CmoCh10G005550 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh10G005550
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr10 : 2506845 .. 2507257 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTCACACAGACTCCCACTCTTCCTTCTCCCACCATTACTCCTCCTCCTCCTCTTCCTTTTCCGGCCAAATTATCACAACCCTTTTCCTCTAATTATAACCCAAAACATCCCCTTTTTCCACCCATCCAAACACCCGCCACCGCCACCGCCACCGCCGCCCTCCGCCGACAAGGTTGTTTTGGATTCTTTATTTTTCTAATTATTTACTTCATGTTGCTGATGGGTTTGATTTGTTGGGTCTTGAAGAGGATCGAGGAGGATTTGGCGAGAGCTCGAGCGGAGATCCGAGAAGCCATTGTGCGGCGAAACTACACGTCGGAAATGGTGGAAAGCTTCATACCCAGAGGAAGGGTTTACAGAAACGCATACGCTTTCCATCAGTTAAGATTCCTCTGTCGCTTTTAA

mRNA sequence

ATGGCTTCCTCACACAGACTCCCACTCTTCCTTCTCCCACCATTACTCCTCCTCCTCCTCTTCCTTTTCCGGCCAAATTATCACAACCCTTTTCCTCTAATTATAACCCAAAACATCCCCTTTTTCCACCCATCCAAACACCCGCCACCGCCACCGCCACCGCCGCCCTCCGCCGACAAGAGGATCGAGGAGGATTTGGCGAGAGCTCGAGCGGAGATCCGAGAAGCCATTGTGCGGCGAAACTACACGTCGGAAATGGTGGAAAGCTTCATACCCAGAGGAAGGGTTTACAGAAACGCATACGCTTTCCATCAGTTAAGATTCCTCTGTCGCTTTTAA

Coding sequence (CDS)

ATGGCTTCCTCACACAGACTCCCACTCTTCCTTCTCCCACCATTACTCCTCCTCCTCCTCTTCCTTTTCCGGCCAAATTATCACAACCCTTTTCCTCTAATTATAACCCAAAACATCCCCTTTTTCCACCCATCCAAACACCCGCCACCGCCACCGCCACCGCCGCCCTCCGCCGACAAGAGGATCGAGGAGGATTTGGCGAGAGCTCGAGCGGAGATCCGAGAAGCCATTGTGCGGCGAAACTACACGTCGGAAATGGTGGAAAGCTTCATACCCAGAGGAAGGGTTTACAGAAACGCATACGCTTTCCATCAGTTAAGATTCCTCTGTCGCTTTTAA

Homology

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BLAST of CmoCh10G005550 vs. TrEMBL
Match: A0A0A0LTL1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G226410 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-15
Identity = 71/139 (51.08%), Postives = 77/139 (55.40%), Query Frame = 1


Query: 1   MASS----HRLPLFLLPP---LLLLLLFLFRPNYH-NPFPLIITQNIPFFHPSKHPPPPP 60
           MASS    H+L  FLL P   LLLLLL  F PN   NPF  I+++N+  FH SK P PP 
Sbjct: 1   MASSLEFPHKLSFFLLLPFFLLLLLLLCFFPPNDQINPFSSILSKNLFPFHSSKQPQPPL 60

Query: 61  PPPPSA--------------------------DKRIEEDLARARAEIREAIVRRNYTSEM 106
            PP S                            + IEE LA ARA IR AIV RNYTSE 
Sbjct: 61  SPPQSTLQFPPTTATATAPSQPQDYSSTRKKKSEMIEEGLAEARAAIRLAIVTRNYTSEK 120

[Close]

BLAST of CmoCh10G005550 vs. TrEMBL
Match: A5B846_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027319 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.1e-10
Identity = 37/47 (78.72%), Postives = 39/47 (82.98%), Query Frame = 1


