CmoCh10G010320 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh10G010320
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSerrate RNA effector molecule-like protein
LocationCmo_Chr10 : 5427496 .. 5431237 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGATCAGTGAACGAAACTCCGGACTTTCTCGACTTCAATTCTCCGACGCTTTGGGTTCATTCTAGGGTTTCGTTTCTTCTTCTTCTTCTTCTTCCAGTGCTGTGTAAAATCATGGCCGAGGTTATGAACATGGCCGCCGCCGATACCGCCGACGAGTCGTTGGACCGCCGTCGTGATCAACAAGAGAAATCGTCTGAGGAGCAACCTCATTCCTCGCCTCCGCCGCAGCCGGCTGCTGCTGCTGCTCCTCCTCCTCCTTCCAGAAGAAGGGATAGAGATGAGAGAGATAGGAGAGACGACCGGGATGTTGATCGTCCTCCGAACCGACGCAACGATAATTACGATCGTAATCGCTCTCCGCCTACGATGCCTCCGAGGGATAGGGATAGAGACAGAGATAGGGATTATAAACGGCGGAGCAGTCTTAGTCCCCCACCGCCTTACAGGGATCGTAGACACTCGCCTCCTAGACGGTCTCCTCCGCCACCTTTCAAGCGTTCCCGGAGAGATGATGGCGGTGGGTATGATGGAAGAAAGGGAAGCCCTAGAGGAGGTTTCGGGCCTGGCGATAGGAGGTGAGTGGGTGGGAAACTGTTTTGATTTGTCGAGCTTAATTCTTGTTCTAGTGATTTGGAGATGAATTCTGTGCATTTGAAATTTATATGGCATTCACAGATTAGAGTCAATTTTCATCTAAATGAAAAAAAGAAATCTTCTTAATTGTGGACTATGGAATTTTTATTCTTCCATAGCTAGGTCCTTCAAACTTGGCATTGCCACTAAATACTCCAAAGGTTATATGTTTCAACCATTAACTGATGCTGGAAGCCATTTTCAACATAAAGTTTGAACTCAACAAGTACCTTACATACGAGACGAATAATGTTTTACACACAGCTTTTTAGATAAAATGGTTCTTCCCATTTCATTCGAGATAAGATCGTTCATCCCATCTTGATTTATAATGGTTCAACCCATTTAATATACAAATGTAGTTATGAGATGAACCATTTCGTAGAGGAATAATGTTCATCCCATATTATTTTTTTGTTCTGCTTGTTGGACAAAGTTGTTGTAGGTCTTCTATTTTTTCTCTTAATGGTCCCAAAAATCAGACATGTTTCTCAATGCCCATCATCTCTTCACCCCCTAACCCCGTCCTAAATGTAAGAGCGTGATTTTTGTCGTAATGGGCTTAGTTGTACTTTCTATTACAATGGACACCTCTGCTTCACTTGTATGATTCTCCTTAGTCATTTTTCATCCTCTATTTGTACTCCCTTTTTTTTTAAGCGACTAATGATGCTTTGGTGGGCGATAGTGTTTCTGTTTTATGTTTTGTTGACTAATGCCTAGGTTGTCATTTAAGTATTGATATATGTATTTATCTATCTATTTTATCTTATTCCAAGGTTTGGTTATGATTATGGTGGGGGATATGAGCGCGAACTGCGTGGCCGGCCTGGATATGTTGATGAAAGGTCTCTTGGTCGGTACATTGGTCGTTCATCTGGTGGCTATCAAGGTGATGTTTCTGTTACCTGATAAAATAAACTCAGCCTTATCATGATTAGAGTTTAGACCTATACATTCTTAGTCTAGTTCATTTTTTGAGATGATTGTTATAGAACATGAAGTACTCAAATTTCAATTAGGCCAATGGGAGATTTTGAGAATTTCACCTTCTTTGTTGCATATGCAAAAATATTCATTGGTTTGGAAAATGAGGTATTGTACAGTGTTTGTACCCATGTCTTTGGCCAATGTCAGACCTTCTAGCCAATTTATAGCCAATTTATAGAGAGGAGTTTTCCTCATTTTCTTTTCTGGTGCAGAATTGCGTGACTCTAATTTAATTATTATAGAGAGATTATTGAATGCCTTAGTCTTGTTCCCTCTTGTCTAAATGTGACATCATCCTTATGTCCCTTATGGTATATCACGTTTAGAGCAATTAGTAATAGTGTACTCCCGGAATAACTTATTATTTCTTATTGCATTGCCGTACGATAATTTTCATGATTTTCAGTTCTTATTGCTTCCTATGTTTGTGAGCCAAACTGTACATAAGGGATCTTTAGTTTATTCAGATCTATGAAGTTCAACATAAATCTGGAAGTTCACATGTTGAGACTTAAGGTTTAAAAGGGTAGTAAATTTTCTTTTGTTGAACGGGAGACACAAGAAATTTAAAATTTAGATATGTGGTCTTTAAACTAGTTTAAAGGTAATATCCGCATAGTCAAATCAAACTGGTGTACAAAAATGCATAAGTTTCGTTAAGTAGCATTTAAAATAATAATATAATGACTAGAAGAAAGACGACTTGATCTAAAGGGCACCCCTACAGCCGCACGGCTCCACACGCTCTCGCCATCAACATTGGTCTACACTCATTTAAAAAAAAATATAATACCATGGAATGAGTATAAAAATACTCAGTAAGCAACTTATTTGTAGGATCTTGTCAGACTTAATTCTATACACAGAAACTTAGGCCATGTGCTCATATCTGTCCCTAGCGATAGCCAAATTTTGGCTTAACGTCTGGACCAAACTTTGTAGGTCACTATGTAACTAACCCTCAACATACCTCTTTAAGGAGTACTCAATCCCTCTTAGGTTTGCAACCTAGGGGTTTTTTTTGTTTTCTCTTCGCTCTAGGTTTCACGTATGTCTAGATCCTTCATCAGTCTTGCGCAAAGTGCACCTCGAATCTCTGGCCCATGGAAGGGCCCTAGGGTAACACTCATAAGTCTGGAGGAGCCCTTTTTGCTCTAAACAATACTCGTACTCCATACATATCTACCTACTAAGCTCTAATCTGTGGATTTTCCCTAGTGGTGTCGGGCAACATTTACCTGTTTCTAGGATCAGTAAACTACCTATCACTATGCCTTTTCCAGGCTGGAACAGTAAACTACCTGCTCTTGTACCTCATCAGATTAAAATAGTAAAACTGCATGTCTTAGGAATAGTAACTACATGTTACTTTGGCTTTTCAGGCTAGAACAATAAAACTACTTGTCACTATGTCACTCAGGCTGGAATAGTAAAAAGGTCATGGCACTGCCCACTAGGCACCACCAATATGAACAGTAAAAACTACCTACTCATGTACATTCTTCAGGTTAGAATGGTAGAAACTTGTTCCATATGGTTACTTACTGATTGTTAGACTTCCCAAGCTTGTTTCATGTCTTGGAGGATATTCCTAATTTCCTCAATATGCCTTAAATTAAATTGAATAACACTGGTGAAATTAGCTAGATTCAAATTTGTTAAAAAAAAAAGAAAGGAATGTAGGTTGAAAAACTAACCGTTGATTGTACGGCCATCTTCTCCAACTTGCACATATTCCATTCTGCTTTCCTTCTCTTTTTTTCTTTTAGAAAAAATGTTTTATTTATTTTCTTAAAATTTCAGGCGTTATTTGTGCTTTTGAATTAGAACAGCAGAATCTTCTTGCTTCCAAGCTCTCAATTTTGCGTTTGTTGTATGGATAATATTACCAGTTTCCCTTTTTGCATCTCTGGTAGTAGTTAATGTTTTGTTTGAATCAGTGCTTACATCTGGATGAACAATTTACGGATAAGGTATTCGCAAACGATTTTCTTATTTCCTTAAGCTGTGTTCTGCAGATTGGGATCCTAGTCGTGGTGGGCATGGTGATCCACTCAATGCAGGAGCTGGCCAAAGGTTAGCATTCAGTCACAACTCACTCATGGTTTCTGTTACATAA

