CmoCh10G007220 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh10G007220
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr10 : 3310501 .. 3310990 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATCAAGAGATTAGGTAGAATTTGGATGAAATCGGGGAAAGATGCGGCGTCGCGTCCTTCTCGGGATGATCCGTCCTTCGACGATTTCTGTCCCATTGACAGCCAAGGTAATCGATCCTCTCCGGAGTACTTTCGCTGGCGTTTTTTAATTTCTTATTCGGCGTTTGATTTACAGTGCAAGAGGAGATGGTTCGTTCGTTCGAAAGGGCAAATGATCAACAGAGTCTTCTATGGAGGGTATCGTATGATTCAGCGGATTTTATTTAATTTTATTTTGTTCTTAAGTGGAGGATTAGGGATTCTCATGTCGATTGTTCTTCTCTGTGGATCGACTGTTCGTCAGACTGTGTTTGCGGCATTTCTTTTTTGCTTTGTGGCTTTTCTTCTTTACTCAATCGTTCAGCAGGTTTCTTCTCCATTTGAACTGGTATGCTAATATTGCTGAGATTTATCGATTTGTCCTGCGATGTATGCCGTTTTGTTGA

mRNA sequence

ATGGCTATCAAGAGATTAGGTAGAATTTGGATGAAATCGGGGAAAGATGCGGCGTCGCGTCCTTCTCGGGATGATCCGTCCTTCGACGATTTCTGTCCCATTGACAGCCAAGGTAATCGATCCTCTCCGGAGTACTTTCGCTGGCGTTTTTTAATTTCTTATTCGGCGTTTGATTTACAGTGCAAGAGGAGATGGTTCGTTCGTTCGAAAGGGCAAATGATCAACAGAGTCTTCTATGGAGGACTGTGTTTGCGGCATTTCTTTTTTGCTTTGTGGCTTTTCTTCTTTACTCAATCGTTCAGCAGGTTTCTTCTCCATTTGAACTGGTATGCTAATATTGCTGAGATTTATCGATTTGTCCTGCGATGTATGCCGTTTTGTTGA

Coding sequence (CDS)

ATGGCTATCAAGAGATTAGGTAGAATTTGGATGAAATCGGGGAAAGATGCGGCGTCGCGTCCTTCTCGGGATGATCCGTCCTTCGACGATTTCTGTCCCATTGACAGCCAAGGTAATCGATCCTCTCCGGAGTACTTTCGCTGGCGTTTTTTAATTTCTTATTCGGCGTTTGATTTACAGTGCAAGAGGAGATGGTTCGTTCGTTCGAAAGGGCAAATGATCAACAGAGTCTTCTATGGAGGACTGTGTTTGCGGCATTTCTTTTTTGCTTTGTGGCTTTTCTTCTTTACTCAATCGTTCAGCAGGTTTCTTCTCCATTTGAACTGGTATGCTAATATTGCTGAGATTTATCGATTTGTCCTGCGATGTATGCCGTTTTGTTGA
Homology
[Close]
BLAST of CmoCh10G007220 vs. NCBI nr
Match: gi|659099864|ref|XP_008450814.1| (PREDICTED: uncharacterized protein LOC103492288 isoform X1 [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 3.1e-12
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 1 

Query: 62  KRRWFVRSKGQMINRVFYGGLCLRHFFFALWLFFFTQSFSRFLLHLN 109
           KRRWFVR KGQMINRVFYGGLCLR+FFFA+ +FF+T+ FSRFLLH N
Sbjct: 25  KRRWFVRLKGQMINRVFYGGLCLRYFFFAMRVFFYTRFFSRFLLHGN 71

