAACCATCTTAAATTACTATCCAGATATTGTATTTCCTTTCCTCTAATCTGATAGAAAGGATCGTGGGGTTTGGCTATTTCTCATTGTCTTGCTGCTTCCTTTGATTTTAGGTGGTTGTCACAGAAGGAGAGAAAATCGAGACAATTCCATTGATAGATCAAGTTGATTCGGAGGAACCAAAAATTACTGAAATTGAGACAACTCCATTGATAGATCAAGTTGATTCGGAGGCACCAAACATTACTGACACAACTAATAATAACGTGTTTAGGAAACTTCTTGTGAGTCCCTTTATCTTCTCTGAATTACCGTTAAGGAAAATTGATGTTTGTGGAGGCTTAGTTTTGTGTCTCTTACATATTATTCTCCCAGCGTGGACCAAGATACTTTGACCCTCCAGATAGTTGGGGAGCGTGCTATAATTGTGGTGAGGAAGGTCATAATGCTGTCAGTTGCACATCAGCTAAACGGAAGAAACCATGCTTTGTCTGTGGAAGTCTGGAGCACAATGCAAGGAGTTGCTTTAAGGTCAGGAAGATACACAATCTATCTGCATCTTACTTCCCCTCTGTTTTTCTTTTCTTACAGCTGTCCTAGATGCTTCAAACTTTTCATTGGGGGGGGGGGGGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTAATGAAAATTAGAAATTATACTCTTTATCTAATATCTTTGTTGCTGAGGTAAATTCTTTTAACATTTTTAATGTCTCCATAGTCCTCTGGTCTGAAATCCATATTCCTCATTCTGAGGCTAGAATATGTTTATTGGCTTTCTTATGATCAATCTTTATCCAGTTTATTCACAATCAACCTGAGTGTCTCTCAGTTTTGTAATATTTTCTTCTTCTACGTTCTCCTGTTTCTTTCTCATTTCGATTTCATGAAAATTAAAAACCTGCTCCTTACTATTCGCAGGCACGAGACTGCTATATTTGCAACAAAGTTGGGCATCGTGCAAAAGACTGTCCAGAGAAGCATTTGAAGGTTTCTTCAAGCTCAAAAATATGTTTAAAATGTGGAGATCCTGGGCATGATATGTTTTCTTGCCAAAGTAGTTATCCAGATGATGATCTTAAGGTCCTAATATAGTGTACTTTCTTGGTTCTTTTCCAGAGTTATTTTGCATGCTGTATCATTTTTCTAAACGTGTCTTGTAAAACATTTTTTTTCCAGAACATACAATGCTACATTTGTAAGGAATTAGGTCACTTATGTTGTGTGAATTCCACCAGCGACACTTCAATAGACATTTCCTGCTATAAATGTGGACAGGCTGGACATACTGGTCTGGTAAGTCCTCTATGCAATATGTCATATCTGACTGTACGATGTTCACATGATACTCGTATCACCTTTCATTTTCCATTTAAGACGTTCTCTTGTTTTGTTTACGTATTACTTTTGTGTTATATATATATATATATATAAAAGTTTGTCTTGCTTTTATATGCAATTGCCCATTTGTTTTGCTCTCATGCTGGCTGTCAGTAATAATCAGCAAATCTCGGTGGCAGTTCTGAATTTTTCCGATTTTTGAGCATTGACAAATTTCTAGATTGCTGGACTTATGTATGACTGTATTTTCTTGTGCAAGTCAAATAATTGGGATTAATGAGTTGCTAATGTATGCTTGTAATTAAAGAGTTCATTGTTTAGTGAGTCAACATGTGAGAAAGTAGGAGAGGGGGCCAATATTGGCAGGGTCTATAGTGTTGCTGTCACTTATTATTGTTGTATGTCTCAGTACACGCGAGCAAAGAATATTTAAATACAGGAACTTGTAATCACTTGAACCTTGTTGACAAGAGAGCTGATTCCTTTTAAATTGAAGTTCCTTGCTTCTAAGTTTATTGCACATGGTTGATTAATCTTTTGGGCTGTGTGTATGTGAATCTACAGGCATGCTCGAGATTACGTGGGGAAGCCTCTGCTGCTGTATCAGCCAGCTCATGCTATAGATGTGGTGAAGAAGGGCATTTTGCCCGTGAGTGTACAAGTTCCGCCAAGGTAG

mRNA sequence

TAGTAGTAGTATAAACCGATTGTGTGGAAGCCCTAGCGCCACCCCAAAGTTGAAGAAAAAACTGCCAAGTTTGCTGAGTTCTTCTCCTCTCCATTCAATTAGGGCTTCTTACCAGATTGCAGTTTGATTCAGTTTCGTGTTTGGAGGATGGGGAGGAGAGGCAAGCAGAAGAAGTTCAAGTTCGAGGAAGACGAAGACGAACTGAAAGAGAGGGCTTCGAAGACTACCGTTGTGGTGAGCAGTGACGACGAAGAGGCTAATGAAGATTTAAGCCTCAAGATTGTTGAGAAGGCTTTGAGATTGCGCTCCGGAAAGTTGGTCCGCTTTCCCGACCATAATCAGGTTGGTAACCGTGAACAGAGTGGTAATGGAGGTGTTGATGGTGTTGGAGTTGTCGAAGTGTCTTCGTCGCCTTTGGGGGATGCTGACACTGGTGCCGGAACTAGCGGAACCAGCGTCGATGTCATTGCTGCTGCTTCTGAGGCGCGGGAATTGGGGAGTAAGAAGTCGGCGAAGAAGAGGAAGAGGAAAGTTAAGAAGCTGGAAACTGAAGAGCCCCCCGTGGTTGTCACAGAAGGAGAGAAAATCGAGACAATTCCATTGATAGATCAAGTTGATTCGGAGGAACCAAAAATTACTGAAATTGAGACAACTCCATTGATAGATCAAGTTGATTCGGAGGCACCAAACATTACTGACACAACTAATAATAACGTGTTTAGGAAACTTCTTCGTGGACCAAGATACTTTGACCCTCCAGATAGTTGGGGAGCGTGCTATAATTGTGGTGAGGAAGGTCATAATGCTGTCAGTTGCACATCAGCTAAACGGAAGAAACCATGCTTTGTCTGTGGAAGTCTGGAGCACAATGCAAGGAGTTGCTTTAAGGTCAGGAAGATACACAATCTATCTGCATCTTACTTCCCCTCTAAATTATACTCTTTATCTAATATCTTTGTTGCTGAGTCCTCTGGTCTGAAATCCATATTCCTCATTCTGAGGCTAGAATATGTTTATTGGCTTTCTTATGATCAATCTTTATCCAGTTTATTCACAATCAACCTGAGTGTCTCTCAGTTTTGTAATATTTTCTTCTTCTACGCACGAGACTGCTATATTTGCAACAAAGTTGGGCATCGTGCAAAAGACTGTCCAGAGAAGCATTTGAAGGTTTCTTCAAGCTCAAAAATATGTTTAAAATGTGGAGATCCTGGGCATGATATGTTTTCTTGCCAAAGTAGTTATCCAGATGATGATCTTAAGAGTTATTTTGCATGCTGTATCATTTTTCTAAACGTGTCTTGTAAAACATTTTTTTTCCAGAACATACAATGCTACATTTGTAAGGAATTAGGTCACTTATGTTGTGTGAATTCCACCAGCGACACTTCAATAGACATTTCCTGCTATAAATGTGGACAGGCTGGACATACTGGTCTGGAGAGGGGGCCAATATTGGCAGGGTCTATAGTGTTGCTGTCACTTATTATTGTTGTATGTCTCAGTACACGCGAGCAAAGAATATTTAAATACAGGAACTTGCATGCTCGAGATTACGTGGGGAAGCCTCTGCTGCTGTATCAGCCAGCTCATGCTATAGATGTGGTGAAGAAGGGCATTTTGCCCGTGAGTGTACAAGTTCCGCCAAGGTAG

