CmoCh10G007770 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh10G007770
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRing finger protein, putative
LocationCmo_Chr10 : 3615598 .. 3616143 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGATTCTGCTTCAAATTATTTTGCTCAACCAACGTCTCATCCAGCAAAATCAAGCCTACCCATGTTGTATTACGGCCTTGTGGTAATCGGAACGGCGGCGATTGTGTTAGTTCTTTACAATTTCATCGTTATCATGTGGTGTTCCGACAACCGTCGTGGCCGAGCTTCGCCGGCGCTGGCTGGAAGTTATGCGGAGATGGTGAATTCAAGCCGTAGCTTGCAGAGCTCGAATAGGAATTTGTTGTGCAGCTTTAAGTTCAAGAAGGGGTCTGCAGCGGCGGCGGCGGCCGAAGAAGAAGGGAATGGGAATGAATGTGTGGTTTGTTTGTCGGCGTTTGAGGAGGGGGAAGAGGTTAAGAAACTGCCGAGATGTATGCATATGTTTCATGCTTGTTGTATAGATATGTGGCTTTTTTCTCACTGTGATTGCCCCCTCTGCCGTGCTCCGGTGGCGGTGCCGGGGTTGAGCAAACGCCAAACCGCGGCGGAGCAACAGGGGAATTCAGGGCATGGGTTGCCGGAATCCGGTGGCTTGGTTTGA

mRNA sequence

ATGAGTGATTCTGCTTCAAATTATTTTGCTCAACCAACGTCTCATCCAGCAAAATCAAGCCTACCCATGTTGTATTACGGCCTTGTGGTAATCGGAACGGCGGCGATTGTGTTAGTTCTTTACAATTTCATCGTTATCATGTGGTGTTCCGACAACCGTCGTGGCCGAGCTTCGCCGGCGCTGGCTGGAAGTTATGCGGAGATGGTGAATTCAAGCCGTAGCTTGCAGAGCTCGAATAGGAATTTGTTGTGCAGCTTTAAGTTCAAGAAGGGGTCTGCAGCGGCGGCGGCGGCCGAAGAAGAAGGGAATGGGAATGAATGTGTGGTTTGTTTGTCGGCGTTTGAGGAGGGGGAAGAGGTTAAGAAACTGCCGAGATGTATGCATATGTTTCATGCTTGTTGTATAGATATGTGGCTTTTTTCTCACTGTGATTGCCCCCTCTGCCGTGCTCCGGTGGCGGTGCCGGGGTTGAGCAAACGCCAAACCGCGGCGGAGCAACAGGGGAATTCAGGGCATGGGTTGCCGGAATCCGGTGGCTTGGTTTGA

Coding sequence (CDS)

ATGAGTGATTCTGCTTCAAATTATTTTGCTCAACCAACGTCTCATCCAGCAAAATCAAGCCTACCCATGTTGTATTACGGCCTTGTGGTAATCGGAACGGCGGCGATTGTGTTAGTTCTTTACAATTTCATCGTTATCATGTGGTGTTCCGACAACCGTCGTGGCCGAGCTTCGCCGGCGCTGGCTGGAAGTTATGCGGAGATGGTGAATTCAAGCCGTAGCTTGCAGAGCTCGAATAGGAATTTGTTGTGCAGCTTTAAGTTCAAGAAGGGGTCTGCAGCGGCGGCGGCGGCCGAAGAAGAAGGGAATGGGAATGAATGTGTGGTTTGTTTGTCGGCGTTTGAGGAGGGGGAAGAGGTTAAGAAACTGCCGAGATGTATGCATATGTTTCATGCTTGTTGTATAGATATGTGGCTTTTTTCTCACTGTGATTGCCCCCTCTGCCGTGCTCCGGTGGCGGTGCCGGGGTTGAGCAAACGCCAAACCGCGGCGGAGCAACAGGGGAATTCAGGGCATGGGTTGCCGGAATCCGGTGGCTTGGTTTGA
Homology
[Close]
BLAST of CmoCh10G007770 vs. Swiss-Prot
Match: ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.5e-16
Identity = 59/182 (32.42%), Postives = 88/182 (48.35%), Query Frame = 1 

Query: 7   NYFAQPTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPAL----- 66
           ++F    S  + SS   L   L+ I T+A++LV Y  ++  +C  + +  +S  L     
Sbjct: 40  SFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHN 99