The following BLAST results are available for this feature:
BLAST of CmoCh10G007220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh10G007220 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh10G007220 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh10G007220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659099864|ref|XP_008450814.1|3.1e-1280.85PREDICTED: uncharacterized protein LOC103492288 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G007220.1CmoCh10G007220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh10G007220CmaCh10G006960Cucurbita maxima (Rimu)cmacmoB067
CmoCh10G007220Carg13018Silver-seed gourdcarcmoB0128
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh10G007220Cucurbita pepo (Zucchini)cmocpeB048
CmoCh10G007220Cucurbita pepo (Zucchini)cmocpeB055
CmoCh10G007220Cucurbita pepo (Zucchini)cmocpeB069
CmoCh10G007220Cucurbita pepo (Zucchini)cmocpeB076
CmoCh10G007220Bottle gourd (USVL1VR-Ls)cmolsiB035
CmoCh10G007220Bottle gourd (USVL1VR-Ls)cmolsiB047
CmoCh10G007220Bottle gourd (USVL1VR-Ls)cmolsiB050
CmoCh10G007220Bottle gourd (USVL1VR-Ls)cmolsiB067
CmoCh10G007220Cucumber (Gy14) v2cgybcmoB006
CmoCh10G007220Cucumber (Gy14) v2cgybcmoB146
CmoCh10G007220Cucumber (Gy14) v2cgybcmoB441
CmoCh10G007220Melon (DHL92) v3.6.1cmomedB053
CmoCh10G007220Melon (DHL92) v3.6.1cmomedB073
CmoCh10G007220Melon (DHL92) v3.6.1cmomedB078
CmoCh10G007220Silver-seed gourdcarcmoB0047
CmoCh10G007220Silver-seed gourdcarcmoB0772
CmoCh10G007220Silver-seed gourdcarcmoB1041
CmoCh10G007220Silver-seed gourdcarcmoB1205
CmoCh10G007220Cucumber (Chinese Long) v3cmocucB0045
CmoCh10G007220Cucumber (Chinese Long) v3cmocucB0070
CmoCh10G007220Cucumber (Chinese Long) v3cmocucB0076
CmoCh10G007220Cucumber (Chinese Long) v3cmocucB0081
CmoCh10G007220Watermelon (97103) v2cmowmbB044
CmoCh10G007220Watermelon (97103) v2cmowmbB051
CmoCh10G007220Watermelon (97103) v2cmowmbB063
CmoCh10G007220Watermelon (97103) v2cmowmbB074
CmoCh10G007220Wax gourdcmowgoB0044
CmoCh10G007220Wax gourdcmowgoB0053
CmoCh10G007220Wax gourdcmowgoB0066
CmoCh10G007220Wax gourdcmowgoB0080
CmoCh10G007220Cucurbita moschata (Rifu)cmocmoB038
CmoCh10G007220Cucurbita moschata (Rifu)cmocmoB050
CmoCh10G007220Cucurbita moschata (Rifu)cmocmoB058
CmoCh10G007220Cucurbita moschata (Rifu)cmocmoB070
CmoCh10G007220Cucurbita moschata (Rifu)cmocmoB075
CmoCh10G007220Cucumber (Gy14) v1cgycmoB0279
CmoCh10G007220Cucumber (Gy14) v1cgycmoB0803
CmoCh10G007220Cucurbita maxima (Rimu)cmacmoB099
CmoCh10G007220Cucurbita maxima (Rimu)cmacmoB169
CmoCh10G007220Cucurbita maxima (Rimu)cmacmoB446
CmoCh10G007220Cucurbita maxima (Rimu)cmacmoB448
CmoCh10G007220Cucurbita maxima (Rimu)cmacmoB757
CmoCh10G007220Wild cucumber (PI 183967)cmocpiB041
CmoCh10G007220Wild cucumber (PI 183967)cmocpiB066
CmoCh10G007220Wild cucumber (PI 183967)cmocpiB070
CmoCh10G007220Cucumber (Chinese Long) v2cmocuB038
CmoCh10G007220Cucumber (Chinese Long) v2cmocuB065
CmoCh10G007220Cucumber (Chinese Long) v2cmocuB068
CmoCh10G007220Melon (DHL92) v3.5.1cmomeB050
CmoCh10G007220Melon (DHL92) v3.5.1cmomeB067
CmoCh10G007220Melon (DHL92) v3.5.1cmomeB072
CmoCh10G007220Watermelon (Charleston Gray)cmowcgB039
CmoCh10G007220Watermelon (Charleston Gray)cmowcgB049
CmoCh10G007220Watermelon (Charleston Gray)cmowcgB060
CmoCh10G007220Watermelon (Charleston Gray)cmowcgB066
CmoCh10G007220Watermelon (97103) v1cmowmB042
CmoCh10G007220Watermelon (97103) v1cmowmB048
CmoCh10G007220Watermelon (97103) v1cmowmB050
CmoCh10G007220Watermelon (97103) v1cmowmB059