Coding sequence (CDS)

ATGGGGAGGAGAGGCAAGCAGAAGAAGTTCAAGTTCGAGGAAGACGAAGACGAACTGAAAGAGAGGGCTTCGAAGACTACCGTTGTGGTGAGCAGTGACGACGAAGAGGCTAATGAAGATTTAAGCCTCAAGATTGTTGAGAAGGCTTTGAGATTGCGCTCCGGAAAGTTGGTCCGCTTTCCCGACCATAATCAGGTTGGTAACCGTGAACAGAGTGGTAATGGAGGTGTTGATGGTGTTGGAGTTGTCGAAGTGTCTTCGTCGCCTTTGGGGGATGCTGACACTGGTGCCGGAACTAGCGGAACCAGCGTCGATGTCATTGCTGCTGCTTCTGAGGCGCGGGAATTGGGGAGTAAGAAGTCGGCGAAGAAGAGGAAGAGGAAAGTTAAGAAGCTGGAAACTGAAGAGCCCCCCGTGGTTGTCACAGAAGGAGAGAAAATCGAGACAATTCCATTGATAGATCAAGTTGATTCGGAGGAACCAAAAATTACTGAAATTGAGACAACTCCATTGATAGATCAAGTTGATTCGGAGGCACCAAACATTACTGACACAACTAATAATAACGTGTTTAGGAAACTTCTTCGTGGACCAAGATACTTTGACCCTCCAGATAGTTGGGGAGCGTGCTATAATTGTGGTGAGGAAGGTCATAATGCTGTCAGTTGCACATCAGCTAAACGGAAGAAACCATGCTTTGTCTGTGGAAGTCTGGAGCACAATGCAAGGAGTTGCTTTAAGGTCAGGAAGATACACAATCTATCTGCATCTTACTTCCCCTCTAAATTATACTCTTTATCTAATATCTTTGTTGCTGAGTCCTCTGGTCTGAAATCCATATTCCTCATTCTGAGGCTAGAATATGTTTATTGGCTTTCTTATGATCAATCTTTATCCAGTTTATTCACAATCAACCTGAGTGTCTCTCAGTTTTGTAATATTTTCTTCTTCTACGCACGAGACTGCTATATTTGCAACAAAGTTGGGCATCGTGCAAAAGACTGTCCAGAGAAGCATTTGAAGGTTTCTTCAAGCTCAAAAATATGTTTAAAATGTGGAGATCCTGGGCATGATATGTTTTCTTGCCAAAGTAGTTATCCAGATGATGATCTTAAGAGTTATTTTGCATGCTGTATCATTTTTCTAAACGTGTCTTGTAAAACATTTTTTTTCCAGAACATACAATGCTACATTTGTAAGGAATTAGGTCACTTATGTTGTGTGAATTCCACCAGCGACACTTCAATAGACATTTCCTGCTATAAATGTGGACAGGCTGGACATACTGGTCTGGAGAGGGGGCCAATATTGGCAGGGTCTATAGTGTTGCTGTCACTTATTATTGTTGTATGTCTCAGTACACGCGAGCAAAGAATATTTAAATACAGGAACTTGCATGCTCGAGATTACGTGGGGAAGCCTCTGCTGCTGTATCAGCCAGCTCATGCTATAGATGTGGTGAAGAAGGGCATTTTGCCCGTGAGTGTACAAGTTCCGCCAAGGTAG

Homology

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BLAST of CmoCh11G003290 vs. Swiss-Prot
Match: HEXP_LEIMA (DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.5e-06
Identity = 36/121 (29.75%), Postives = 49/121 (40.50%), Query Frame = 1


Query: 319 ARDCYICNKVGHRAKDCPEKHLKVSSSSKICLKCGDPGHDMFSCQSS-------YPDDDL 378
           A  C+ C + GH ++DCP      ++    C KCG  GH    C SS       Y     
Sbjct: 69  AMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRG 128

Query: 379 KSYFACCIIFLNVSCKTFFFQNIQCYICKELGHLC--CVNSTSDTSI--DISCYKCGQAG 429
           +S             +  +  +  CY C + GH+   C N     S   D +CYKCG AG
Sbjct: 129 RS-----------GAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAG 178

[Close]

BLAST of CmoCh11G003290 vs. TrEMBL
Match: A0A0A0LSB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025270 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 3.5e-74
Identity = 205/453 (45.25%), Postives = 243/453 (53.64%), Query Frame = 1


Query: 1   MGRRGKQKKFKFEEDEDEL---KERASKTTVVVSSDDEEANEDLSLKIVEKALRLRSGKL 60
           MGRR KQKKFKFE+D+DEL   K  A K+T   SSDD+EANEDL+LKIVEKA++LRSGKL
Sbjct: 1   MGRRIKQKKFKFEDDDDELQVLKTAAPKSTNSPSSDDDEANEDLTLKIVEKAMQLRSGKL 60

Query: 61  VRFPDHNQVGNREQSGNGGVDGVGVVEVSSSPLGDADTGAGTSGTSVDVIAAASEARELG 120
           V     N+ G  EQSGN  V  VG +E+ SS L  A+  AGTS  S D IA AS      
Sbjct: 61  VTDAGVNKDGKCEQSGNDDVYAVGAIELVSSSLEGAEVDAGTSKASADNIATAS------ 120

Query: 121 SKKSAKKRKRKVKKLETEEPPVVVTEGEKIETIPLIDQVDSEEPKITEIETTPLIDQVDS 180
            KK+ KKRK+KVKKL TEE  VVVTE EKIET                  TT +IDQVD 
Sbjct: 121 -KKTVKKRKKKVKKLGTEERNVVVTEEEKIET------------------TTGVIDQVDP 180

Query: 181 EAPNITDTTNNNVFRKLLRGPRYFDPPDSWGACYNCGEEGHNAVSCTSAKRKKPCFVCGS 240
             PN+T TT+NNVFRKLLRGPRYFDPPDSWG CYNCGEEGHNAV+C SAKRK+PCFVCGS
Sbjct: 181 VEPNLTGTTDNNVFRKLLRGPRYFDPPDSWGTCYNCGEEGHNAVNCKSAKRKRPCFVCGS 240

Query: 241 LEHNARSCFKVRKIHNLSASYFPSKLYSLSNIFVAESSGLKSIFLILRLEYVYWLSYDQS 300
           LEHNA+SC K R                  + F+ + SG ++     + +     +   S
Sbjct: 241 LEHNAKSCSKAR------------------DCFICKKSGHRANACPEKHK-----NGSSS 300

Query: 301 LSSLFTINLSVSQFCNIFFFYARD------CYICNKVGHRAKDCPEKHLKVSSSSKICLK 360
           L        S     +    YA D      CYIC K GH    C   +    +S   C K
Sbjct: 301 LRICLKCGDSGHDMFSCQNHYADDDLKKIQCYICQKFGHLC--C--VNFTSDTSVVSCYK 360