mRNA sequence

AGATCAGTGAACGAAACTCCGGACTTTCTCGACTTCAATTCTCCGACGCTTTGGGTTCATTCTAGGGTTTCGTTTCTTCTTCTTCTTCTTCTTCCAGTGCTGTGTAAAATCATGGCCGAGGTTATGAACATGGCCGCCGCCGATACCGCCGACGAGTCGTTGGACCGCCGTCGTGATCAACAAGAGAAATCGTCTGAGGAGCAACCTCATTCCTCGCCTCCGCCGCAGCCGGCTGCTGCTGCTGCTCCTCCTCCTCCTTCCAGAAGAAGGGATAGAGATGAGAGAGATAGGAGAGACGACCGGGATGTTGATCGTCCTCCGAACCGACGCAACGATAATTACGATCGTAATCGCTCTCCGCCTACGATGCCTCCGAGGGATAGGGATAGAGACAGAGATAGGGATTATAAACGGCGGAGCAGTCTTAGTCCCCCACCGCCTTACAGGGATCGTAGACACTCGCCTCCTAGACGGTCTCCTCCGCCACCTTTCAAGCGTTCCCGGAGAGATGATGGCGGTGGGTATGATGGAAGAAAGGGAAGCCCTAGAGGAGGTTTCGGGCCTGGCGATAGGAGGTTTGGTTATGATTATGGTGGGGGATATGAGCGCGAACTGCGTGGCCGGCCTGGATATGTTGATGAAAGGTCTCTTGGTCGGTACATTGGTCGTTCATCTGGTGGCTATCAAGATTGGGATCCTAGTCGTGGTGGGCATGGTGATCCACTCAATGCAGGAGCTGGCCAAAGGTTAGCATTCAGTCACAACTCACTCATGGTTTCTGTTACATAA

Coding sequence (CDS)