Query: 67  -AGSYAEMVNSSRSLQSSNRNLLCS---FKFKKGSAAAAAAEEEGNGNECVVCLSAFEEG 126
             G ++     S +    N +++ S   +K+K G           +G++C VCLS FEE 
Sbjct: 100 GEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFV-------DGSDCSVCLSEFEEN 159

Query: 127 EEVKKLPRCMHMFHACCIDMWLFSHCDCPLCRA-------PVAVPGLSKRQTAAEQQGNS 173
           E ++ LP+C H FH  CID WL SH +CPLCRA       P A  G +     A  Q NS
Sbjct: 160 ESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTASVGQNVSVVVA-NQSNS 213

[Close]
BLAST of CmoCh10G007770 vs. Swiss-Prot
Match: EL5_ORYSJ (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.5e-15
Identity = 59/173 (34.10%), Postives = 84/173 (48.55%), Query Frame = 1 

Query: 1   MSDSASNYFAQPTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIM---WCSDNRRGRA 60
           M +S+S+    P S PA  +  M   G+  +    IV        ++   +C + RR   
Sbjct: 12  MDESSSSSSPSPVSAPAGQAA-MTAGGIATVAAVLIVFAALTLAFVLLQCYCDERRRAVT 71

Query: 61  SPALAGSYAEMVNSSRSLQSSN------------RNLLCSFKFKKGSAAAAAA---EEEG 120
           + + +G         RS    +            R+L  +  + + +AAAAA    EE+ 
Sbjct: 72  TTSTSGRGRRPRPRRRSGSGGDGGTGGGVDPEVLRSLPVTV-YSRSTAAAAAKEEEEEDD 131

Query: 121 NGNECVVCLSAFEEGEEVKKLPRCMHMFHACCIDMWLFSHCDCPLCRAPVAVP 156
           +G EC VCL+  E+GEE + LPRC H FHA C+DMWL SH  CPLCR  V VP
Sbjct: 132 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVVP 182

[Close]
BLAST of CmoCh10G007770 vs. Swiss-Prot
Match: ATL1_ARATH (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.2e-15
Identity = 52/152 (34.21%), Postives = 79/152 (51.97%), Query Frame = 1 

Query: 12  PTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSD-------NRRGRAS---PAL 71
           P +  + ++ P+L   ++ I   A +LV Y   VI  C +        RR R+S   P +
Sbjct: 32  PRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSSDQNPLM 91

Query: 72  AGSYAEMVNSSRSLQSSNRNLLCSFKFKKGSAAAAAAEEEGNGNECVVCLSAFEEGEEVK 131
             S  E+   +R L  S    +  FKFKK    A   ++  N  EC VCL+ F+E E+++
Sbjct: 92  IYSPHEV---NRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLR 151

Query: 132 KLPRCMHMFHACCIDMWLFSHCDCPLCRAPVA 154
            +P C H+FH  CID+WL  + +CPLCR  V+
Sbjct: 152 IIPNCCHVFHIDCIDIWLQGNANCPLCRTSVS 180

[Close]
BLAST of CmoCh10G007770 vs. Swiss-Prot
Match: ATL53_ARATH (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana GN=ATL53 PE=3 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 8.8e-13
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 1 

Query: 103 NGNECVVCLSAFEEGEEVKKLPRCMHMFHACCIDMWLFSHCDCPLCRAPVAVP 156
           NG +C +CL  F E E ++ LP+C H FH  CID WL SH +CPLCRA + VP
Sbjct: 151 NGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIVP 203

[Close]
BLAST of CmoCh10G007770 vs. Swiss-Prot
Match: ATL16_ARATH (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-12
Identity = 57/166 (34.34%), Postives = 76/166 (45.78%), Query Frame = 1 

Query: 12  PTSHPAKS---SLPMLYYGLVVIGTAAIVLVLYNFIVIMWC--------------SDNRR 71
           P  H A S   S P+L   ++ I   A +LV Y   VI  C              S  RR
Sbjct: 22  PIFHRASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSLSRRRR 81

Query: 72  GRASPALAGSYAEMVNSSRSLQSSNRNLLCSFKFKKGS-------AAAAAAEEEGNGNEC 131
               P +  S  E+   SR L  S    +  FKFKK               EEE    EC
Sbjct: 82  NDQDPLMVYS-PEL--RSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQEC 141

Query: 132 VVCLSAFEEGEEVKKLPRCMHMFHACCIDMWLFSHCDCPLCRAPVA 154
            VCLS F++ E+++ +P C H+FH  CID+WL ++ +CPLCR  V+
Sbjct: 142 SVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVS 184