Query: 361 CGDPGHDMFSCQSSYPDDDLKSYFACCIIFLNVSCKTFFFQNIQCYICKELGHLC--CVN 420
           CG  GH   SC        L+   +  +             + QCY C + GH    C +
Sbjct: 361 CGQTGHTGLSCSR------LRGEASGAV------------SSSQCYRCGDEGHFARECTS 383

Query: 421 ST----------SDTSIDISCYKCGQAGHTGLE 433
           ST          S  +    CYKCG+ GH   E
Sbjct: 421 STKSGKRNREEASGAASPNPCYKCGEEGHFARE 383

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BLAST of CmoCh11G003290 vs. TrEMBL
Match: A0A061F6F6_THECC (Zinc knuckle family protein, putative OS=Theobroma cacao GN=TCM_025475 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.4e-45
Identity = 164/445 (36.85%), Postives = 210/445 (47.19%), Query Frame = 1


Query: 1   MGRRGKQKKFKFEEDEDELKERASKTTVVVSS-DDEEANEDLSLKIVEKALRLRSGKLVR 60
           M +R K K  KFE +E+E     SK  + +SS DDEEANEDLSLKIVEKAL +++ KL  
Sbjct: 1   MAKRDKGKSAKFEMEENESGPLGSKQVLEISSSDDEEANEDLSLKIVEKALLVKAAKL-- 60

Query: 61  FPDHNQVGNREQSGNGGVDGVGVVEV--SSSPLGDADTGAGTSGTSVDVIAAASEARELG 120
                    R  + +G  D + VV++  SSS  G+AD  AGTSG + +        + + 
Sbjct: 61  -------NERNDAVSGDRDVLSVVDLTSSSSEEGEADV-AGTSGVAEEADFDLKVNKTVT 120

Query: 121 SKKSAKKRKRKVKKLETEEPPVVVTEGEKIETIPLIDQVDSEEPKITEIETTPLIDQVDS 180
            KK  K +  KV         ++  +G+K E I   + V+       E E     + ++S
Sbjct: 121 IKKKKKTKSEKV---------IITEDGDKAEMIEKAETVE-------EAEMAKAAETIES 180

Query: 181 EAPNITDTTNNNVFRKLLRGPRYFDPPD-SWGACYNCGEEGHNAVSCTSA-KRKKPCFVC 240
             PN  D ++N V RKLLRGPRYFDPPD SW  C+NCGEEGH AV+CTSA KRKKPCFVC
Sbjct: 181 VDPNTVDISDNIVLRKLLRGPRYFDPPDSSWQTCFNCGEEGHMAVNCTSASKRKKPCFVC 240

Query: 241 GSLEHNARSCFKVRKIHNLSASYFPSKLYSLSNIFVAESSGLKSIFLILRL------EYV 300
           GSL+H AR C K +       S   +K     +      SG K+  + LR        + 
Sbjct: 241 GSLDHGARQCSKAQDCFICKKSGHRAK-----DCPDKHKSGSKNGKICLRCGDSGHDMFS 300

Query: 301 YWLSYDQSLSSLFTINLSVSQFCNIFFFYARDCYICNKVGHRAKDCPEKHLKVSSSSKIC 360
            W  Y          +L   Q           CYIC   GH    C    +  S+S   C
Sbjct: 301 CWKDYSHG-------DLKEIQ-----------CYICKNFGHL---CCVNFVDTSASEVSC 360

Query: 361 LKCGDPGHDMFSCQSSYPDDDLKSYFACCIIFLNVSCKTFFFQNIQCYICKELGHLC--C 420
            +CG  GH   SC  S  D    +  A   I               CY C E GH    C
Sbjct: 361 YRCGQLGHTGLSCGKSRGDTKETTDNASPSI---------------CYKCGEGGHFAREC 375

Query: 421 VNSTSDTSIDISCYKCGQAGHTGLE 433
            N T  +S   SCYKCG+ GH   E
Sbjct: 421 PNGTVSSS---SCYKCGEGGHFARE 375

[Close]

BLAST of CmoCh11G003290 vs. TrEMBL
Match: A0A0D2UEF8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G139700 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 4.7e-39
Identity = 156/390 (40.00%), Postives = 197/390 (50.51%), Query Frame = 1


Query: 1   MGRRGKQKKFKFEEDEDELKERASKTTVVVSS-DDEEANEDLSLKIVEKALRLRSGKLVR 60
           M ++GK K  KFE +E+E     SK  +V+SS DDEEANEDLSLKIVEKAL +   K  R
Sbjct: 1   MAKKGKAKSAKFEIEENESGPLDSKPLMVLSSSDDEEANEDLSLKIVEKALLV---KATR 60

Query: 61  FPDHNQVGNREQSGNGGVDGVGVVEVSSSPLGDADTGAGTSGTSVDVIAAASEARELGSK 120
           F +    G    S + GV  V VV ++SS  G +D  AGTSG   +         +L SK
Sbjct: 61  FSE----GYHGVSDDPGV--VSVVGLASSSRGGSDV-AGTSGGREEADL------DLESK 120

Query: 121 KSAKKRKRKVKKLETEEPPVVVTEGEKIETIPLIDQVDSEEPKITEIETTPLIDQVDSEA 180
           K  K++K+K K   TE+    VT  E      +I++V++ E    EI     ++ V+S  
Sbjct: 121 KIVKRKKKKTK---TEK----VTVAEDRNKAEMIEKVETVE----EIIMAKDVETVESLD 180

Query: 181 PNITDTTNNNVFRKLLRGPRYFDPPDS-WGACYNCGEEGHNAVSCTSA-KRKKPCFVCGS 240
            N  D ++N V RKLLRG RYFDPPDS W  CYNCGEEGH AV+C SA KRKKPCF+CGS
Sbjct: 181 SNTLDKSDNIVLRKLLRGARYFDPPDSGWETCYNCGEEGHMAVNCKSASKRKKPCFLCGS 240

Query: 241 LEHNARSCFKVR-----KIHNLSASYFPSKLYSLS--NIFVAESSGLKSIFLILRLEYVY 300
           L+H AR C K +     K     A   P K  S S    F     G        R +Y  
Sbjct: 241 LDHGARQCSKTQDCFICKKSGHRAKDCPDKHNSGSKHGRFCLRCGGSGHDMFSCRNDY-- 300

Query: 301 WLSYDQSLSSLFTINLSVSQFC--NIFFFYARD--CYICNKVGHRAKDC-----PEKHLK 360
             S+D        +  S    C  N     AR+  CY C +VGH    C       K   
Sbjct: 301 --SHDDIKEIQCYVCKSFGHLCCVNSVDTNAREVSCYRCGQVGHTGLSCGRSRGETKETT 359

Query: 361 VSSSSKICLKCGDPGHDMFSCQSSYPDDDL 372
            + S  +C KCG+ GH    C +S P   L
Sbjct: 361 DNGSPSVCYKCGEGGHVARECITSIPSSSL 359

[Close]

BLAST of CmoCh11G003290 vs. TrEMBL
Match: A0A059AAY2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00598 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 5.8e-37
Identity = 152/445 (34.16%), Postives = 204/445 (45.84%), Query Frame = 1