Query: 60  KRIEEDLARARAEIREAIVRRNYTSEMVESFIPRGRVYRNAYAFHQL 107
           +RIEE LARARAEIR AI  RNYTSE  E+FIPRG VYRN YAFHQL
Sbjct: 98  ERIEEGLARARAEIRRAIRTRNYTSEKDEAFIPRGDVYRNPYAFHQL 144

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BLAST of CmoCh10G005550 vs. TrEMBL
Match: A5C335_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035918 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.1e-10
Identity = 37/47 (78.72%), Postives = 39/47 (82.98%), Query Frame = 1


Query: 60  KRIEEDLARARAEIREAIVRRNYTSEMVESFIPRGRVYRNAYAFHQL 107
           +RIEE LARARAEIR AI  RNYTSE  E+FIPRG VYRN YAFHQL
Sbjct: 440 ERIEEGLARARAEIRRAIRTRNYTSEKDEAFIPRGDVYRNPYAFHQL 486

[Close]

BLAST of CmoCh10G005550 vs. TrEMBL
Match: V7CCH5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G169600g PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-09
Identity = 38/54 (70.37%), Postives = 41/54 (75.93%), Query Frame = 1


Query: 61  RIEEDLARARAEIREAIVRRNYTSEMVESFIPRGRVYRNAYAFHQ--LRFLCRF 113
           RIEEDLA ARA IR AI RRN+TSE  E F+PRG VYRNAYAFHQ  +  L RF
Sbjct: 83  RIEEDLAEARAAIRRAIERRNFTSEKEEIFVPRGNVYRNAYAFHQSHIEMLKRF 136

[Close]

BLAST of CmoCh10G005550 vs. TrEMBL
Match: A0A059AYA0_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H01381 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-09
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 1


Query: 57  SADKRIEEDLARARAEIREAIVRRNYTSEMVESFIPRGRVYRNAYAFHQ 106
           S+ +R+E DLARARA IR+A+  RNYTS+  E+FIPRG +YRNAYAFHQ
Sbjct: 4   SSLRRVERDLARARAAIRDAVRARNYTSDKEETFIPRGAIYRNAYAFHQ 52

[Close]

BLAST of CmoCh10G005550 vs. TAIR10
Match: AT5G20260.1 (AT5G20260.1 Exostosin family protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06
Identity = 45/121 (37.19%), Postives = 64/121 (52.89%), Query Frame = 1


Query: 7   LPLFLLPPLLLLLLFLFRPNYHNPFPLIITQNIPFF--HPSKHPPPPP------------ 66
           + L L+P LLLLL+ L    +H+  P + +  +  F    S  P P P            
Sbjct: 1   MKLSLVPTLLLLLVLLVFYQHHSS-PNLNSNALSSFVDATSLAPSPSPSLSMEFSVASSN 60

Query: 67  ------PPPPSADKR--IEEDLARARAEIREAIVRRNYTSEMVESFIPRGRVYRNAYAFH 106
                 PP    +KR  IEE LA++R+ IREA+  + + S+  E+F+PRG VYRNA+AFH
Sbjct: 61  LSTISSPPENKGNKRNIIEEGLAKSRSAIREAVRLKKFVSDKEETFVPRGAVYRNAFAFH 120

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BLAST of CmoCh10G005550 vs. NCBI nr
Match: gi|778659929|ref|XP_011655344.1| (PREDICTED: probable glycosyltransferase At5g20260 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 71/139 (51.08%), Postives = 77/139 (55.40%), Query Frame = 1


Query: 1   MASS----HRLPLFLLPP---LLLLLLFLFRPNYH-NPFPLIITQNIPFFHPSKHPPPPP 60
           MASS    H+L  FLL P   LLLLLL  F PN   NPF  I+++N+  FH SK P PP 
Sbjct: 1   MASSLEFPHKLSFFLLLPFFLLLLLLLCFFPPNDQINPFSSILSKNLFPFHSSKQPQPPL 60