[Close]
BLAST of CmoCh10G007770 vs. TrEMBL
Match: A0A0A0LWX2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G595820 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.0e-56
Identity = 125/178 (70.22%), Postives = 136/178 (76.40%), Query Frame = 1 

Query: 1   MSDSASNYFAQPTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPA 60
           MSDS+++     T HPAKSSLPMLYYGLVV+GTAAIVLVLYNFIVI WCSDNR  R    
Sbjct: 1   MSDSSTS---TSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRR--- 60

Query: 61  LAGSYAEMVNSSRSLQSSNRNLLCSFKFKKGSAAAAAAEEEGNGNECVVCLSAFEEGEEV 120
           +AGSY EM+NSSRS QSS    L SFKFKK    A A  EEGNGNEC VCLSAFE+GEEV
Sbjct: 61  MAGSYEEMMNSSRSFQSS----LSSFKFKK---VAGAGAEEGNGNECAVCLSAFEDGEEV 120

Query: 121 KKLPRCMHMFHACCIDMWLFSHCDCPLCRAP--VAVPGLSKRQTAAEQQGNSGHGLPE 177
           KKLPRC H FHA CIDMWL+SH DCPLCRAP  VAV G S+ +  AEQ+ NSGH L E
Sbjct: 121 KKLPRCTHTFHASCIDMWLYSHSDCPLCRAPVAVAVAGRSRHEATAEQEENSGHVLLE 165

[Close]
BLAST of CmoCh10G007770 vs. TrEMBL
Match: B9HDL4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s14650g PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 7.2e-38
Identity = 92/170 (54.12%), Postives = 114/170 (67.06%), Query Frame = 1 

Query: 12  PTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPALAGSYAEMVNS 71
           P   P KS+LPMLYYGLVV+GTAAIVL +YN I+I WC+  +RG  S      + E V +
Sbjct: 18  PPPPPHKSNLPMLYYGLVVVGTAAIVLAVYNLIIIKWCA--QRGGRSGQGPNVFTE-VTA 77

Query: 72  SRSLQSSNRNLLCSFKFKKGSAAAAAAEEEGNGNECVVCLSAFEEGEEVKKLPRCMHMFH 131
           S+S + SN NL  SFK+KKG       +++G+G EC VCLSAFEEGEEV++LPRC H FH
Sbjct: 78  SQSFEHSNSNLPSSFKYKKGKIDGD--QDQGSGYECAVCLSAFEEGEEVRQLPRCKHSFH 137

Query: 132 ACCIDMWLFSHCDCPLCRA----PVAVPGLSKRQTAAEQQGNSGHGLPES 178
           A CIDMWL+SH DCPLCR+    P+AV        AA+   NS  GL +S
Sbjct: 138 APCIDMWLYSHSDCPLCRSSVDPPLAVCNRRTAAAAADTSENSREGLLDS 182

[Close]
BLAST of CmoCh10G007770 vs. TrEMBL
Match: A0A059CUM5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C03568 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-36
Identity = 93/180 (51.67%), Postives = 116/180 (64.44%), Query Frame = 1 

Query: 12  PTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRR-GRASPALAGSYAEMVN 71
           P   P+KS+LPMLYYGLVV+GTAAIVL LYN I+I WC+   R  R    L     E++ 
Sbjct: 16  PPPLPSKSNLPMLYYGLVVVGTAAIVLALYNLIIIRWCTSRYRISRRGERLV----EVMA 75

Query: 72  SSRSLQSSNRNLLCSFKFKKGSAAAAAAEEEGNGNECVVCLSAFEEGEEVKKLPRCMHMF 131
           +SRS ++ +RNL  SFK+KK   AAA A+  G+  EC VCLSAFEEGEEV++LPRC H++
Sbjct: 76  ASRSFENPHRNLPSSFKYKKD--AAAGAQGPGSEYECAVCLSAFEEGEEVRQLPRCKHLY 135

Query: 132 HACCIDMWLFSHCDCPLCRAPVAVPGLSKR------------QTAAEQQGNSGHGLPESG 179
           H  CIDMWL+SH DCPLCR+P     L  +            ++A E   NS  GL ESG
Sbjct: 136 HVSCIDMWLYSHSDCPLCRSPAHPLSLQPQLQPPPPPPPPPLESAPE---NSREGLLESG 186

[Close]
BLAST of CmoCh10G007770 vs. TrEMBL
Match: M5WAM2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012149mg PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.8e-34
Identity = 80/167 (47.90%), Postives = 108/167 (64.67%), Query Frame = 1 