Query: 1   MGRRGKQKKFKFEEDEDELKERASKTTVVVSSDD--EEANEDLSLKIVEKALRLRSGKLV 60
           MGRR K    + +E ++   E  S   +V S DD  EEANEDLSLKIVEKAL  R+ KL 
Sbjct: 1   MGRR-KLTAARLDEGDEAEHEPKSAAPLVGSGDDDDEEANEDLSLKIVEKALSARAAKLA 60

Query: 61  RFPDHNQVGNREQSGNGGVDGVGVVEVSSSPLGDADTGAGTSGTSVDVIAAASEARELGS 120
                               GVGV E         + G   +G +V V+      +E   
Sbjct: 61  STSP----------------GVGVSE---------EDGDRAAGGAVVVLRENDVIKEEEK 120

Query: 121 KKSAKKRKRKVKKLETEEPPVVVTEGEKIETIPLIDQVDSEEPKITEIETTPLIDQVDSE 180
            + A+K++R+ KK          ++G +   + +ID VD EE K   +  T +++ VD +
Sbjct: 121 AEKAQKKERRKKK----------SKGRENRELTIID-VDEEE-KEEVVNVTEVLESVDPK 180

Query: 181 APNITDTTNNNVFRKLLRGPRYFDPPDS-WGACYNCGEEGHNAVSCTSAKRKKPCFVCGS 240
              I D   N + RKLLRGPRYFDPPDS WG CYNCG EGH AV+CTS KR++PCFVCGS
Sbjct: 181 KVEIAD---NIILRKLLRGPRYFDPPDSSWGTCYNCGVEGHTAVNCTSQKRRRPCFVCGS 240

Query: 241 LEHNARSCFKVRKIHNLSASYFPSKLYSLSNIFVAESSGLKSIFLILRLEYVYWLSYDQS 300
           LEHNA+ C K +       S   +K     +    + +G ++  + LR  +        S
Sbjct: 241 LEHNAKQCTKAQDCFICKKSGHRAK-----DCPEKQKAGSQTTKICLRCGH--------S 300

Query: 301 LSSLFTINLSVSQFCNIFFFYARDCYICNKVGHRAKDCPEKHLKVSSSSKICLKCGDPGH 360
              +F+   S S            CYIC + GH    C    +        C KCG  GH
Sbjct: 301 GHDMFSCRSSYS----AADLKEIQCYICKEFGHL---CCVDSVDTDPCEVSCYKCGCLGH 360

Query: 361 DMFSCQ----SSYPDDDLKSYFACCII-FLNVSCKTFFFQNIQ---CYICKELGHLC--C 420
              +C      S  D    S + C         C+      +    CY C E GH    C
Sbjct: 361 TGLACSKVRFDSMGDSTPSSCYKCGQEGHFARECRNSTRGEVTPSLCYKCGEGGHFAREC 384

Query: 421 VNSTSDTSIDISCYKCGQAGHTGLE 433
            NST+  +   +CYKCG+ GH   E
Sbjct: 421 RNSTTYEAAPSTCYKCGRDGHFARE 384

[Close]

BLAST of CmoCh11G003290 vs. TrEMBL
Match: M5WL34_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016997mg PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 3.2e-35
Identity = 136/397 (34.26%), Postives = 192/397 (48.36%), Query Frame = 1


Query: 1   MGRRGKQK-KFKFEEDEDELKERASKTTVVV-----SSDDEEANEDLSLKIVEKALRLRS 60
           MG+R ++K KF ++E  +E +  A K          SSDD+EANEDLSLKIVEKA+ +R+
Sbjct: 1   MGKREREKAKFDWDEVSEEERNLAEKNPSKSVAERNSSDDDEANEDLSLKIVEKAMLMRA 60

Query: 61  GKLVRFPDHNQVGNREQSGNGGVDGVGVVEVSSSPLGDADTGAGTSGTSVDVIAAASEAR 120
            KL   PD++ V              G+VE+ SS          TS    +V +A  E +
Sbjct: 61  AKLA--PDNDVVLGEPS---------GLVELPSS----------TSLQEAEVASADLETK 120

Query: 121 ELGSKKSAKKRKRKVKKLETEEPPVVVTEGEKIETIPLIDQVDSEEPKITEIETTPLIDQ 180
            +  ++    RK+++KK + EE  VV  E EK+ET   +D  D+E+    EI        
Sbjct: 121 TVRKRE----RKKRIKKTKIEEA-VVANEEEKVETANAVDLADAEQLNNVEI-------- 180

Query: 181 VDSEAPNITDTTNNNVFRKLLRGPRYFDPPDS-WGACYNCGEEGHNAVSCTSAKRKKPCF 240
                      ++N V RKLLRGPRYFDPP+S WG C+NCGEEGH AV+CT AKRKKPCF
Sbjct: 181 -----------SDNVVLRKLLRGPRYFDPPNSSWGTCFNCGEEGHAAVNCTIAKRKKPCF 240

Query: 241 VCGSLEHNARSCFK---VRKIHNLSASYFPSK--------------------LYSLSNIF 300
           VCGSLEH+AR C K   + K     A   P K                    ++S  N +
Sbjct: 241 VCGSLEHHARDCRKDCFICKKGGHYAKDCPEKQKRGSLKSQICLKCGDSGHDMFSCRNDY 300

Query: 301 VAESSGLKSIFLILRLEYVYWLSYDQSLSSLFTINLSVSQFCNIFFFYARDCYICNKVGH 360
           + E       ++  R  ++  + Y         ++ S  +           CY C ++GH
Sbjct: 301 LTEDLKEIQCYVCKRFGHLCCVKY---------VDTSPQEV---------SCYRCGQLGH 334

Query: 361 RAKDCPEKHLKVSS---SSKICLKCGDPGHDMFSCQS 365
               C       ++   S ++C KCG+ GH   +C S
Sbjct: 361 TGMGCVSLRGGETNDFVSPRLCYKCGEGGHYARACTS 334

[Close]

BLAST of CmoCh11G003290 vs. TAIR10
Match: AT3G43590.1 (AT3G43590.1 zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 137.5 bits (345), Expect = 2.3e-32
Identity = 139/450 (30.89%), Postives = 195/450 (43.33%), Query Frame = 1


Query: 1   MGRRGKQKKFKFEEDEDELKERASKTTVVVSS---DDEEANEDLSLKIVEKALRLRSGKL 60
           M R+ K +KF F++ EDE +E     T V +    DD+EANEDLSLKI+EKAL  R    
Sbjct: 1   MPRQNKDEKFVFDDGEDEDREDPVAITEVDNGEEEDDDEANEDLSLKILEKALSRR---- 60

Query: 61  VRFPDHNQVGNREQSGNGGVDGVGVVEVSSSPLGDADTGAGTSGTSVDVIAAASEARELG 120
                   VGN+  S                   D  + +G   T V V    S+     
Sbjct: 61  -------DVGNKLDS-------------------DLSSDSGVVST-VMVNGVKSKV---- 120

Query: 121 SKKSAKKRKRKVKKLETE-EPPVVVTEGEKIETIPLIDQVDSEEPKITEIETTPLIDQVD 180
            KKS   +K K  KLE + E P+V  + ++ + +  I + + E+ ++             
Sbjct: 121 -KKSESSKKMKRNKLEADHEIPIVWNDQDEEKVVEEIVKGEGEDDEVER----------- 180