Query: 61  PPPPSA--------------------------DKRIEEDLARARAEIREAIVRRNYTSEM 106
            PP S                            + IEE LA ARA IR AIV RNYTSE 
Sbjct: 61  SPPQSTLQFPPTTATATAPSQPQDYSSTRKKKSEMIEEGLAEARAAIRLAIVTRNYTSEK 120

[Close]

BLAST of CmoCh10G005550 vs. NCBI nr
Match: gi|659086442|ref|XP_008443936.1| (PREDICTED: probable glycosyltransferase At5g20260 [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 4.5e-15
Identity = 70/141 (49.65%), Postives = 77/141 (54.61%), Query Frame = 1


Query: 1   MASS----HRLPLFLLPP---LLLLLLFLFRPNYH-NPFPLIITQNIPFFHPSKHPPPP- 60
           MASS    H+L  FLL P   LLLLLL  F PN   NPF  I+++N+  FH  K P  P 
Sbjct: 1   MASSFEFLHKLSFFLLLPFFLLLLLLLCFFPPNEQINPFSSILSKNLFLFHSFKQPQQPF 60

Query: 61  -------------------PPPPPS--------ADKRIEEDLARARAEIREAIVRRNYTS 106
                              PP PP           + IEE LA ARA IR+AIV RNYTS
Sbjct: 61  SPPQSTLQFPPATAPSAIIPPSPPQDYSSTRKKKSEMIEEGLAEARAAIRQAIVTRNYTS 120

[Close]

BLAST of CmoCh10G005550 vs. NCBI nr
Match: gi|147861785|emb|CAN82953.1| (hypothetical protein VITISV_027319 [Vitis vinifera])

HSP 1 Score: 72.0 bits (175), Expect = 7.4e-10
Identity = 37/47 (78.72%), Postives = 39/47 (82.98%), Query Frame = 1


Query: 60  KRIEEDLARARAEIREAIVRRNYTSEMVESFIPRGRVYRNAYAFHQL 107
           +RIEE LARARAEIR AI  RNYTSE  E+FIPRG VYRN YAFHQL
Sbjct: 98  ERIEEGLARARAEIRRAIRTRNYTSEKDEAFIPRGDVYRNPYAFHQL 144

[Close]

BLAST of CmoCh10G005550 vs. NCBI nr
Match: gi|147802493|emb|CAN64155.1| (hypothetical protein VITISV_035918 [Vitis vinifera])

HSP 1 Score: 72.0 bits (175), Expect = 7.4e-10
Identity = 37/47 (78.72%), Postives = 39/47 (82.98%), Query Frame = 1


Query: 60  KRIEEDLARARAEIREAIVRRNYTSEMVESFIPRGRVYRNAYAFHQL 107
           +RIEE LARARAEIR AI  RNYTSE  E+FIPRG VYRN YAFHQL
Sbjct: 440 ERIEEGLARARAEIRRAIRTRNYTSEKDEAFIPRGDVYRNPYAFHQL 486

[Close]

BLAST of CmoCh10G005550 vs. NCBI nr
Match: gi|658003782|ref|XP_008336981.1| (PREDICTED: probable glycosyltransferase At3g42180 [Malus domestica])

HSP 1 Score: 71.6 bits (174), Expect = 9.6e-10
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 1


Query: 60  KRIEEDLARARAEIREAIVRRNYTSEMVESFIPRGRVYRNAYAFHQ 106
           +RIEEDLA+ARA IREAI  RNYTSE  E+F+PRG +Y+N+YAFHQ
Sbjct: 18  ERIEEDLAKARAAIREAIQSRNYTSEREETFVPRGSIYKNSYAFHQ 63

The following BLAST results are available for this feature:

BLAST of CmoCh10G005550 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh10G005550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTL1_CUCSA	1.1e-15	51.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G226410 PE=4 SV=1	[more]
A5B846_VITVI	5.1e-10	78.72	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027319 PE=4 SV=1	[more]
A5C335_VITVI	5.1e-10	78.72	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035918 PE=4 SV=1	[more]
V7CCH5_PHAVU	1.1e-09	70.37	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G169600g PE=4 SV=1	[more]
A0A059AYA0_EUCGR	1.1e-09	67.35	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H01381 PE=4 ...	[more]