ATGGCCGAGGTTATGAACATGGCCGCCGCCGATACCGCCGACGAGTCGTTGGACCGCCGTCGTGATCAACAAGAGAAATCGTCTGAGGAGCAACCTCATTCCTCGCCTCCGCCGCAGCCGGCTGCTGCTGCTGCTCCTCCTCCTCCTTCCAGAAGAAGGGATAGAGATGAGAGAGATAGGAGAGACGACCGGGATGTTGATCGTCCTCCGAACCGACGCAACGATAATTACGATCGTAATCGCTCTCCGCCTACGATGCCTCCGAGGGATAGGGATAGAGACAGAGATAGGGATTATAAACGGCGGAGCAGTCTTAGTCCCCCACCGCCTTACAGGGATCGTAGACACTCGCCTCCTAGACGGTCTCCTCCGCCACCTTTCAAGCGTTCCCGGAGAGATGATGGCGGTGGGTATGATGGAAGAAAGGGAAGCCCTAGAGGAGGTTTCGGGCCTGGCGATAGGAGGTTTGGTTATGATTATGGTGGGGGATATGAGCGCGAACTGCGTGGCCGGCCTGGATATGTTGATGAAAGGTCTCTTGGTCGGTACATTGGTCGTTCATCTGGTGGCTATCAAGATTGGGATCCTAGTCGTGGTGGGCATGGTGATCCACTCAATGCAGGAGCTGGCCAAAGGTTAGCATTCAGTCACAACTCACTCATGGTTTCTGTTACATAA
Homology
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BLAST of CmoCh10G010320 vs. Swiss-Prot
Match: SRRT_ARATH (Serrate RNA effector molecule OS=Arabidopsis thaliana GN=SE PE=1 SV=2)

HSP 1 Score: 168.7 bits (426), Expect = 7.3e-41
Identity = 114/208 (54.81%), Postives = 138/208 (66.35%), Query Frame = 1 

Query: 13  ADESLDRRRDQQEKSSEEQPHSSPPPQPAAAAAPPPPSR--------RRDRDERDRRDDR 72
           AD +L        +  E+   SSPPP P +++ P             RR+RD R+RRD+R
Sbjct: 2   ADVNLPPSDSVDNRLPEKSTSSSPPPPPPSSSLPQQEQEQDQQQLPLRRERDSRERRDER 61

Query: 73  DVDRPPNRRNDNYDRNRSPPTMPPRDRDRDRDRDYKRRSSLSPPPPYRDRRHSPPRRSPP 132
           D++RPP  R +   R+RSP   PPR       RDYKRR SLSPPPPYRDRRHSPP+R  P
Sbjct: 62  DIERPPPNRRE---RDRSP-LPPPR-------RDYKRRPSLSPPPPYRDRRHSPPQRRSP 121

Query: 133 PPFKRSRRDDGGGYDGRKGSPRGGFGPGDRRFGYDYGGGYERELRGRPGYVDERSLGRYI 192
           P  KR RRDD G YDGR+GSPRGG+GP DRRFGYD+GGGY+RE+ GRPGY DER  GR++
Sbjct: 122 PQ-KRYRRDDNG-YDGRRGSPRGGYGPPDRRFGYDHGGGYDREMGGRPGYGDERPHGRFM 181

Query: 193 GRSSGGYQDWDPSRGGHGDPLNAGAGQR 213
           GR    YQDW+  RGG+GD  N+G  QR
Sbjct: 182 GR----YQDWEGGRGGYGDASNSGNPQR 192

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BLAST of CmoCh10G010320 vs. TrEMBL
Match: W9QUS4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022506 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 2.0e-61
Identity = 152/217 (70.05%), Postives = 169/217 (77.88%), Query Frame = 1 

Query: 1   MAEVMNMAAADTADESLDRRR-DQQEKSSEEQPHSSPPPQPAAAAAPPPPSRRRDRDERD 60
           MAEVMNM       +SLDRRR D++EKS+E+ P SS PP P     PPPP+RRRDRDERD
Sbjct: 1   MAEVMNMPV-----DSLDRRRGDRKEKSAEDPPQSSSPPPP-----PPPPARRRDRDERD 60

Query: 61  RRDDRDVDRPPNRRNDNYDR-NRSPPTMPPRDRDRDRDRDYKRRSSLS-PPPPYRDRRHS 120
           RRDDRD DRPP+RR D +DR NRSPP  PP  R+R+RDRDYKRRSSLS PPPPYRDRRHS
Sbjct: 61  RRDDRDADRPPSRRGDYHDRGNRSPP--PPPLRERERDRDYKRRSSLSPPPPPYRDRRHS 120

Query: 121 PPRRSPPPPFKRSRRDDGGGYDGRKGSPRGGFGPGDRRFGYDYGGGYERELRGRPGYVDE 180
           PPRRSPPPP+KRSRRDD GGYDGR+ SPRGGFGPGDRRFGYDY GGY+RE+ GRPGY D+
Sbjct: 121 PPRRSPPPPYKRSRRDD-GGYDGRR-SPRGGFGPGDRRFGYDYAGGYDREMGGRPGYADD 180

