CmoCh10G012690 (gene) Cucurbita moschata (Rifu)

NameCmoCh10G012690
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionChloroplast envelope membrane protein
LocationCmo_Chr10 : 13078299 .. 13081207 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATTTTTGCCAAGGTGGATCTCTCTTTTATTTAATAAAAGCCTAGAATCTTGGGTTACTAATTGGTGGAATACTGGTCCATCCGAATTTTTTTTGAATGATATTCAAGAAAAGAGTATTATAAAAAAAGTTAGAGAATTAGAGGAACTCTTTCTCTTGGACGAAATGTTAAAGGAATACCCAGAAACACATCTACAAAAGCTTCGTATCGGAATCTACAAAGAAACGATCCAATTGATCAAGATGCACAATGAGGATCGTTTTCATACGATTTTGCACTTCTCGACACATCTACTAGATATTTGCCTTATAATAAAATATCAAATATGATATATATGTAAACTATAATTTATTATTAAATATCCTTAACAATGCACGTAAAGCTTGTTTAAGGTTATATAAATGTCTTCTTCAATTTTATACTCTTCACATTTTTTTTCACAACTTTGTGGTTGAACAAACACGGCTTAATTCTCCATACAAGAAAGCACTTTTCACATCAAGCTGATACACGCTCCAACTATTTTGAGTTGCTAAAGCAATTATGATTCAAATAGTATCCCACGTTGCAAAAAATGGAAGCACATCAGTATAGTCTATAATATGTTATTGTGCATACTCTTTTGCCACTAACCTAGCCTTATACTTGTCAACTTCGCCATTTTCGTTGAATTTAGTTTTGAAAACTCACTTGACTCCAATCTTCTTGATTTCCTTGGGCACATTTCCCAACTCTTCATTTTTTACTTTGAATAGTTTCTTCAAAGGTAGTCAGATCTGCACTTGAGGTTAATAGAACTAAATTGGTATGTTGAGCTTCTTCAGAAAATTCTCCTTGCTTACATAATCTTCCATCCATAACGGTGCTTCTCTGTTTCTCCCTTTTAGTGTACTTTATTCAGATGTTGAAGAATTTGCTTTAGATGATTCACTTGAAGATATACTTCTCCTTCTTCTACTACCACCTCCTCTTCAGGTTCTTCCTCACTTTGGTCATGTTTGCTTACTTCTGTATTACTATCTTTCCATTCGAGGGTATCAAGTCTAGCTTCTTCATTTAGCTTTTGATTTTTATATAATCAGATGCTACCTTAGGATAAGATTAAGATAACCCTTTATTTTTAAGTAATCATGTGGCTACCCTAAGATAAAACAAGCTCCTAGTAAGCATTTAGTTTTTAAGTAACCAGAAAGCTACCTTTAGATAAGCTTTAAAACAACTCTGGACAAGGATGCTACCTTCAAAACAACTCTGGACAAGGATGCTACCTTCAATCCAAATAAGCTTTAGGTAGCTTTGATTTTTAAGTAATCATATGCTACTCTAAGGATAAGGATCAAGAAGTAAGTTTTAGATAGCCTTTGATTTTGAAGTAACCAATATGATACTCTAAGGCTAAGGATCAAGTAAGTAATAGATAGCCTTTGATTTTCATGTAATCAATATGCTATCTCAAGGACATAAATCAAGTCAAGCATGTTTCACACAATCGGCCCTAAAGTAGCACTATATAAACTAAGGCCATAAAATATGAAGGTTGCTAAGCACCACGCAAGAAACAAGAACCAAAAATAAGAACAAGATTAGGAAAATGAATAAGTGTTCCTAACACATCTTAAGGTCACGATTAAGAACTTATGAGTAAGCTACTTATTGAGTTTTAGTACTCCCTCCATGTTTTTTTGGGTGACAAGAAGAAGCTGATCTAGGATAGATGCAGATTTGAAGCAAATGTCGTACAGGGCCGCACCATGTTTCAACTATTTAATGTTTTAAGTTGTTTTGTCTCCCTAAATGTATTCTACTTTAGTTTAAAAATCATTCACATTTTGTTTTTCAAGTATAATTATCTATTGATGAGTTTTTGTGAAAAGAGGAAGATTCCAAGAAATAATAATGATACGAAAGAAGTGGAGATGAAATAGGAAGCGAGGGGGAAACGGGGGTTGGTTGGTAAATGACATAAATGACCTTGGATGGGAAAAATATTACATCAATACTAATAAACGTTGATTTGACAACTCAATGATATAACGAAAATCACAATAAATTAATGGTACATTTAAAACCTAAGAAGAAGACAAAGGTGTGATAATTAAAAGTCTTTTCATAAATAATAATTTCAAAACTCAACAATATATTTAAAGATATGACCACACATTATGCCTTGAAAGTTCTCTCTTTATGTTGTATCATAAATAATAATCACATTATATTTGCAAACTTCCTCTTAAATCATCCATTATTCAAAACTTTAATTTAATCAAATATTATTTAGAAAGGAAATGACATTACACAAGTTGAAAGTCTCCCCTTCTACATATCATTTTAAATCACTATCAATTTGAAGTTTTGGGTGATAGAAAACAGTAATTGGAAAAGATGCGTCCATGTTGTTGTTGTAGCATGTCTGGGGTCAGAGGAGGCCACATAATTGTGCAAAAACAAAATGAAGTCTTCTCCACAAAACTCTCAACCATTTTCAGTGATTTTATGTGTTTAGAAAGAAGTTTGTTTTTGATCTAAGGTCTTCCATTGTTTGAACTCTTTGAATGCTTGAGAATCATCCCTTTGATGCTTTTCCAGCAACTCATTTGGTTTGGAATGTTGGTCTGAGGTAACCAAAGCATCCGGAAAGGTAACCAAACCTCTGGTTGGGCACTTGATTTTGGAGTTTCTTTACCTTTCACCTGTCGAAGAACAATGTCACTTACATTTAGAATGAGTGTTCCATAGTCTGTTAGATCCATTAATTCCTTTTCTTCTTCAGTCACAGAGGCTTGAATCTTGGAGGGATCTTGAATTGCGCCAGAATGGCCTTAATTTTGGCTACACATACCTAGAACTCACCCTTTCCATGTCGTCATACGTCGCAACAACCATTCTTCAATTTTCAACAAAATGA