Query: 9   FAQPTSHPA-----KSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPALAG 68
           F+QP   P      K++LPMLYYGL+V+GTAAIVL +YN + I W S+   G++ P+ + 
Sbjct: 12  FSQPPPPPPPPPAPKTNLPMLYYGLIVVGTAAIVLAMYNLVFIKWTSNRHGGQSPPSRSS 71

Query: 69  SYAEMVNSSRSLQSSNRNLLCSFKFKKGSAAAAAAEEEGNGNECVVCLSAFEEGEEVKKL 128
           +   +++++R+ +S +   L SFK+KK   +    +   N  EC VCLSAFE+GEEV+KL
Sbjct: 72  N--TLMDANRTRRSRSFENLDSFKYKKKQGSVTQQDGVENYVECAVCLSAFEDGEEVRKL 131

Query: 129 PRCMHMFHACCIDMWLFSHCDCPLCRAPVAVPGLSKRQTAAEQQGNS 171
           P C H FHA CIDMWL+SH DCPLCRAPV V     RQ     + NS
Sbjct: 132 PTCKHSFHAPCIDMWLYSHSDCPLCRAPVPVISWCHRQLTTTPEDNS 176

[Close]
BLAST of CmoCh10G007770 vs. TrEMBL
Match: A0A061GT61_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_037571 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.8e-34
Identity = 83/166 (50.00%), Postives = 105/166 (63.25%), Query Frame = 1 

Query: 12  PTSHPA--KSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNR-RGRASPALAGSYAEM 71
           P+S P   KS+LPMLYYGLVV+GTAAIVL +YN I+I WC+  R   R  P         
Sbjct: 7   PSSPPLSPKSNLPMLYYGLVVVGTAAIVLAIYNLIIIRWCTQRRDESRQRPTRLAE---- 66

Query: 72  VNSSRSLQSSNRNLLCSFKFKKGSAAAAAAEEEGNGNECVVCLSAFEEGEEVKKLPRCMH 131
           + + +S ++ +RNLL SFK++K S+   + ++ G   EC VCLS FE+GEEV++LPRC H
Sbjct: 67  LTAGQSFENPSRNLLSSFKYRKESSNMGS-QDPGGEYECAVCLSIFEDGEEVRQLPRCKH 126

Query: 132 MFHACCIDMWLFSHCDCPLCRAPVAVPGLSKRQTAAEQQGNSGHGL 175
            FHA CIDMWL+SH DCPLCRA V       R T      NS   L
Sbjct: 127 SFHAPCIDMWLYSHFDCPLCRASVEPSPFCHRHTVVNSPENSREDL 167

[Close]
BLAST of CmoCh10G007770 vs. TAIR10
Match: AT5G17600.1 (AT5G17600.1 RING/U-box superfamily protein)

HSP 1 Score: 85.5 bits (210), Expect = 3.7e-17
Identity = 59/182 (32.42%), Postives = 88/182 (48.35%), Query Frame = 1 

Query: 7   NYFAQPTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPAL----- 66
           ++F    S  + SS   L   L+ I T+A++LV Y  ++  +C  + +  +S  L     
Sbjct: 40  SFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHN 99

Query: 67  -AGSYAEMVNSSRSLQSSNRNLLCS---FKFKKGSAAAAAAEEEGNGNECVVCLSAFEEG 126
             G ++     S +    N +++ S   +K+K G           +G++C VCLS FEE 
Sbjct: 100 GEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFV-------DGSDCSVCLSEFEEN 159

Query: 127 EEVKKLPRCMHMFHACCIDMWLFSHCDCPLCRA-------PVAVPGLSKRQTAAEQQGNS 173
           E ++ LP+C H FH  CID WL SH +CPLCRA       P A  G +     A  Q NS
Sbjct: 160 ESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTASVGQNVSVVVA-NQSNS 213

[Close]
BLAST of CmoCh10G007770 vs. TAIR10
Match: AT1G04360.1 (AT1G04360.1 RING/U-box superfamily protein)

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-16
Identity = 52/152 (34.21%), Postives = 79/152 (51.97%), Query Frame = 1 

Query: 12  PTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSD-------NRRGRAS---PAL 71
           P +  + ++ P+L   ++ I   A +LV Y   VI  C +        RR R+S   P +
Sbjct: 32  PRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSSDQNPLM 91

Query: 72  AGSYAEMVNSSRSLQSSNRNLLCSFKFKKGSAAAAAAEEEGNGNECVVCLSAFEEGEEVK 131
             S  E+   +R L  S    +  FKFKK    A   ++  N  EC VCL+ F+E E+++
Sbjct: 92  IYSPHEV---NRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLR 151