Query: 181 RSLGRYIGRSSG--GYQDWDPSRGGHGDPLNAGAGQR 213
           R  GRY+GRSSG  G  +WD  R   GD    G  QR
Sbjct: 181 RPHGRYVGRSSGAFGPPEWDSGRSAFGDSFGVGTNQR 203

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BLAST of CmoCh10G010320 vs. TrEMBL
Match: M5WIK1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022633mg PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.6e-58
Identity = 140/191 (73.30%), Postives = 156/191 (81.68%), Query Frame = 1 

Query: 1   MAEVMNMAAADTADESLDRRRDQQEKSSEEQPHSSPPPQPAAAAAPPPPSRRRDRDERDR 60
           MAE+MNM       ESLDRRRD++EKSSE+ P SSP  +      PPPP+RRRDRDE   
Sbjct: 1   MAEIMNMPV-----ESLDRRRDRKEKSSED-PQSSPQQEAPPPPPPPPPTRRRDRDEG-- 60

Query: 61  RDDRDVDRPPNRRNDNYDRNRSPPTMPPRDRDRDRDRDYKRRSSLSPPPPYRDRRHSPPR 120
           RDDRD+DRPP+RR D YDRNRSPP  P R+R+RDR+R YKRRSSLSPPPPYRDRRHSP R
Sbjct: 61  RDDRDLDRPPSRRPDYYDRNRSPPPPPIRERERDRERGYKRRSSLSPPPPYRDRRHSPTR 120

Query: 121 RSPPPPFKRSRRDDGGGYDGRKGSPRGGFGPGDRRFGYDYGGGYERELRGRPGYVDERSL 180
           RSPPPPFKRSRR+D GGY+GR+GSPRGGFGPGDRRFGYDY  GY+RE+ GRPGY DER  
Sbjct: 121 RSPPPPFKRSRRED-GGYEGRRGSPRGGFGPGDRRFGYDY-TGYDREMGGRPGYADERPH 180

Query: 181 GRYIGRSSGGY 192
           GRY GRSSGGY
Sbjct: 181 GRYAGRSSGGY 181

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BLAST of CmoCh10G010320 vs. TrEMBL
Match: A0A067FT79_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003865mg PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 5.4e-51
Identity = 143/241 (59.34%), Postives = 164/241 (68.05%), Query Frame = 1 

Query: 1   MAEVMNMAAADTADESLDRRRDQQEKSSEEQ--------------------PHSSPPPQP 60
           MA+VMNMA      +SLDRRR  +  + ++                     P SSPPP  
Sbjct: 1   MAQVMNMAV-----DSLDRRRKDKSSAGDDNGNGNGNDNEDNIDNNNNNSAPQSSPPP-- 60

Query: 61  AAAAAPPPPSRRRDRDERDRRDDRDVDR-PPNRRN-DNYDRNRSPPTMPPRDRDRDRDRD 120
                PPPP+RRR+RD R+RRDDRD+DR PPNRR  D YDRNRSPP   P    R+RDRD
Sbjct: 61  -----PPPPARRRERDSRERRDDRDLDRPPPNRRGPDYYDRNRSPPPPMP----RERDRD 120

Query: 121 YKRRSSLSPPP---PYRDRRHSPPRRSPPPPFKRSRRDDGGGYDGRKGSPRGGFGPGDRR 180
           YKRRS++SPPP   PYRDRRHSPP R   PP+KRSRRDD GGY+ R+GSPRGGFGP DRR
Sbjct: 121 YKRRSTVSPPPPPLPYRDRRHSPPPRR-SPPYKRSRRDD-GGYEPRRGSPRGGFGP-DRR 180

Query: 181 FGYDYGGGYERELRGRPGYVDERSLGRYIGRSSGGYQ----DWDPSRGGHGDPLNAGAGQ 213
           FGYDY GGYERE+ GRPGY DER  GR+ GRSSGGYQ    +WD SRGG+GD  N G+ Q
Sbjct: 181 FGYDYTGGYEREMGGRPGYGDERPHGRFAGRSSGGYQSGPSEWDSSRGGYGDASNTGSTQ 222

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BLAST of CmoCh10G010320 vs. TrEMBL
Match: A0A067FSG4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003865mg PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 5.4e-51
Identity = 143/241 (59.34%), Postives = 164/241 (68.05%), Query Frame = 1 

Query: 1   MAEVMNMAAADTADESLDRRRDQQEKSSEEQ--------------------PHSSPPPQP 60
           MA+VMNMA      +SLDRRR  +  + ++                     P SSPPP  
Sbjct: 1   MAQVMNMAV-----DSLDRRRKDKSSAGDDNGNGNGNDNEDNIDNNNNNSAPQSSPPP-- 60

Query: 61  AAAAAPPPPSRRRDRDERDRRDDRDVDR-PPNRRN-DNYDRNRSPPTMPPRDRDRDRDRD 120
                PPPP+RRR+RD R+RRDDRD+DR PPNRR  D YDRNRSPP   P    R+RDRD
Sbjct: 61  -----PPPPARRRERDSRERRDDRDLDRPPPNRRGPDYYDRNRSPPPPMP----RERDRD 120