BLAST of CmoCh10G005550 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20260.1	1.4e-06	37.19	Exostosin family protein	[more]

BLAST of CmoCh10G005550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778659929\|ref\|XP_011655344.1\|	1.5e-15	51.08	PREDICTED: probable glycosyltransferase At5g20260 [Cucumis sativus]	[more]
gi\|659086442\|ref\|XP_008443936.1\|	4.5e-15	49.65	PREDICTED: probable glycosyltransferase At5g20260 [Cucumis melo]	[more]
gi\|147861785\|emb\|CAN82953.1\|	7.4e-10	78.72	hypothetical protein VITISV_027319 [Vitis vinifera]	[more]
gi\|147802493\|emb\|CAN64155.1\|	7.4e-10	78.72	hypothetical protein VITISV_035918 [Vitis vinifera]	[more]
gi\|658003782\|ref\|XP_008336981.1\|	9.6e-10	71.74	PREDICTED: probable glycosyltransferase At3g42180 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006486	protein glycosylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G005550.1	CmoCh10G005550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 59..79 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh10G005550	CmaCh10G005190	Cucurbita maxima (Rimu)	cmacmoB067
CmoCh10G005550	CsaV3_1G027900	Cucumber (Chinese Long) v3	cmocucB0054
CmoCh10G005550	CsaV3_2G003200	Cucumber (Chinese Long) v3	cmocucB0070
CmoCh10G005550	Bhi02G000778	Wax gourd	cmowgoB0070
CmoCh10G005550	Carg10926	Silver-seed gourd	carcmoB0772

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh10G005550	Cucurbita moschata (Rifu)	cmocmoB000
CmoCh10G005550	Cucurbita moschata (Rifu)	cmocmoB038
CmoCh10G005550	Cucurbita moschata (Rifu)	cmocmoB069
CmoCh10G005550	Cucumber (Gy14) v1	cgycmoB0694
CmoCh10G005550	Cucurbita maxima (Rimu)	cmacmoB099
CmoCh10G005550	Wild cucumber (PI 183967)	cmocpiB044
CmoCh10G005550	Cucumber (Chinese Long) v2	cmocuB041
CmoCh10G005550	Melon (DHL92) v3.5.1	cmomeB049
CmoCh10G005550	Watermelon (Charleston Gray)	cmowcgB064
CmoCh10G005550	Watermelon (Charleston Gray)	cmowcgB059
CmoCh10G005550	Watermelon (97103) v1	cmowmB049
CmoCh10G005550	Watermelon (97103) v1	cmowmB063
CmoCh10G005550	Cucurbita pepo (Zucchini)	cmocpeB050
CmoCh10G005550	Cucurbita pepo (Zucchini)	cmocpeB055
CmoCh10G005550	Cucurbita pepo (Zucchini)	cmocpeB068
CmoCh10G005550	Bottle gourd (USVL1VR-Ls)	cmolsiB045
CmoCh10G005550	Bottle gourd (USVL1VR-Ls)	cmolsiB060
CmoCh10G005550	Bottle gourd (USVL1VR-Ls)	cmolsiB070
CmoCh10G005550	Cucumber (Gy14) v2	cgybcmoB014
CmoCh10G005550	Melon (DHL92) v3.6.1	cmomedB052
CmoCh10G005550	Melon (DHL92) v3.6.1	cmomedB070
CmoCh10G005550	Silver-seed gourd	carcmoB0172
CmoCh10G005550	Silver-seed gourd	carcmoB0866
CmoCh10G005550	Cucumber (Chinese Long) v3	cmocucB0071
CmoCh10G005550	Watermelon (97103) v2	cmowmbB070
CmoCh10G005550	Watermelon (97103) v2	cmowmbB061
CmoCh10G005550	Watermelon (97103) v2	cmowmbB075