CmoCh10G005340 (gene) Cucurbita moschata (Rifu)

NameCmoCh10G005340
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr10 : 2413357 .. 2414844 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGAGTATGGACCATTGACAAGTAATCCCGAAAGAAACATCAAGCAGGTGTTGGTGGCTGTCGAAATGCTCCCGAAAGCACGGTAGAGAACTAGAGCAGGAATCGAGAGCAGCAGGAACGTTACTGATGTAACTGCACGGGCATCGATCAAATCAGATATTAATCCTGCTAATATTCCACCACAGACTCCTCCAATGTCGAAAATGGTTGAGAGGATGCCGGCCGTTTTATCAGATAAAATCACACCAGCAACAGCTATCACAACAAAGAAAAACTGTTGTCAGCAATTCAGACTTCAAAACTACATTTAGAACATGATTTCTACAGAATTTTGAACCTATTTGTCAGTTGTCCGCATTCAGTGTATCACTGAATTGGATTGAATGCCGTTACGATATTGTCTTCTTTGAACTTTCCCTCAAACTTTTCTTCAAGGTTTTTAAAACACATCTGCTAGAGAGAGGTTTCCACACCCTTATAAAGAATGTTTTGTTCTCCTCTCCAACCGATAAAGGTATGAAAACCTCGCCCTAATGTTTTAAAACCTTGAGGGAAAGTTCGGAAAGTCCAAAAAGAATAATATCAGCTAGTGGTGGGTTTGGACCGTTACAAATGGTATTAAAGCAAGACAGTGGACAATGTGTCAACGAGAAGGCTGAGCCCCAAAGGGGGTAGACACGAAGTGGTGTGCCAATAAAGATGCTGCGCCCCGAACGTGGTGGATTAGGGGGTCTCACATTGATTGGAGAAGAGGACGAGTGCTAGCGAGGACACTAAACCCCGAAGGGGAGTGGATTGTGAGATCCCACATCAGTTGAGAAGGAGAACGAAACATTTTTACAAGGGTGTGGAAACCTCTCCCTAGCAGATAGGTTTTAAAACCTGGGGGAAGCCCAAAAGTAGGGAAAGCTCAAATAGGACAATATCGTTACAAATCCATTCTAAAAAGATTCAAAGGATATTAACATTCCTTAGCGATAAGAAACAGGTACCTACCTGTGTGCCTAATGTAAAATGGCAACCAGTAGAGAAAAGTATAAGCGACAAGCTTCGAAAAGAAGAGACAAAAGGCAAATGGTGCAACACCCGGCAATCTCCACGCCTCTAAGAAACCAATAGCAGCCATAGAATCCAAATGCTCATCTTCAAGCAGCACAGCCACCTCTGACTCTGTGTTCTCCAGCTTTTCAACTGGACTGACCTCTGCGTTCAATTCAATCTCATTAACAGAGGTTCCAAATCCAATGTCTTCTGGACTCACAACCAGAAACAAGAACACCAAAATGCCAACGAAAATCACAAGAGCTCCAGGCACCACAAACGACCAACCCCAACCAAGTTCCAACATCCCAGAAGCTATAATCGACCCAATGATGTTTCCAACAGAAGTATGTGAATTCCAGATACCCATAATTAGCCCCCTCTTAGCTTTCCCAAACCAATTGCCTACAACTGCCACCACACATGGCCATCCAATTGACTGA

mRNA sequence

ATGAGTGAGTATGGACCATTGACAAGTAATCCCGAAAGAAACATCAAGCAGGTGTTGGTGGCTGTCGAAATGCTCCCGAAAGCACGCTTCGAAAAGAAGAGACAAAAGGCAAATGGTGCAACACCCGGCAATCTCCACGCCTCTAAGAAACCAATAGCAGCCATAGAATCCAAATGCTCATCTTCAAGCAGCACAGCCACCTCTGACTCTGTGTTCTCCAGCTTTTCAACTGGACTGACCTCTGCGTTCAATTCAATCTCATTAACAGAGGTTCCAAATCCAATGTCTTCTGGACTCACAACCAGAAACAAGAACACCAAAATGCCAACGAAAATCACAAGAGCTCCAGGCACCACAAACGACCAACCCCAACCAAGTTCCAACATCCCAGAAGCTATAATCGACCCAATGATGTTTCCAACAGAAGTATGTGAATTCCAGATACCCATAATTAGCCCCCTCTTAGCTTTCCCAAACCAATTGCCTACAACTGCCACCACACATGGCCATCCAATTGACTGA

Coding sequence (CDS)