Query: 181 SEAPNITDTTNNNVFRKLLRGPRYFDPPDS-WGACYNCGEEGHNAVSC-TSAKRKKPCFV 240
           S+ P   +T +N V +KLLRG RYFDPPD+ W +CY+CGE+GH + +C T  KR+KPCF+
Sbjct: 181 SDEPKTEETASNLVLKKLLRGARYFDPPDAGWVSCYSCGEQGHTSFNCPTPTKRRKPCFI 240

Query: 241 CGSLEHNARSCFK-----VRKIHNLSASYFPSKLYSLSNIFVAESSGLKSIFLILRLEYV 300
           CGSLEH A+ C K     + K     A   P K  + S   V    G     +IL     
Sbjct: 241 CGSLEHGAKQCSKGHDCYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGHDMIL----- 300

Query: 301 YWLSYDQSLSSLFTINLSVSQFCNIFFFYARDCYICNKVGHRAKDCPEKHLKVSSSSKIC 360
               Y+ S   L  +                 CYIC   GH     P   L  + S   C
Sbjct: 301 --CKYEYSKEDLKDV----------------QCYICKSFGHLCCVEPGNSLSWAVS---C 360

Query: 361 LKCGDPGHDMFSCQSSYPDDDLKSYFACCIIFLNVSCKTFFFQNIQCYICKELGHLC--C 420
            +CG  GH   +C   Y + +         +F +           +CY C E GH    C
Sbjct: 361 YRCGQLGHSGLACGRHYEESNENDSATPERLFNSREAS-------ECYRCGEEGHFAREC 370

Query: 421 VNSTSDTS-----IDISCYKCGQAGHTGLE 433
            NS+S ++         CY+C  +GH   E
Sbjct: 421 PNSSSISTSHGRESQTLCYRCNGSGHFARE 370

[Close]

BLAST of CmoCh11G003290 vs. TAIR10
Match: AT5G36240.1 (AT5G36240.1 zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 82.4 bits (202), Expect = 8.6e-16
Identity = 37/89 (41.57%), Postives = 48/89 (53.93%), Query Frame = 1


Query: 346 SKICLKCGDPGHDMFSCQSSYPDDDLKSYFACCIIFLNVSCKTFFFQNIQCYICKELGHL 405
           +++CL+CG  GHDM  C+  Y  +DLK                    NI+CY+C  LGHL
Sbjct: 25  AEVCLRCGGFGHDMTLCKYEYSHEDLK--------------------NIKCYVCNSLGHL 84

Query: 406 CCVNSTSDTSIDISCYKCGQAGHTGLERG 435
           CC+      S  +SCY+CGQ GHTGL  G
Sbjct: 85  CCIEPGHTQSWTVSCYRCGQLGHTGLACG 93

[Close]

BLAST of CmoCh11G003290 vs. TAIR10
Match: AT3G43490.1 (AT3G43490.1 Zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 81.3 bits (199), Expect = 1.9e-15
Identity = 85/250 (34.00%), Postives = 109/250 (43.60%), Query Frame = 1


Query: 1   MGRRGKQKKFKFEEDEDELKERASKTTVVVSSDDEEANEDLSLKIVEKALRLRSGKLVRF 60
           M  + K   F F++ ED        T  ++   D+EANEDL LKI+EKA   R       
Sbjct: 1   MPPKRKDINFLFDDGED--------TVAII---DDEANEDLRLKILEKAFSRR------- 60

Query: 61  PDHNQVGNREQSGNGGVDGVGVVEVSSSPLGDADTGAGTSGTSVDVIAAASEARELGSKK 120
                V N+  S           ++S  P           G    V+    ++ E+ + K
Sbjct: 61  ----NVDNKLDS-----------DLSFDP-----------GVVSTVMVNGGKSEEVKNSK 120

Query: 121 SAKKRKRKVKKLETEEPPVVVTEGEKIETIPLIDQVDSEEPKITEIETTPLIDQVDSEAP 180
           S KK KR   KLE     V      + E   + D V  EE               D E  
Sbjct: 121 SNKKMKRN--KLEAANEIVTHCVERQDEDNMVEDVVRGEEE--------------DGE-- 180

Query: 181 NITDTTNNNVFRKLLRGPRYFDPPDS-WGACYNCGEEGHNAVSC-TSAKRKKPCFVCGSL 240
               TT+N+V  KLLRG RYFDP D+ W  CY+CGE+ H  VSC T    +K CF+C SL
Sbjct: 181 ----TTSNSVMTKLLRGARYFDPLDAGWVTCYSCGEKDHITVSCPTLTNCRKSCFICASL 184

Query: 241 EHNARSCFKV 249
           EH AR C KV
Sbjct: 241 EHGARQCTKV 184

[Close]

BLAST of CmoCh11G003290 vs. TAIR10
Match: AT5G52380.1 (AT5G52380.1 VASCULAR-RELATED NAC-DOMAIN 6)

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-08
Identity = 36/110 (32.73%), Postives = 46/110 (41.82%), Query Frame = 1


Query: 322 CYICNKVGHRAKDCPEKHLKVSSSSKICLKCGDPGHDMFSCQSSYPDDDLKSYFACCIIF 381
           C  C + GH  K+CPEK+   SS  K+C  CGD GH +  C   YP +D  + FA     
Sbjct: 101 CLQCRRRGHSLKNCPEKN-NESSEKKLCYNCGDTGHSLSHC--PYPMEDGGTKFA----- 160

Query: 382 LNVSCKTFFFQNIQCYICKELGHL---CCVNSTSDTSIDISCYKCGQAGH 429
                         C+ICK  GH+   C  N      +   C  CG   H
Sbjct: 161 -------------SCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAH 189

[Close]

BLAST of CmoCh11G003290 vs. TAIR10
Match: AT3G42860.1 (AT3G42860.1 zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-07
Identity = 39/128 (30.47%), Postives = 54/128 (42.19%), Query Frame = 1


Query: 322 CYICNKVGHRAKDCPEKH----LKVSSSSKICLKCGDPGHDMFSCQS-----SYPDDDLK 381
           CY C K GH A+DC  +     +K +S++  C KCG PGH    C +      Y    +K
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMK 298

Query: 382 SYFACCIIFLNVSCKTFFFQNIQCYICKELGHLC--CVNSTSD----------TSIDISC 429
           S  +                + +CY C + GH    C   +S+          TS    C
Sbjct: 299 SSSS----------------SGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDC 350

[Close]

BLAST of CmoCh11G003290 vs. NCBI nr
Match: gi|659107077|ref|XP_008453510.1| (PREDICTED: uncharacterized protein LOC103494199 isoform X1 [Cucumis melo])

HSP 1 Score: 290.0 bits (741), Expect = 7.7e-75
Identity = 204/470 (43.40%), Postives = 243/470 (51.70%), Query Frame = 1


Query: 1   MGRRGKQKKFKFEEDEDEL---KERASKTTVVVSSDDEEANEDLSLKIVEKALRLRSGKL 60
           MGRR KQKKFKFE+D+DEL   K  A K    +SSDD+EANEDLSLKIVEKA++LRSGKL
Sbjct: 1   MGRRIKQKKFKFEDDDDELQVLKTVAPKFAKSLSSDDDEANEDLSLKIVEKAMQLRSGKL 60