mRNA sequence

ATGGTATTTTTGCCAAGGTGGATCTCTCTTTTATTTAATAAAAGCCTAGAATCTTGGGTTACTAATTGGTGGAATACTGGTCCATCCGAATTTTTTTTGAATGATATTCAAGAAAAGAGTATTATAAAAAAAGTTAGAGAATTAGAGGAACTCTTTCTCTTGGACGAAATCAACTCATTTGGTTTGGAATGTTGGTCTGAGGTAACCAAAGCATCCGGAAAGTCACAGAGGCTTGAATCTTGGAGGGATCTTGAATTGCGCCAGAATGGCCTTAATTTTGGCTACACATACCTAGAACTCACCCTTTCCATGTCGTCATACGTCGCAACAACCATTCTTCAATTTTCAACAAAATGA

Coding sequence (CDS)

ATGGTATTTTTGCCAAGGTGGATCTCTCTTTTATTTAATAAAAGCCTAGAATCTTGGGTTACTAATTGGTGGAATACTGGTCCATCCGAATTTTTTTTGAATGATATTCAAGAAAAGAGTATTATAAAAAAAGTTAGAGAATTAGAGGAACTCTTTCTCTTGGACGAAATCAACTCATTTGGTTTGGAATGTTGGTCTGAGGTAACCAAAGCATCCGGAAAGTCACAGAGGCTTGAATCTTGGAGGGATCTTGAATTGCGCCAGAATGGCCTTAATTTTGGCTACACATACCTAGAACTCACCCTTTCCATGTCGTCATACGTCGCAACAACCATTCTTCAATTTTCAACAAAATGA
BLAST of CmoCh10G012690 vs. Swiss-Prot
Match: CEMA_CUCSA (Chloroplast envelope membrane protein OS=Cucumis sativus GN=cemA PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-21
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 1

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WISL FNKSLESWVTNWWNTG SE FLNDIQEKSIIKKV ELEELFLLDE+
Sbjct: 16 IVFLPWWISLSFNKSLESWVTNWWNTGQSENFLNDIQEKSIIKKVLELEELFLLDEM 72

BLAST of CmoCh10G012690 vs. Swiss-Prot
Match: CEMA_PLAOC (Chloroplast envelope membrane protein OS=Platanus occidentalis GN=cemA PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.4e-19
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 1

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WISL FNKSLESW+TNWWNT  SE FLNDIQEK++++K  ELEELFLLDE+
Sbjct: 16 IVFLPWWISLSFNKSLESWITNWWNTRQSEIFLNDIQEKNVLEKFIELEELFLLDEM 72

BLAST of CmoCh10G012690 vs. Swiss-Prot
Match: CEMA_CITSI (Chloroplast envelope membrane protein OS=Citrus sinensis GN=cemA PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-18
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 1

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WI L FNKSLESWVTNWWNT  SE FLNDIQEK+I++K  ELEELFLLDE+
Sbjct: 19 VVFLPWWIPLSFNKSLESWVTNWWNTSQSETFLNDIQEKAILEKFIELEELFLLDEM 75