Query: 132 KLPRCMHMFHACCIDMWLFSHCDCPLCRAPVA 154
            +P C H+FH  CID+WL  + +CPLCR  V+
Sbjct: 152 IIPNCCHVFHIDCIDIWLQGNANCPLCRTSVS 180

[Close]
BLAST of CmoCh10G007770 vs. TAIR10
Match: AT4G17905.1 (AT4G17905.1 RING/U-box superfamily protein)

HSP 1 Score: 75.1 bits (183), Expect = 5.0e-14
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 1 

Query: 103 NGNECVVCLSAFEEGEEVKKLPRCMHMFHACCIDMWLFSHCDCPLCRAPVAVP 156
           NG +C +CL  F E E ++ LP+C H FH  CID WL SH +CPLCRA + VP
Sbjct: 151 NGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIVP 203

[Close]
BLAST of CmoCh10G007770 vs. TAIR10
Match: AT4G33565.1 (AT4G33565.1 RING/U-box superfamily protein)

HSP 1 Score: 74.3 bits (181), Expect = 8.5e-14
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1 

Query: 104 GNECVVCLSAFEEGEEVKKLPRCMHMFHACCIDMWLFSHCDCPLCRAPV 153
           G +C VCLS FEE E ++ LP+C H FH  CID WL SH +CPLCRAP+
Sbjct: 214 GTDCSVCLSEFEEEETLRLLPKCKHAFHLYCIDTWLRSHTNCPLCRAPI 262

[Close]
BLAST of CmoCh10G007770 vs. TAIR10
Match: AT5G43420.1 (AT5G43420.1 RING/U-box superfamily protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-13
Identity = 57/166 (34.34%), Postives = 76/166 (45.78%), Query Frame = 1 

Query: 12  PTSHPAKS---SLPMLYYGLVVIGTAAIVLVLYNFIVIMWC--------------SDNRR 71
           P  H A S   S P+L   ++ I   A +LV Y   VI  C              S  RR
Sbjct: 22  PIFHRASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSLSRRRR 81

Query: 72  GRASPALAGSYAEMVNSSRSLQSSNRNLLCSFKFKKGS-------AAAAAAEEEGNGNEC 131
               P +  S  E+   SR L  S    +  FKFKK               EEE    EC
Sbjct: 82  NDQDPLMVYS-PEL--RSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQEC 141

Query: 132 VVCLSAFEEGEEVKKLPRCMHMFHACCIDMWLFSHCDCPLCRAPVA 154
            VCLS F++ E+++ +P C H+FH  CID+WL ++ +CPLCR  V+
Sbjct: 142 SVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVS 184

[Close]
BLAST of CmoCh10G007770 vs. NCBI nr
Match: gi|659100051|ref|XP_008450904.1| (PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo])

HSP 1 Score: 229.9 bits (585), Expect = 3.4e-57
Identity = 127/177 (71.75%), Postives = 140/177 (79.10%), Query Frame = 1 

Query: 1   MSDSASNYFAQPTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPA 60
           MSDS+++     T HPAKSSLPMLYYGLVV+GTAAIVLVLYNFIVI WCSD+R  R    
Sbjct: 1   MSDSSTS-----TPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDSRHRRR--- 60

Query: 61  LAGSYAEMVNSSRSLQSSNRNLLCSFKFKKGSAAAAAAEEEGNGNECVVCLSAFEEGEEV 120
           +A SY EM+NSSRS QSS    L SFKFKK +AA A AEE GNGNEC VCLSAFE+GEEV
Sbjct: 61  MAVSYEEMMNSSRSFQSS----LSSFKFKKVAAATATAEE-GNGNECAVCLSAFEDGEEV 120

Query: 121 KKLPRCMHMFHACCIDMWLFSHCDCPLCRAPVAVPGLSKRQ-TAAEQQGNSGHGLPE 177
           KKLPRC H FHA CIDMWL+SH DCPLCRAPVAVPG+S+ + T AEQ  NSGH L E
Sbjct: 121 KKLPRCTHTFHASCIDMWLYSHSDCPLCRAPVAVPGVSRHETTTAEQDENSGHVLLE 164

[Close]
BLAST of CmoCh10G007770 vs. NCBI nr
Match: gi|449452749|ref|XP_004144121.1| (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 2.9e-56
Identity = 125/178 (70.22%), Postives = 136/178 (76.40%), Query Frame = 1 