Query: 61  VRFPDHNQVGNREQSGNGGVDGVGVVEVSSSPLGDADTGAGTSGTSVDVIAAASEARELG 120
           V     N+ G  EQSGNG V  VG +E+  S L  AD  AGTS  S D IA A       
Sbjct: 61  VTDAGVNKDGKCEQSGNGDVAAVGAIELVPSSLEGADADAGTSKASADSIATA------- 120

Query: 121 SKKSAKKRKRKVKKLETEEPPVVVTEGEKIETIPLIDQVDSEEPKITEIETTPLIDQVDS 180
           SKK+ KKRK+KVKKL TEE   VVTEGEK                   IETT +IDQVDS
Sbjct: 121 SKKTVKKRKKKVKKLGTEERDAVVTEGEK-------------------IETTGVIDQVDS 180

Query: 181 EAPNITDTTNNNVFRKLLRGPRYFDPPDSWGACYNCGEEGHNAVSCTSAKRKKPCFVCGS 240
             PN T TT+NNVFRKLLRGPRYFDPPDSWG CYNCGEEGHNAV+CTSAKRK+PCFVCGS
Sbjct: 181 VEPNSTATTDNNVFRKLLRGPRYFDPPDSWGTCYNCGEEGHNAVNCTSAKRKRPCFVCGS 240

Query: 241 LEHNARSCFKVR-----------------KIHNLSASY--------FPSKLYSLSNIFVA 300
           LEHNA+SC K R                 K  N+S+S             ++S  N +  
Sbjct: 241 LEHNAKSCSKARDCFICKKGGHRANVCPEKHKNVSSSLKICLKCGDSGHDMFSCQNHYAD 300

Query: 301 ESSGLKSIFLILRLEYVYWLSYDQSLSSLFTINLSVSQFCNIFFFYARDCYICNKVGHRA 360
           +       ++  +  ++  ++     S +                    CY C + GH  
Sbjct: 301 DDLKKIQCYICKKFGHLCCVNSTSDTSVV-------------------SCYKCGQTGHTG 360

Query: 361 KDCPEKHLKVSS--SSKICLKCGDPGHDMFSCQSSYPDDDLKSYFACCIIFLNVSCKTFF 420
             C     + S   SS  C +CG+ GH    C SS                 N    +  
Sbjct: 361 LSCSRLRGEASGAVSSSQCYRCGEEGHFARECTSSTKSGK-----------RNREEASGA 414

Query: 421 FQNIQCYICKELGHLC--CVNS----------TSDTSIDISCYKCGQAGH 429
                CY C E GH    C +S          TS  +   SCY+CG+ GH
Sbjct: 421 ASPSPCYKCGEEGHFARECTSSTKGGKRILEETSGAASPSSCYRCGEQGH 414

[Close]

BLAST of CmoCh11G003290 vs. NCBI nr
Match: gi|659107079|ref|XP_008453511.1| (PREDICTED: uncharacterized protein LOC103494199 isoform X2 [Cucumis melo])

HSP 1 Score: 290.0 bits (741), Expect = 7.7e-75
Identity = 204/470 (43.40%), Postives = 243/470 (51.70%), Query Frame = 1


Query: 1   MGRRGKQKKFKFEEDEDEL---KERASKTTVVVSSDDEEANEDLSLKIVEKALRLRSGKL 60
           MGRR KQKKFKFE+D+DEL   K  A K    +SSDD+EANEDLSLKIVEKA++LRSGKL
Sbjct: 1   MGRRIKQKKFKFEDDDDELQVLKTVAPKFAKSLSSDDDEANEDLSLKIVEKAMQLRSGKL 60

Query: 61  VRFPDHNQVGNREQSGNGGVDGVGVVEVSSSPLGDADTGAGTSGTSVDVIAAASEARELG 120
           V     N+ G  EQSGNG V  VG +E+  S L  AD  AGTS  S D IA A       
Sbjct: 61  VTDAGVNKDGKCEQSGNGDVAAVGAIELVPSSLEGADADAGTSKASADSIATA------- 120

Query: 121 SKKSAKKRKRKVKKLETEEPPVVVTEGEKIETIPLIDQVDSEEPKITEIETTPLIDQVDS 180
           SKK+ KKRK+KVKKL TEE   VVTEGEK                   IETT +IDQVDS
Sbjct: 121 SKKTVKKRKKKVKKLGTEERDAVVTEGEK-------------------IETTGVIDQVDS 180

Query: 181 EAPNITDTTNNNVFRKLLRGPRYFDPPDSWGACYNCGEEGHNAVSCTSAKRKKPCFVCGS 240
             PN T TT+NNVFRKLLRGPRYFDPPDSWG CYNCGEEGHNAV+CTSAKRK+PCFVCGS
Sbjct: 181 VEPNSTATTDNNVFRKLLRGPRYFDPPDSWGTCYNCGEEGHNAVNCTSAKRKRPCFVCGS 240

Query: 241 LEHNARSCFKVR-----------------KIHNLSASY--------FPSKLYSLSNIFVA 300
           LEHNA+SC K R                 K  N+S+S             ++S  N +  
Sbjct: 241 LEHNAKSCSKARDCFICKKGGHRANVCPEKHKNVSSSLKICLKCGDSGHDMFSCQNHYAD 300

Query: 301 ESSGLKSIFLILRLEYVYWLSYDQSLSSLFTINLSVSQFCNIFFFYARDCYICNKVGHRA 360
           +       ++  +  ++  ++     S +                    CY C + GH  
Sbjct: 301 DDLKKIQCYICKKFGHLCCVNSTSDTSVV-------------------SCYKCGQTGHTG 360

Query: 361 KDCPEKHLKVSS--SSKICLKCGDPGHDMFSCQSSYPDDDLKSYFACCIIFLNVSCKTFF 420
             C     + S   SS  C +CG+ GH    C SS                 N    +  
Sbjct: 361 LSCSRLRGEASGAVSSSQCYRCGEEGHFARECTSSTKSGK-----------RNREEASGA 414

Query: 421 FQNIQCYICKELGHLC--CVNS----------TSDTSIDISCYKCGQAGH 429
                CY C E GH    C +S          TS  +   SCY+CG+ GH
Sbjct: 421 ASPSPCYKCGEEGHFARECTSSTKGGKRILEETSGAASPSSCYRCGEQGH 414

[Close]

BLAST of CmoCh11G003290 vs. NCBI nr
Match: gi|659107081|ref|XP_008453512.1| (PREDICTED: zinc finger CCHC domain-containing protein 7 isoform X3 [Cucumis melo])

HSP 1 Score: 290.0 bits (741), Expect = 7.7e-75
Identity = 204/470 (43.40%), Postives = 243/470 (51.70%), Query Frame = 1


Query: 1   MGRRGKQKKFKFEEDEDEL---KERASKTTVVVSSDDEEANEDLSLKIVEKALRLRSGKL 60
           MGRR KQKKFKFE+D+DEL   K  A K    +SSDD+EANEDLSLKIVEKA++LRSGKL
Sbjct: 1   MGRRIKQKKFKFEDDDDELQVLKTVAPKFAKSLSSDDDEANEDLSLKIVEKAMQLRSGKL 60

Query: 61  VRFPDHNQVGNREQSGNGGVDGVGVVEVSSSPLGDADTGAGTSGTSVDVIAAASEARELG 120
           V     N+ G  EQSGNG V  VG +E+  S L  AD  AGTS  S D IA A       
Sbjct: 61  VTDAGVNKDGKCEQSGNGDVAAVGAIELVPSSLEGADADAGTSKASADSIATA------- 120