BLAST of CmoCh10G012690 vs. Swiss-Prot
Match: CEMA_VITVI (Chloroplast envelope membrane protein OS=Vitis vinifera GN=cemA PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-18
Identity = 45/57 (78.95%), Postives = 49/57 (85.96%), Query Frame = 1

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WISL  NKSLESWVTNWWNT  SE FLNDIQEKSI++K  ELEELFLLDE+
Sbjct: 16 IVFLPWWISLSLNKSLESWVTNWWNTRQSETFLNDIQEKSILEKFIELEELFLLDEM 72

BLAST of CmoCh10G012690 vs. Swiss-Prot
Match: CEMA_JASNU (Chloroplast envelope membrane protein OS=Jasminum nudiflorum GN=cemA PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.7e-18
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 1

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WISL F KS+ESWVTNWWNTG SE FLNDIQEKSI+++  ELEE+ LLDE+
Sbjct: 16 IVFLPWWISLSFTKSMESWVTNWWNTGQSEIFLNDIQEKSILERFIELEEILLLDEM 72

BLAST of CmoCh10G012690 vs. TrEMBL
Match: A0A0S2IE38_9ROSI (CemA OS=Cucurbita argyrosperma GN=cemA PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.3e-21
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 1

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WISLLFNKSLESWVTNWWNTG SE FLNDIQEKSIIKKVRELEELFLLDE+
Sbjct: 16 IVFLPWWISLLFNKSLESWVTNWWNTGQSEIFLNDIQEKSIIKKVRELEELFLLDEM 72

BLAST of CmoCh10G012690 vs. TrEMBL
Match: A0A0S2IGM0_CUCPE (CemA OS=Cucurbita pepo var. ozarkana GN=cemA PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.3e-21
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 1

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WISLLFNKSLESWVTNWWNTG SE FLNDIQEKSIIKKVRELEELFLLDE+
Sbjct: 16 IVFLPWWISLLFNKSLESWVTNWWNTGQSEIFLNDIQEKSIIKKVRELEELFLLDEM 72

BLAST of CmoCh10G012690 vs. TrEMBL
Match: A0A0S2IFA7_9ROSI (CemA OS=Cucurbita cordata GN=cemA PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.3e-21
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 1

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WISLLFNKSLESWVTNWWNTG SE FLNDIQEKSIIKKVRELEELFLLDE+
Sbjct: 16 IVFLPWWISLLFNKSLESWVTNWWNTGQSEIFLNDIQEKSIIKKVRELEELFLLDEM 72

BLAST of CmoCh10G012690 vs. TrEMBL
Match: A0A0S2IF82_9ROSI (CemA OS=Cucurbita lundelliana GN=cemA PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.3e-21
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 1

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WISLLFNKSLESWVTNWWNTG SE FLNDIQEKSIIKKVRELEELFLLDE+
Sbjct: 16 IVFLPWWISLLFNKSLESWVTNWWNTGQSEIFLNDIQEKSIIKKVRELEELFLLDEM 72

BLAST of CmoCh10G012690 vs. TrEMBL
Match: A0A0S2IDY0_9ROSI (CemA OS=Cucurbita argyrosperma var. palmeri GN=cemA PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.3e-21
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 1

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WISLLFNKSLESWVTNWWNTG SE FLNDIQEKSIIKKVRELEELFLLDE+
Sbjct: 16 IVFLPWWISLLFNKSLESWVTNWWNTGQSEIFLNDIQEKSIIKKVRELEELFLLDEM 72

BLAST of CmoCh10G012690 vs. TAIR10
Match: ATCG00530.1 (ATCG00530.1 CemA-like proton extrusion protein-related)

HSP 1 Score: 77.0 bits (188), Expect = 8.5e-15
Identity = 47/117 (40.17%), Postives = 63/117 (53.85%), Query Frame = 1

Query: 1   MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEINSF 60
           +VFLP  ISL  NKSL++W+TNWWNT   E FLNDIQEKS ++K  +LEELF LDE+   
Sbjct: 16  IVFLPWLISLCCNKSLKTWITNWWNTRQCETFLNDIQEKSFLEKFIQLEELFQLDEM--- 75

Query: 61  GLECWSEVTKASGKSQRLESWRDLELRQNGLNFGYTYLELTLSMSSYVATTILQFST 118
                            ++ + +  L+Q  L      ++     + Y   TIL FST
Sbjct: 76  -----------------IKEYPETNLQQFRLGIHKETIQFIKIHNEYNIHTILHFST 112

BLAST of CmoCh10G012690 vs. NCBI nr
Match: gi|952954755|gb|ALO22113.1| (cemA (plastid) [Cucurbita ficifolia])

HSP 1 Score: 109.8 bits (273), Expect = 3.4e-21
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 1

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WISLLFNKSLESWVTNWWNTG SE FLNDIQEKSIIKKVRELEELFLLDE+
Sbjct: 16 IVFLPWWISLLFNKSLESWVTNWWNTGQSEIFLNDIQEKSIIKKVRELEELFLLDEM 72