Query: 1   MSDSASNYFAQPTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPA 60
           MSDS+++     T HPAKSSLPMLYYGLVV+GTAAIVLVLYNFIVI WCSDNR  R    
Sbjct: 1   MSDSSTS---TSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRR--- 60

Query: 61  LAGSYAEMVNSSRSLQSSNRNLLCSFKFKKGSAAAAAAEEEGNGNECVVCLSAFEEGEEV 120
           +AGSY EM+NSSRS QSS    L SFKFKK    A A  EEGNGNEC VCLSAFE+GEEV
Sbjct: 61  MAGSYEEMMNSSRSFQSS----LSSFKFKK---VAGAGAEEGNGNECAVCLSAFEDGEEV 120

Query: 121 KKLPRCMHMFHACCIDMWLFSHCDCPLCRAP--VAVPGLSKRQTAAEQQGNSGHGLPE 177
           KKLPRC H FHA CIDMWL+SH DCPLCRAP  VAV G S+ +  AEQ+ NSGH L E
Sbjct: 121 KKLPRCTHTFHASCIDMWLYSHSDCPLCRAPVAVAVAGRSRHEATAEQEENSGHVLLE 165

[Close]
BLAST of CmoCh10G007770 vs. NCBI nr
Match: gi|224087937|ref|XP_002308266.1| (hypothetical protein POPTR_0006s14650g [Populus trichocarpa])

HSP 1 Score: 165.2 bits (417), Expect = 1.0e-37
Identity = 92/170 (54.12%), Postives = 114/170 (67.06%), Query Frame = 1 

Query: 12  PTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPALAGSYAEMVNS 71
           P   P KS+LPMLYYGLVV+GTAAIVL +YN I+I WC+  +RG  S      + E V +
Sbjct: 18  PPPPPHKSNLPMLYYGLVVVGTAAIVLAVYNLIIIKWCA--QRGGRSGQGPNVFTE-VTA 77

Query: 72  SRSLQSSNRNLLCSFKFKKGSAAAAAAEEEGNGNECVVCLSAFEEGEEVKKLPRCMHMFH 131
           S+S + SN NL  SFK+KKG       +++G+G EC VCLSAFEEGEEV++LPRC H FH
Sbjct: 78  SQSFEHSNSNLPSSFKYKKGKIDGD--QDQGSGYECAVCLSAFEEGEEVRQLPRCKHSFH 137

Query: 132 ACCIDMWLFSHCDCPLCRA----PVAVPGLSKRQTAAEQQGNSGHGLPES 178
           A CIDMWL+SH DCPLCR+    P+AV        AA+   NS  GL +S
Sbjct: 138 APCIDMWLYSHSDCPLCRSSVDPPLAVCNRRTAAAAADTSENSREGLLDS 182

[Close]
BLAST of CmoCh10G007770 vs. NCBI nr
Match: gi|743905153|ref|XP_011045970.1| (PREDICTED: RING-H2 finger protein ATL52-like [Populus euphratica])

HSP 1 Score: 161.8 bits (408), Expect = 1.1e-36
Identity = 86/154 (55.84%), Postives = 109/154 (70.78%), Query Frame = 1 

Query: 12  PTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPALAGSYAEMVNS 71
           P   P KS+LPMLYYGLVV+GTAAIVL  YN I+I WC+  +RG  S      + E V +
Sbjct: 28  PPPPPHKSNLPMLYYGLVVVGTAAIVLAAYNLIIIKWCA--QRGGRSGQGPNVFIE-VTA 87

Query: 72  SRSLQSSNRNLLCSFKFKKGSAAAAAAEEEGNGNECVVCLSAFEEGEEVKKLPRCMHMFH 131
           S+S ++SN NL  SFK+KKG       +++G+  EC VCLSAFEEGEEV++LPRC H+FH
Sbjct: 88  SQSFENSNSNLPSSFKYKKGKTGGD--QDQGSDYECAVCLSAFEEGEEVRQLPRCKHLFH 147

Query: 132 ACCIDMWLFSHCDCPLCRAPVAVP-GLSKRQTAA 165
           A CIDMWL+SH DCPLCR+ +  P  +S R+ AA
Sbjct: 148 APCIDMWLYSHSDCPLCRSSIDPPLAVSNRRPAA 176

[Close]
BLAST of CmoCh10G007770 vs. NCBI nr
Match: gi|702304328|ref|XP_010049538.1| (PREDICTED: RING-H2 finger protein ATL1-like [Eucalyptus grandis])