Query: 121 SKKSAKKRKRKVKKLETEEPPVVVTEGEKIETIPLIDQVDSEEPKITEIETTPLIDQVDS 180
           SKK+ KKRK+KVKKL TEE   VVTEGEK                   IETT +IDQVDS
Sbjct: 121 SKKTVKKRKKKVKKLGTEERDAVVTEGEK-------------------IETTGVIDQVDS 180

Query: 181 EAPNITDTTNNNVFRKLLRGPRYFDPPDSWGACYNCGEEGHNAVSCTSAKRKKPCFVCGS 240
             PN T TT+NNVFRKLLRGPRYFDPPDSWG CYNCGEEGHNAV+CTSAKRK+PCFVCGS
Sbjct: 181 VEPNSTATTDNNVFRKLLRGPRYFDPPDSWGTCYNCGEEGHNAVNCTSAKRKRPCFVCGS 240

Query: 241 LEHNARSCFKVR-----------------KIHNLSASY--------FPSKLYSLSNIFVA 300
           LEHNA+SC K R                 K  N+S+S             ++S  N +  
Sbjct: 241 LEHNAKSCSKARDCFICKKGGHRANVCPEKHKNVSSSLKICLKCGDSGHDMFSCQNHYAD 300

Query: 301 ESSGLKSIFLILRLEYVYWLSYDQSLSSLFTINLSVSQFCNIFFFYARDCYICNKVGHRA 360
           +       ++  +  ++  ++     S +                    CY C + GH  
Sbjct: 301 DDLKKIQCYICKKFGHLCCVNSTSDTSVV-------------------SCYKCGQTGHTG 360

Query: 361 KDCPEKHLKVSS--SSKICLKCGDPGHDMFSCQSSYPDDDLKSYFACCIIFLNVSCKTFF 420
             C     + S   SS  C +CG+ GH    C SS                 N    +  
Sbjct: 361 LSCSRLRGEASGAVSSSQCYRCGEEGHFARECTSSTKSGK-----------RNREEASGA 414

Query: 421 FQNIQCYICKELGHLC--CVNS----------TSDTSIDISCYKCGQAGH 429
                CY C E GH    C +S          TS  +   SCY+CG+ GH
Sbjct: 421 ASPSPCYKCGEEGHFARECTSSTKGGKRILEETSGAASPSSCYRCGEQGH 414

[Close]

BLAST of CmoCh11G003290 vs. NCBI nr
Match: gi|659107083|ref|XP_008453513.1| (PREDICTED: zinc finger CCHC domain-containing protein 7 isoform X4 [Cucumis melo])

HSP 1 Score: 290.0 bits (741), Expect = 7.7e-75
Identity = 204/470 (43.40%), Postives = 243/470 (51.70%), Query Frame = 1


Query: 1   MGRRGKQKKFKFEEDEDEL---KERASKTTVVVSSDDEEANEDLSLKIVEKALRLRSGKL 60
           MGRR KQKKFKFE+D+DEL   K  A K    +SSDD+EANEDLSLKIVEKA++LRSGKL
Sbjct: 1   MGRRIKQKKFKFEDDDDELQVLKTVAPKFAKSLSSDDDEANEDLSLKIVEKAMQLRSGKL 60

Query: 61  VRFPDHNQVGNREQSGNGGVDGVGVVEVSSSPLGDADTGAGTSGTSVDVIAAASEARELG 120
           V     N+ G  EQSGNG V  VG +E+  S L  AD  AGTS  S D IA A       
Sbjct: 61  VTDAGVNKDGKCEQSGNGDVAAVGAIELVPSSLEGADADAGTSKASADSIATA------- 120

Query: 121 SKKSAKKRKRKVKKLETEEPPVVVTEGEKIETIPLIDQVDSEEPKITEIETTPLIDQVDS 180
           SKK+ KKRK+KVKKL TEE   VVTEGEK                   IETT +IDQVDS
Sbjct: 121 SKKTVKKRKKKVKKLGTEERDAVVTEGEK-------------------IETTGVIDQVDS 180

Query: 181 EAPNITDTTNNNVFRKLLRGPRYFDPPDSWGACYNCGEEGHNAVSCTSAKRKKPCFVCGS 240
             PN T TT+NNVFRKLLRGPRYFDPPDSWG CYNCGEEGHNAV+CTSAKRK+PCFVCGS
Sbjct: 181 VEPNSTATTDNNVFRKLLRGPRYFDPPDSWGTCYNCGEEGHNAVNCTSAKRKRPCFVCGS 240

Query: 241 LEHNARSCFKVR-----------------KIHNLSASY--------FPSKLYSLSNIFVA 300
           LEHNA+SC K R                 K  N+S+S             ++S  N +  
Sbjct: 241 LEHNAKSCSKARDCFICKKGGHRANVCPEKHKNVSSSLKICLKCGDSGHDMFSCQNHYAD 300

Query: 301 ESSGLKSIFLILRLEYVYWLSYDQSLSSLFTINLSVSQFCNIFFFYARDCYICNKVGHRA 360
           +       ++  +  ++  ++     S +                    CY C + GH  
Sbjct: 301 DDLKKIQCYICKKFGHLCCVNSTSDTSVV-------------------SCYKCGQTGHTG 360

Query: 361 KDCPEKHLKVSS--SSKICLKCGDPGHDMFSCQSSYPDDDLKSYFACCIIFLNVSCKTFF 420
             C     + S   SS  C +CG+ GH    C SS                 N    +  
Sbjct: 361 LSCSRLRGEASGAVSSSQCYRCGEEGHFARECTSSTKSGK-----------RNREEASGA 414

Query: 421 FQNIQCYICKELGHLC--CVNS----------TSDTSIDISCYKCGQAGH 429
                CY C E GH    C +S          TS  +   SCY+CG+ GH
Sbjct: 421 ASPSPCYKCGEEGHFARECTSSTKGGKRILEETSGAASPSSCYRCGEQGH 414

[Close]

BLAST of CmoCh11G003290 vs. NCBI nr
Match: gi|778656547|ref|XP_011649266.1| (PREDICTED: zinc finger CCHC domain-containing protein 7 isoform X1 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 5.0e-74
Identity = 205/453 (45.25%), Postives = 243/453 (53.64%), Query Frame = 1


Query: 1   MGRRGKQKKFKFEEDEDEL---KERASKTTVVVSSDDEEANEDLSLKIVEKALRLRSGKL 60
           MGRR KQKKFKFE+D+DEL   K  A K+T   SSDD+EANEDL+LKIVEKA++LRSGKL
Sbjct: 1   MGRRIKQKKFKFEDDDDELQVLKTAAPKSTNSPSSDDDEANEDLTLKIVEKAMQLRSGKL 60

Query: 61  VRFPDHNQVGNREQSGNGGVDGVGVVEVSSSPLGDADTGAGTSGTSVDVIAAASEARELG 120
           V     N+ G  EQSGN  V  VG +E+ SS L  A+  AGTS  S D IA AS      
Sbjct: 61  VTDAGVNKDGKCEQSGNDDVYAVGAIELVSSSLEGAEVDAGTSKASADNIATAS------ 120