Query: 121 YKRRSSLSPPP---PYRDRRHSPPRRSPPPPFKRSRRDDGGGYDGRKGSPRGGFGPGDRR 180
           YKRRS++SPPP   PYRDRRHSPP R   PP+KRSRRDD GGY+ R+GSPRGGFGP DRR
Sbjct: 121 YKRRSTVSPPPPPLPYRDRRHSPPPRR-SPPYKRSRRDD-GGYEPRRGSPRGGFGP-DRR 180

Query: 181 FGYDYGGGYERELRGRPGYVDERSLGRYIGRSSGGYQ----DWDPSRGGHGDPLNAGAGQ 213
           FGYDY GGYERE+ GRPGY DER  GR+ GRSSGGYQ    +WD SRGG+GD  N G+ Q
Sbjct: 181 FGYDYTGGYEREMGGRPGYGDERPHGRFAGRSSGGYQSGPSEWDSSRGGYGDASNTGSTQ 222

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BLAST of CmoCh10G010320 vs. TrEMBL
Match: A0A067FGB5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003865mg PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 5.4e-51
Identity = 143/241 (59.34%), Postives = 164/241 (68.05%), Query Frame = 1 

Query: 1   MAEVMNMAAADTADESLDRRRDQQEKSSEEQ--------------------PHSSPPPQP 60
           MA+VMNMA      +SLDRRR  +  + ++                     P SSPPP  
Sbjct: 1   MAQVMNMAV-----DSLDRRRKDKSSAGDDNGNGNGNDNEDNIDNNNNNSAPQSSPPP-- 60

Query: 61  AAAAAPPPPSRRRDRDERDRRDDRDVDR-PPNRRN-DNYDRNRSPPTMPPRDRDRDRDRD 120
                PPPP+RRR+RD R+RRDDRD+DR PPNRR  D YDRNRSPP   P    R+RDRD
Sbjct: 61  -----PPPPARRRERDSRERRDDRDLDRPPPNRRGPDYYDRNRSPPPPMP----RERDRD 120

Query: 121 YKRRSSLSPPP---PYRDRRHSPPRRSPPPPFKRSRRDDGGGYDGRKGSPRGGFGPGDRR 180
           YKRRS++SPPP   PYRDRRHSPP R   PP+KRSRRDD GGY+ R+GSPRGGFGP DRR
Sbjct: 121 YKRRSTVSPPPPPLPYRDRRHSPPPRR-SPPYKRSRRDD-GGYEPRRGSPRGGFGP-DRR 180

Query: 181 FGYDYGGGYERELRGRPGYVDERSLGRYIGRSSGGYQ----DWDPSRGGHGDPLNAGAGQ 213
           FGYDY GGYERE+ GRPGY DER  GR+ GRSSGGYQ    +WD SRGG+GD  N G+ Q
Sbjct: 181 FGYDYTGGYEREMGGRPGYGDERPHGRFAGRSSGGYQSGPSEWDSSRGGYGDASNTGSTQ 222

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BLAST of CmoCh10G010320 vs. TAIR10
Match: AT2G27100.1 (AT2G27100.1 C2H2 zinc-finger protein SERRATE (SE))

HSP 1 Score: 168.7 bits (426), Expect = 4.1e-42
Identity = 114/208 (54.81%), Postives = 138/208 (66.35%), Query Frame = 1 

Query: 13  ADESLDRRRDQQEKSSEEQPHSSPPPQPAAAAAPPPPSR--------RRDRDERDRRDDR 72
           AD +L        +  E+   SSPPP P +++ P             RR+RD R+RRD+R
Sbjct: 2   ADVNLPPSDSVDNRLPEKSTSSSPPPPPPSSSLPQQEQEQDQQQLPLRRERDSRERRDER 61

Query: 73  DVDRPPNRRNDNYDRNRSPPTMPPRDRDRDRDRDYKRRSSLSPPPPYRDRRHSPPRRSPP 132
           D++RPP  R +   R+RSP   PPR       RDYKRR SLSPPPPYRDRRHSPP+R  P
Sbjct: 62  DIERPPPNRRE---RDRSP-LPPPR-------RDYKRRPSLSPPPPYRDRRHSPPQRRSP 121

Query: 133 PPFKRSRRDDGGGYDGRKGSPRGGFGPGDRRFGYDYGGGYERELRGRPGYVDERSLGRYI 192
           P  KR RRDD G YDGR+GSPRGG+GP DRRFGYD+GGGY+RE+ GRPGY DER  GR++
Sbjct: 122 PQ-KRYRRDDNG-YDGRRGSPRGGYGPPDRRFGYDHGGGYDREMGGRPGYGDERPHGRFM 181

Query: 193 GRSSGGYQDWDPSRGGHGDPLNAGAGQR 213
           GR    YQDW+  RGG+GD  N+G  QR
Sbjct: 182 GR----YQDWEGGRGGYGDASNSGNPQR 192