BLAST of CmoCh10G012690 vs. NCBI nr
Match: gi|952954401|gb|ALO21765.1| (cemA (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 109.8 bits (273), Expect = 3.4e-21
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 1

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WISLLFNKSLESWVTNWWNTG SE FLNDIQEKSIIKKVRELEELFLLDE+
Sbjct: 16 IVFLPWWISLLFNKSLESWVTNWWNTGQSEIFLNDIQEKSIIKKVRELEELFLLDEM 72

BLAST of CmoCh10G012690 vs. NCBI nr
Match: gi|952954800|gb|ALO22157.1| (cemA (plastid) [Cucurbita foetidissima])

HSP 1 Score: 109.0 bits (271), Expect = 5.7e-21
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WIS+LFNKSLESWVTNWWNTG SE FLNDIQEKSIIKKVRELEELFLLDE+
Sbjct: 16 IVFLPWWISILFNKSLESWVTNWWNTGQSEIFLNDIQEKSIIKKVRELEELFLLDEM 72

BLAST of CmoCh10G012690 vs. NCBI nr
Match: gi|346578203|ref|YP_004841795.1| (chloroplast envelope membrane protein [Cucumis melo subsp. melo])

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 1

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WISL FNKSLESWVTNWWNTG SE FLNDIQEKSIIKKV ELEELFLLDE+
Sbjct: 16 IVFLPWWISLSFNKSLESWVTNWWNTGQSEIFLNDIQEKSIIKKVLELEELFLLDEM 72

BLAST of CmoCh10G012690 vs. NCBI nr
Match: gi|595645240|gb|AHM88703.1| (chloroplast envelope membrane protein (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-19
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 1

Query: 1  MVFLPRWISLLFNKSLESWVTNWWNTGPSEFFLNDIQEKSIIKKVRELEELFLLDEI 58
          +VFLP WISL FNKSLESWVTNWWNTG SE FLNDIQEKSIIKKV ELEELFLLDE+
Sbjct: 16 IVFLPWWISLSFNKSLESWVTNWWNTGQSEIFLNDIQEKSIIKKVIELEELFLLDEM 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CEMA_CUCSA1.5e-2187.72Chloroplast envelope membrane protein OS=Cucumis sativus GN=cemA PE=3 SV=1[more]
CEMA_PLAOC5.4e-1975.44Chloroplast envelope membrane protein OS=Platanus occidentalis GN=cemA PE=3 SV=1[more]
CEMA_CITSI1.2e-1877.19Chloroplast envelope membrane protein OS=Citrus sinensis GN=cemA PE=3 SV=1[more]
CEMA_VITVI1.2e-1878.95Chloroplast envelope membrane protein OS=Vitis vinifera GN=cemA PE=3 SV=1[more]
CEMA_JASNU2.7e-1873.68Chloroplast envelope membrane protein OS=Jasminum nudiflorum GN=cemA PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0S2IE38_9ROSI2.3e-2191.23CemA OS=Cucurbita argyrosperma GN=cemA PE=3 SV=1[more]
A0A0S2IGM0_CUCPE2.3e-2191.23CemA OS=Cucurbita pepo var. ozarkana GN=cemA PE=3 SV=1[more]
A0A0S2IFA7_9ROSI2.3e-2191.23CemA OS=Cucurbita cordata GN=cemA PE=3 SV=1[more]
A0A0S2IF82_9ROSI2.3e-2191.23CemA OS=Cucurbita lundelliana GN=cemA PE=3 SV=1[more]
A0A0S2IDY0_9ROSI2.3e-2191.23CemA OS=Cucurbita argyrosperma var. palmeri GN=cemA PE=3 SV=1[more]
Match NameE-valueIdentityDescription
ATCG00530.18.5e-1540.17ATCG00530.1 CemA-like proton extrusion protein-related[more]
Match NameE-valueIdentityDescription
gi|952954755|gb|ALO22113.1|3.4e-2191.23cemA (plastid) [Cucurbita ficifolia][more]
gi|952954401|gb|ALO21765.1|3.4e-2191.23cemA (plastid) [Cucurbita argyrosperma][more]
gi|952954800|gb|ALO22157.1|5.7e-2189.47cemA (plastid) [Cucurbita foetidissima][more]
gi|346578203|ref|YP_004841795.1|1.1e-1987.72chloroplast envelope membrane protein [Cucumis melo subsp. melo][more]
gi|595645240|gb|AHM88703.1|1.4e-1987.72chloroplast envelope membrane protein (chloroplast) [Lagenaria siceraria][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902600 hydrogen ion transmembrane transport
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0015078 hydrogen ion transmembrane transporter activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G012690.1CmoCh10G012690.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None