Query: 121 SKKSAKKRKRKVKKLETEEPPVVVTEGEKIETIPLIDQVDSEEPKITEIETTPLIDQVDS 180
            KK+ KKRK+KVKKL TEE  VVVTE EKIET                  TT +IDQVD 
Sbjct: 121 -KKTVKKRKKKVKKLGTEERNVVVTEEEKIET------------------TTGVIDQVDP 180

Query: 181 EAPNITDTTNNNVFRKLLRGPRYFDPPDSWGACYNCGEEGHNAVSCTSAKRKKPCFVCGS 240
             PN+T TT+NNVFRKLLRGPRYFDPPDSWG CYNCGEEGHNAV+C SAKRK+PCFVCGS
Sbjct: 181 VEPNLTGTTDNNVFRKLLRGPRYFDPPDSWGTCYNCGEEGHNAVNCKSAKRKRPCFVCGS 240

Query: 241 LEHNARSCFKVRKIHNLSASYFPSKLYSLSNIFVAESSGLKSIFLILRLEYVYWLSYDQS 300
           LEHNA+SC K R                  + F+ + SG ++     + +     +   S
Sbjct: 241 LEHNAKSCSKAR------------------DCFICKKSGHRANACPEKHK-----NGSSS 300

Query: 301 LSSLFTINLSVSQFCNIFFFYARD------CYICNKVGHRAKDCPEKHLKVSSSSKICLK 360
           L        S     +    YA D      CYIC K GH    C   +    +S   C K
Sbjct: 301 LRICLKCGDSGHDMFSCQNHYADDDLKKIQCYICQKFGHLC--C--VNFTSDTSVVSCYK 360

Query: 361 CGDPGHDMFSCQSSYPDDDLKSYFACCIIFLNVSCKTFFFQNIQCYICKELGHLC--CVN 420
           CG  GH   SC        L+   +  +             + QCY C + GH    C +
Sbjct: 361 CGQTGHTGLSCSR------LRGEASGAV------------SSSQCYRCGDEGHFARECTS 383

Query: 421 ST----------SDTSIDISCYKCGQAGHTGLE 433
           ST          S  +    CYKCG+ GH   E
Sbjct: 421 STKSGKRNREEASGAASPNPCYKCGEEGHFARE 383

The following BLAST results are available for this feature:

BLAST of CmoCh11G003290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HEXP_LEIMA	4.5e-06	29.75	DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1	[more]

BLAST of CmoCh11G003290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSB8_CUCSA	3.5e-74	45.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025270 PE=4 SV=1	[more]
A0A061F6F6_THECC	3.4e-45	36.85	Zinc knuckle family protein, putative OS=Theobroma cacao GN=TCM_025475 PE=4 SV=1	[more]
A0A0D2UEF8_GOSRA	4.7e-39	40.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G139700 PE=4 SV=1	[more]
A0A059AAY2_EUCGR	5.8e-37	34.16	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00598 PE=4 SV=1	[more]
M5WL34_PRUPE	3.2e-35	34.26	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016997mg PE=4 SV=1	[more]

BLAST of CmoCh11G003290 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G43590.1	2.3e-32	30.89	zinc knuckle (CCHC-type) family protein	[more]
AT5G36240.1	8.6e-16	41.57	zinc knuckle (CCHC-type) family protein	[more]
AT3G43490.1	1.9e-15	34.00	Zinc knuckle (CCHC-type) family protein	[more]
AT5G52380.1	1.3e-08	32.73	VASCULAR-RELATED NAC-DOMAIN 6	[more]
AT3G42860.1	1.5e-07	30.47	zinc knuckle (CCHC-type) family protein	[more]

BLAST of CmoCh11G003290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659107077\|ref\|XP_008453510.1\|	7.7e-75	43.40	PREDICTED: uncharacterized protein LOC103494199 isoform X1 [Cucumis melo]	[more]
gi\|659107079\|ref\|XP_008453511.1\|	7.7e-75	43.40	PREDICTED: uncharacterized protein LOC103494199 isoform X2 [Cucumis melo]	[more]
gi\|659107081\|ref\|XP_008453512.1\|	7.7e-75	43.40	PREDICTED: zinc finger CCHC domain-containing protein 7 isoform X3 [Cucumis melo...	[more]
gi\|659107083\|ref\|XP_008453513.1\|	7.7e-75	43.40	PREDICTED: zinc finger CCHC domain-containing protein 7 isoform X4 [Cucumis melo...	[more]
gi\|778656547\|ref\|XP_011649266.1\|	5.0e-74	45.25	PREDICTED: zinc finger CCHC domain-containing protein 7 isoform X1 [Cucumis sati...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G003290.1	CmoCh11G003290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	GENE3D	G3DSA:4.10.60.10		coord: 322..364 score: 5.5E-10coord: 394..429 score: 4.0E-4coord: 206..246 score: 1.6
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 322..337 score: 5.1E-6coord: 209..225 score: 3.
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 231..247 score: 0.37coord: 209..225 score: 0.0019coord: 348..364 score: 0.29coord: 419..434 score: 27.0coord: 321..337 score: 8.3E-5coord: 395..408 score:
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 210..225 score: 9.85coord: 322..337 score: 10
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 203..247 score: 5.0E-10coord: 320..365 score: 3.2
None	No IPR available	PANTHER	PTHR23002	ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN	coord: 147..251 score: 3.5E-68coord: 301..371 score: 3.5E-68coord: 392..432 score: 3.5
None	No IPR available	PANTHER	PTHR23002:SF69	SUBFAMILY NOT NAMED	coord: 392..432 score: 3.5E-68coord: 301..371 score: 3.5E-68coord: 147..251 score: 3.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G003290	Cucsa.111740	Cucumber (Gy14) v1	cgycmoB0258
CmoCh11G003290	CmaCh10G003360	Cucurbita maxima (Rimu)	cmacmoB068
CmoCh11G003290	CmaCh11G003240	Cucurbita maxima (Rimu)	cmacmoB112
CmoCh11G003290	Cla018906	Watermelon (97103) v1	cmowmB128
CmoCh11G003290	Csa1G025270	Cucumber (Chinese Long) v2	cmocuB076
CmoCh11G003290	MELO3C017380	Melon (DHL92) v3.5.1	cmomeB109
CmoCh11G003290	ClCG06G014150	Watermelon (Charleston Gray)	cmowcgB119
CmoCh11G003290	CSPI01G04530	Wild cucumber (PI 183967)	cmocpiB079
CmoCh11G003290	Lsi06G012640	Bottle gourd (USVL1VR-Ls)	cmolsiB128
CmoCh11G003290	Cp4.1LG04g13540	Cucurbita pepo (Zucchini)	cmocpeB129
CmoCh11G003290	MELO3C017380.2	Melon (DHL92) v3.6.1	cmomedB117
CmoCh11G003290	CsaV3_1G004530	Cucumber (Chinese Long) v3	cmocucB0091
CmoCh11G003290	Cla97C06G123610	Watermelon (97103) v2	cmowmbB123
CmoCh11G003290	Bhi02G000119	Wax gourd	cmowgoB0146
CmoCh11G003290	CsGy1G004430	Cucumber (Gy14) v2	cgybcmoB028
CmoCh11G003290	Carg15186	Silver-seed gourd	carcmoB1064
CmoCh11G003290	Carg09089	Silver-seed gourd	carcmoB0808

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh11G003290	CmoCh10G003640	Cucurbita moschata (Rifu)	cmocmoB038

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G003290	Cucurbita pepo (Zucchini)	cmocpeB108