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BLAST of CmoCh10G010320 vs. NCBI nr
Match: gi|659100411|ref|XP_008451085.1| (PREDICTED: serrate RNA effector molecule [Cucumis melo])

HSP 1 Score: 348.6 bits (893), Expect = 8.2e-93
Identity = 188/212 (88.68%), Postives = 197/212 (92.92%), Query Frame = 1 

Query: 1   MAEVMNMAAADTADESLDRRRDQQEKSSEEQPHSSPPPQPAAAAAPPPPSRRRDRDERDR 60
           MAEVMNMAAAD   ESLDRRRD+Q+KSS+EQPHSSPP  P A  APPPPSRRRDRDERDR
Sbjct: 1   MAEVMNMAAAD---ESLDRRRDRQDKSSDEQPHSSPPSHPPA--APPPPSRRRDRDERDR 60

Query: 61  RDDRDVDRPPNRRNDNYDRNRSPPTMPPRDRDRDRDRDYKRRSSLSPPPPYRDRRHSPPR 120
           RDDRD DRPPNRR DNYDRNRSPP++PPRDRDRDRDRDYKRRSSLSPPPPYRDRRHSPPR
Sbjct: 61  RDDRDFDRPPNRRGDNYDRNRSPPSLPPRDRDRDRDRDYKRRSSLSPPPPYRDRRHSPPR 120

Query: 121 RSPPPPFKRSRRDDGGGYDGRKGSPRGGFGPGDRRFGYDYGGGYERELRGRPGYVDERSL 180
           RSPPPP+KRSRRDD GGYDGRKGSPRGGFGPGDRRFGYDYGGGYERE+RGRPGYVD+R L
Sbjct: 121 RSPPPPYKRSRRDD-GGYDGRKGSPRGGFGPGDRRFGYDYGGGYEREMRGRPGYVDDRPL 180

Query: 181 GRYIGRSSGGYQDWDPSRGGHGDPLNAGAGQR 213
           GRYIGRSSGGYQDWD +RGGHGD LNAG GQR
Sbjct: 181 GRYIGRSSGGYQDWDSNRGGHGDALNAGGGQR 206

[Close]
BLAST of CmoCh10G010320 vs. NCBI nr
Match: gi|449452662|ref|XP_004144078.1| (PREDICTED: serrate RNA effector molecule [Cucumis sativus])

HSP 1 Score: 342.4 bits (877), Expect = 5.9e-91
Identity = 185/212 (87.26%), Postives = 195/212 (91.98%), Query Frame = 1 

Query: 1   MAEVMNMAAADTADESLDRRRDQQEKSSEEQPHSSPPPQPAAAAAPPPPSRRRDRDERDR 60
           MAEVMNMAAAD   ESLDRRRD+QEKSS+EQPHSSP   P A  APPPPSRRRDRDERDR
Sbjct: 1   MAEVMNMAAAD---ESLDRRRDRQEKSSDEQPHSSPQSHPPA--APPPPSRRRDRDERDR 60

Query: 61  RDDRDVDRPPNRRNDNYDRNRSPPTMPPRDRDRDRDRDYKRRSSLSPPPPYRDRRHSPPR 120
           RDDRD DRPPNRR DNYDRNRSPP++PPRDRDRDRDRDYKRRSSLSPPPPYRDRRHSPPR
Sbjct: 61  RDDRDFDRPPNRRGDNYDRNRSPPSLPPRDRDRDRDRDYKRRSSLSPPPPYRDRRHSPPR 120

Query: 121 RSPPPPFKRSRRDDGGGYDGRKGSPRGGFGPGDRRFGYDYGGGYERELRGRPGYVDERSL 180
           RSPPPP+KRSRRDD GGYDGRKGSPRGGFGPGDRRFGYDYGGGYERE+RGRPGYVDER +
Sbjct: 121 RSPPPPYKRSRRDD-GGYDGRKGSPRGGFGPGDRRFGYDYGGGYEREMRGRPGYVDERPM 180

Query: 181 GRYIGRSSGGYQDWDPSRGGHGDPLNAGAGQR 213
           GR++GRSSGGYQDWD +RGGHGD LN G GQR
Sbjct: 181 GRFMGRSSGGYQDWDSNRGGHGDALNPGGGQR 206

[Close]
BLAST of CmoCh10G010320 vs. NCBI nr
Match: gi|645218527|ref|XP_008231073.1| (PREDICTED: serrate RNA effector molecule [Prunus mume])

HSP 1 Score: 244.2 bits (622), Expect = 2.2e-61
Identity = 149/214 (69.63%), Postives = 166/214 (77.57%), Query Frame = 1 

Query: 1   MAEVMNMAAADTADESLDRRRDQQEKSSEEQPHSSPPPQPAAAAAPPPPSRRRDRDERDR 60
           MAE+MNM       ESLDRRRD++EKSSE+ P SSP  +      PPPP+RRRDRDE   
Sbjct: 1   MAEIMNMPV-----ESLDRRRDRKEKSSED-PQSSPQQEAPPPPPPPPPTRRRDRDEG-- 60