HSP 1 Score: 161.4 bits (407), Expect = 1.5e-36
Identity = 93/180 (51.67%), Postives = 116/180 (64.44%), Query Frame = 1 

Query: 12  PTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRR-GRASPALAGSYAEMVN 71
           P   P+KS+LPMLYYGLVV+GTAAIVL LYN I+I WC+   R  R    L     E++ 
Sbjct: 16  PPPLPSKSNLPMLYYGLVVVGTAAIVLALYNLIIIRWCTSRYRISRRGERLV----EVMA 75

Query: 72  SSRSLQSSNRNLLCSFKFKKGSAAAAAAEEEGNGNECVVCLSAFEEGEEVKKLPRCMHMF 131
           +SRS ++ +RNL  SFK+KK   AAA A+  G+  EC VCLSAFEEGEEV++LPRC H++
Sbjct: 76  ASRSFENPHRNLPSSFKYKKD--AAAGAQGPGSEYECAVCLSAFEEGEEVRQLPRCKHLY 135

Query: 132 HACCIDMWLFSHCDCPLCRAPVAVPGLSKR------------QTAAEQQGNSGHGLPESG 179
           H  CIDMWL+SH DCPLCR+P     L  +            ++A E   NS  GL ESG
Sbjct: 136 HVSCIDMWLYSHSDCPLCRSPAHPLSLQPQLQPPPPPPPPPLESAPE---NSREGLLESG 186

The following BLAST results are available for this feature:
BLAST of CmoCh10G007770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL52_ARATH6.5e-1632.42RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1[more]
EL5_ORYSJ2.5e-1534.10E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV... [more]
ATL1_ARATH3.2e-1534.21RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1[more]
ATL53_ARATH8.8e-1354.72Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana GN=ATL53 PE=3 SV=2[more]
ATL16_ARATH2.6e-1234.34RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2 SV=1[more]
BLAST of CmoCh10G007770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWX2_CUCSA2.0e-5670.22Uncharacterized protein OS=Cucumis sativus GN=Csa_1G595820 PE=4 SV=1[more]
B9HDL4_POPTR7.2e-3854.12Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s14650g PE=4 SV=1[more]
A0A059CUM5_EUCGR1.0e-3651.67Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C03568 PE=4 SV=1[more]
M5WAM2_PRUPE2.8e-3447.90Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012149mg PE=4 SV=1[more]
A0A061GT61_THECC4.8e-3450.00RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_037571 PE=4 S... [more]
BLAST of CmoCh10G007770 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G17600.13.7e-1732.42 RING/U-box superfamily protein[more]
AT1G04360.11.8e-1634.21 RING/U-box superfamily protein[more]
AT4G17905.15.0e-1454.72 RING/U-box superfamily protein[more]
AT4G33565.18.5e-1461.22 RING/U-box superfamily protein[more]
AT5G43420.11.4e-1334.34 RING/U-box superfamily protein[more]
BLAST of CmoCh10G007770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659100051|ref|XP_008450904.1|3.4e-5771.75PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo][more]
gi|449452749|ref|XP_004144121.1|2.9e-5670.22PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus][more]
gi|224087937|ref|XP_002308266.1|1.0e-3754.12hypothetical protein POPTR_0006s14650g [Populus trichocarpa][more]
gi|743905153|ref|XP_011045970.1|1.1e-3655.84PREDICTED: RING-H2 finger protein ATL52-like [Populus euphratica][more]
gi|702304328|ref|XP_010049538.1|1.5e-3651.67PREDICTED: RING-H2 finger protein ATL1-like [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G007770.1CmoCh10G007770.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 105..149
score: 5.8
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 107..148
score: 0.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 107..149
score: 11
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 103..152
score: 4.6
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 12..173
score: 2.3
NoneNo IPR availablePANTHERPTHR14155:SF93SUBFAMILY NOT NAMEDcoord: 12..173
score: 2.3
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 97..155
score: 2.52