Query: 61  RDDRDVDRPPNRRNDNYDRNRSPPTMPPRDRDRDRDRDYKRRSSLSPPPPYRDRRHSPPR 120
           RDDRD+DRPP+RR D YDRNRSPP  P R+R+RDR+R YKRRSSLSPPPPYRDRRHSP R
Sbjct: 61  RDDRDLDRPPSRRPDYYDRNRSPPPPPIRERERDRERGYKRRSSLSPPPPYRDRRHSPTR 120

Query: 121 RSPPPPFKRSRRDDGGGYDGRKGSPRGGFGPGDRRFGYDYGGGYERELRGRPGYVDERSL 180
           RSPPP FKRSRR+DGG  +GR+GSPRGGFGPGDRRFGYDY  GY+RE+ GRPGY DER  
Sbjct: 121 RSPPPQFKRSRREDGGN-EGRRGSPRGGFGPGDRRFGYDY-TGYDREMGGRPGYADERPH 180

Query: 181 GRYIGRSSGGY--QDWDPSRGGHGDPLNAGAGQR 213
           GRY GRSSGGY   DWD  RGG GD  + G  QR
Sbjct: 181 GRYAGRSSGGYGPPDWDSGRGGFGDASSTGTTQR 204

[Close]
BLAST of CmoCh10G010320 vs. NCBI nr
Match: gi|703089410|ref|XP_010093794.1| (hypothetical protein L484_022506 [Morus notabilis])

HSP 1 Score: 243.8 bits (621), Expect = 2.8e-61
Identity = 152/217 (70.05%), Postives = 169/217 (77.88%), Query Frame = 1 

Query: 1   MAEVMNMAAADTADESLDRRR-DQQEKSSEEQPHSSPPPQPAAAAAPPPPSRRRDRDERD 60
           MAEVMNM       +SLDRRR D++EKS+E+ P SS PP P     PPPP+RRRDRDERD
Sbjct: 1   MAEVMNMPV-----DSLDRRRGDRKEKSAEDPPQSSSPPPP-----PPPPARRRDRDERD 60

Query: 61  RRDDRDVDRPPNRRNDNYDR-NRSPPTMPPRDRDRDRDRDYKRRSSLS-PPPPYRDRRHS 120
           RRDDRD DRPP+RR D +DR NRSPP  PP  R+R+RDRDYKRRSSLS PPPPYRDRRHS
Sbjct: 61  RRDDRDADRPPSRRGDYHDRGNRSPP--PPPLRERERDRDYKRRSSLSPPPPPYRDRRHS 120

Query: 121 PPRRSPPPPFKRSRRDDGGGYDGRKGSPRGGFGPGDRRFGYDYGGGYERELRGRPGYVDE 180
           PPRRSPPPP+KRSRRDD GGYDGR+ SPRGGFGPGDRRFGYDY GGY+RE+ GRPGY D+
Sbjct: 121 PPRRSPPPPYKRSRRDD-GGYDGRR-SPRGGFGPGDRRFGYDYAGGYDREMGGRPGYADD 180

Query: 181 RSLGRYIGRSSG--GYQDWDPSRGGHGDPLNAGAGQR 213
           R  GRY+GRSSG  G  +WD  R   GD    G  QR
Sbjct: 181 RPHGRYVGRSSGAFGPPEWDSGRSAFGDSFGVGTNQR 203

[Close]
BLAST of CmoCh10G010320 vs. NCBI nr
Match: gi|694424925|ref|XP_009340224.1| (PREDICTED: LOW QUALITY PROTEIN: serrate RNA effector molecule [Pyrus x bretschneideri])

HSP 1 Score: 243.0 bits (619), Expect = 4.9e-61
Identity = 149/215 (69.30%), Postives = 167/215 (77.67%), Query Frame = 1 

Query: 1   MAEVMNMAAADTADESLDRRRDQQEKSSEEQPHSSPPPQPAAAAAPPPPSRRRDRDERDR 60
           MAE++NM       ESLDRRRD++EKSS++ P S P   PA     P  SRRRDRDERDR
Sbjct: 1   MAEIINMPV-----ESLDRRRDRKEKSSDD-PQSPPQEAPAPPPRQPHXSRRRDRDERDR 60

Query: 61  -RDDRDVDRPPNRRNDNYDRNRSPPTMPPRDRDRDRDRDYKRRSSLSPPPPYRDRRHSPP 120
            +DDRD+DRP +RR D YDRNRSPP  PP  R+RDR+RDYKRRSSLSPPPP+RDRRHSPP
Sbjct: 61  GKDDRDLDRPLSRRPDYYDRNRSPP--PPAIRERDRERDYKRRSSLSPPPPFRDRRHSPP 120

Query: 121 RRSPPPPFKRSRRDDGGGYDGRKGSPRGGFGPGDRRFGYDYGGGYERELRGRPGYVDERS 180
           RRSPPPPFKRSRR+D GGYDGR+GSPRGGFGPGDRRFGYDY  GY+RE+ GR GY DER 
Sbjct: 121 RRSPPPPFKRSRRED-GGYDGRRGSPRGGFGPGDRRFGYDYPSGYDREMGGRAGYGDERP 180

Query: 181 LGRYIGRSSGGY--QDWDPSRGGHGDPLNAGAGQR 213
            GRY+GR SGGY   DWD  RGG GD  + G  QR
Sbjct: 181 HGRYVGRPSGGYGPGDWDSGRGGFGDASSTGTTQR 206

The following BLAST results are available for this feature:
BLAST of CmoCh10G010320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SRRT_ARATH7.3e-4154.81Serrate RNA effector molecule OS=Arabidopsis thaliana GN=SE PE=1 SV=2[more]
BLAST of CmoCh10G010320 vs. TrEMBL
Match NameE-valueIdentityDescription
W9QUS4_9ROSA2.0e-6170.05Uncharacterized protein OS=Morus notabilis GN=L484_022506 PE=4 SV=1[more]
M5WIK1_PRUPE1.6e-5873.30Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022633mg PE=4 S... [more]
A0A067FT79_CITSI5.4e-5159.34Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003865mg PE=4 SV=1[more]
A0A067FSG4_CITSI5.4e-5159.34Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003865mg PE=4 SV=1[more]
A0A067FGB5_CITSI5.4e-5159.34Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003865mg PE=4 SV=1[more]
BLAST of CmoCh10G010320 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G27100.14.1e-4254.81 C2H2 zinc-finger protein SERRATE (SE)[more]
BLAST of CmoCh10G010320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659100411|ref|XP_008451085.1|8.2e-9388.68PREDICTED: serrate RNA effector molecule [Cucumis melo][more]
gi|449452662|ref|XP_004144078.1|5.9e-9187.26PREDICTED: serrate RNA effector molecule [Cucumis sativus][more]
gi|645218527|ref|XP_008231073.1|2.2e-6169.63PREDICTED: serrate RNA effector molecule [Prunus mume][more]
gi|703089410|ref|XP_010093794.1|2.8e-6170.05hypothetical protein L484_022506 [Morus notabilis][more]
gi|694424925|ref|XP_009340224.1|4.9e-6169.30PREDICTED: LOW QUALITY PROTEIN: serrate RNA effector molecule [Pyrus x bretschne... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0048509 regulation of meristem development
biological_process GO:0000381 regulation of alternative mRNA splicing, via spliceosome
biological_process GO:0008380 RNA splicing
biological_process GO:0048367 shoot system development
biological_process GO:2000011 regulation of adaxial/abaxial pattern formation
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0031053 primary miRNA processing
cellular_component GO:0005575 cellular_component
cellular_component GO:0009507 chloroplast
cellular_component GO:0005829 cytosol
cellular_component GO:0010445 nuclear dicing body
cellular_component GO:0016607 nuclear speck
cellular_component GO:0005730 nucleolus
cellular_component GO:0005846 nuclear cap binding complex
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G010320.1CmoCh10G010320.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR13165ARSENITE-RESISTANCE PROTEIN 2coord: 36..202
score: 2.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh10G010320Cucsa.142690Cucumber (Gy14) v1cgycmoB0395
CmoCh10G010320CmaCh10G009790Cucurbita maxima (Rimu)cmacmoB067
CmoCh10G010320CmaCh11G008100Cucurbita maxima (Rimu)cmacmoB105
CmoCh10G010320Csa1G600970Cucumber (Chinese Long) v2cmocuB047
CmoCh10G010320CSPI01G29650Wild cucumber (PI 183967)cmocpiB050
CmoCh10G010320Lsi06G004370Bottle gourd (USVL1VR-Ls)cmolsiB059
CmoCh10G010320Cp4.1LG04g11740Cucurbita pepo (Zucchini)cmocpeB062
CmoCh10G010320Cp4.1LG18g01260Cucurbita pepo (Zucchini)cmocpeB055
CmoCh10G010320MELO3C015627.2Melon (DHL92) v3.6.1cmomedB061
CmoCh10G010320CsaV3_1G042090Cucumber (Chinese Long) v3cmocucB0053
CmoCh10G010320Cla97C03G064350Watermelon (97103) v2cmowmbB046
CmoCh10G010320Bhi02G001404Wax gourdcmowgoB0082
CmoCh10G010320CsGy1G028960Cucumber (Gy14) v2cgybcmoB013
CmoCh10G010320Carg16982Silver-seed gourdcarcmoB0631
CmoCh10G010320Carg18012Silver-seed gourdcarcmoB0240
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh10G010320CmoCh11G008130Cucurbita moschata (Rifu)cmocmoB044
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh10G010320Wax gourdcmowgoB0072
CmoCh10G010320Cucurbita moschata (Rifu)cmocmoB072
CmoCh10G010320Cucurbita maxima (Rimu)cmacmoB573
CmoCh10G010320Melon (DHL92) v3.5.1cmomeB058
CmoCh10G010320Watermelon (Charleston Gray)cmowcgB045
CmoCh10G010320Watermelon (97103) v1cmowmB037
CmoCh10G010320Cucurbita pepo (Zucchini)cmocpeB074