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh10G007770Cucsa.141560Cucumber (Gy14) v1cgycmoB0393
CmoCh10G007770CmaCh10G007510Cucurbita maxima (Rimu)cmacmoB067
CmoCh10G007770CmaCh11G007180Cucurbita maxima (Rimu)cmacmoB099
CmoCh10G007770Cla011176Watermelon (97103) v1cmowmB042
CmoCh10G007770Csa1G595820Cucumber (Chinese Long) v2cmocuB038
CmoCh10G007770MELO3C015506Melon (DHL92) v3.5.1cmomeB050
CmoCh10G007770ClCG03G015270Watermelon (Charleston Gray)cmowcgB049
CmoCh10G007770CSPI01G28520Wild cucumber (PI 183967)cmocpiB041
CmoCh10G007770Lsi06G003120Bottle gourd (USVL1VR-Ls)cmolsiB050
CmoCh10G007770Cp4.1LG18g03210Cucurbita pepo (Zucchini)cmocpeB055
CmoCh10G007770Cp4.1LG04g11040Cucurbita pepo (Zucchini)cmocpeB069
CmoCh10G007770MELO3C015506.2Melon (DHL92) v3.6.1cmomedB053
CmoCh10G007770CsaV3_1G040790Cucumber (Chinese Long) v3cmocucB0045
CmoCh10G007770CsaV3_7G034530Cucumber (Chinese Long) v3cmocucB0089
CmoCh10G007770Cla97C03G065500Watermelon (97103) v2cmowmbB051
CmoCh10G007770Bhi02G001530Wax gourdcmowgoB0080
CmoCh10G007770CsGy1G027660Cucumber (Gy14) v2cgybcmoB006
CmoCh10G007770Carg21937Silver-seed gourdcarcmoB1197
CmoCh10G007770Carg12971Silver-seed gourdcarcmoB0128
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh10G007770CmoCh11G007330Cucurbita moschata (Rifu)cmocmoB038
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh10G007770Cucurbita maxima (Rimu)cmacmoB346
CmoCh10G007770Cucurbita maxima (Rimu)cmacmoB446
CmoCh10G007770Cucurbita maxima (Rimu)cmacmoB757
CmoCh10G007770Cucurbita maxima (Rimu)cmacmoB876
CmoCh10G007770Wild cucumber (PI 183967)cmocpiB066
CmoCh10G007770Wild cucumber (PI 183967)cmocpiB070
CmoCh10G007770Wild cucumber (PI 183967)cmocpiB076
CmoCh10G007770Cucumber (Chinese Long) v2cmocuB065
CmoCh10G007770Cucumber (Chinese Long) v2cmocuB068
CmoCh10G007770Cucumber (Chinese Long) v2cmocuB074
CmoCh10G007770Melon (DHL92) v3.5.1cmomeB048
CmoCh10G007770Melon (DHL92) v3.5.1cmomeB067
CmoCh10G007770Melon (DHL92) v3.5.1cmomeB072
CmoCh10G007770Watermelon (Charleston Gray)cmowcgB034
CmoCh10G007770Watermelon (Charleston Gray)cmowcgB039
CmoCh10G007770Watermelon (97103) v1cmowmB034
CmoCh10G007770Watermelon (97103) v1cmowmB059
CmoCh10G007770Cucurbita pepo (Zucchini)cmocpeB048
CmoCh10G007770Cucurbita pepo (Zucchini)cmocpeB060
CmoCh10G007770Cucurbita pepo (Zucchini)cmocpeB076
CmoCh10G007770Bottle gourd (USVL1VR-Ls)cmolsiB035
CmoCh10G007770Bottle gourd (USVL1VR-Ls)cmolsiB047
CmoCh10G007770Cucumber (Gy14) v2cgybcmoB146
CmoCh10G007770Cucumber (Gy14) v2cgybcmoB441
CmoCh10G007770Cucumber (Gy14) v2cgybcmoB876
CmoCh10G007770Melon (DHL92) v3.6.1cmomedB051
CmoCh10G007770Melon (DHL92) v3.6.1cmomedB073
CmoCh10G007770Melon (DHL92) v3.6.1cmomedB078
CmoCh10G007770Silver-seed gourdcarcmoB0772
CmoCh10G007770Cucumber (Chinese Long) v3cmocucB0070
CmoCh10G007770Cucumber (Chinese Long) v3cmocucB0076
CmoCh10G007770Watermelon (97103) v2cmowmbB044
CmoCh10G007770Watermelon (97103) v2cmowmbB076
CmoCh10G007770Wax gourdcmowgoB0044
CmoCh10G007770Wax gourdcmowgoB0066
CmoCh10G007770Wax gourdcmowgoB0067
CmoCh10G007770Cucurbita moschata (Rifu)cmocmoB061
CmoCh10G007770Cucurbita moschata (Rifu)cmocmoB067
CmoCh10G007770Cucurbita moschata (Rifu)cmocmoB077
CmoCh10G007770Cucumber (Gy14) v1cgycmoB0279
CmoCh10G007770Cucumber (Gy14) v1cgycmoB0980