ATGAGTGAGTATGGACCATTGACAAGTAATCCCGAAAGAAACATCAAGCAGGTGTTGGTGGCTGTCGAAATGCTCCCGAAAGCACGCTTCGAAAAGAAGAGACAAAAGGCAAATGGTGCAACACCCGGCAATCTCCACGCCTCTAAGAAACCAATAGCAGCCATAGAATCCAAATGCTCATCTTCAAGCAGCACAGCCACCTCTGACTCTGTGTTCTCCAGCTTTTCAACTGGACTGACCTCTGCGTTCAATTCAATCTCATTAACAGAGGTTCCAAATCCAATGTCTTCTGGACTCACAACCAGAAACAAGAACACCAAAATGCCAACGAAAATCACAAGAGCTCCAGGCACCACAAACGACCAACCCCAACCAAGTTCCAACATCCCAGAAGCTATAATCGACCCAATGATGTTTCCAACAGAAGTATGTGAATTCCAGATACCCATAATTAGCCCCCTCTTAGCTTTCCCAAACCAATTGCCTACAACTGCCACCACACATGGCCATCCAATTGACTGA
BLAST of CmoCh10G005340 vs. TrEMBL
Match: A0A0A9EJ97_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 44/79 (55.70%), Postives = 51/79 (64.56%), Query Frame = 1

Query: 95  MSSGLTTRNKNTKMPTKITRAPGTTNDQPQPSSNIPEAIIDPMMFPTEVCEFQIPIISPL 154
           ++SGLT +  NT  PTK     G  NDQP P+     A  +P MFP EVC F +PII+PL
Sbjct: 5   ITSGLTGKKLNTINPTKTMIRLGMANDQPHPNFRRKAASNEPAMFPIEVCAFHMPIINPL 64

Query: 155 LAFPNQLPTTATTHGHPID 174
           L  PNQ PTTATT GHPID
Sbjct: 65  LLLPNQFPTTATTEGHPID 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A9EJ97_ARUDO1.2e-1355.70Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G005340.1CmoCh10G005340.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh10G005340Wax gourdcmowgoB0049
CmoCh10G005340Wax gourdcmowgoB0068
CmoCh10G005340Wax gourdcmowgoB0070
CmoCh10G005340Cucurbita moschata (Rifu)cmocmoB000
CmoCh10G005340Cucurbita moschata (Rifu)cmocmoB038
CmoCh10G005340Cucurbita moschata (Rifu)cmocmoB069
CmoCh10G005340Cucumber (Gy14) v1cgycmoB0354
CmoCh10G005340Cucumber (Gy14) v1cgycmoB0743
CmoCh10G005340Cucumber (Gy14) v1cgycmoB0957
CmoCh10G005340Cucurbita maxima (Rimu)cmacmoB067
CmoCh10G005340Cucurbita maxima (Rimu)cmacmoB099
CmoCh10G005340Cucurbita maxima (Rimu)cmacmoB170
CmoCh10G005340Wild cucumber (PI 183967)cmocpiB051
CmoCh10G005340Wild cucumber (PI 183967)cmocpiB064
CmoCh10G005340Wild cucumber (PI 183967)cmocpiB071
CmoCh10G005340Cucumber (Chinese Long) v2cmocuB048
CmoCh10G005340Cucumber (Chinese Long) v2cmocuB062
CmoCh10G005340Cucumber (Chinese Long) v2cmocuB069
CmoCh10G005340Melon (DHL92) v3.5.1cmomeB049
CmoCh10G005340Melon (DHL92) v3.5.1cmomeB074
CmoCh10G005340Watermelon (Charleston Gray)cmowcgB064
CmoCh10G005340Watermelon (Charleston Gray)cmowcgB059
CmoCh10G005340Watermelon (97103) v1cmowmB049
CmoCh10G005340Watermelon (97103) v1cmowmB063
CmoCh10G005340Cucurbita pepo (Zucchini)cmocpeB055
CmoCh10G005340Cucurbita pepo (Zucchini)cmocpeB068
CmoCh10G005340Bottle gourd (USVL1VR-Ls)cmolsiB032
CmoCh10G005340Bottle gourd (USVL1VR-Ls)cmolsiB045
CmoCh10G005340Bottle gourd (USVL1VR-Ls)cmolsiB052
CmoCh10G005340Cucumber (Gy14) v2cgybcmoB014
CmoCh10G005340Cucumber (Gy14) v2cgybcmoB144
CmoCh10G005340Cucumber (Gy14) v2cgybcmoB442
CmoCh10G005340Melon (DHL92) v3.6.1cmomedB052
CmoCh10G005340Melon (DHL92) v3.6.1cmomedB079
CmoCh10G005340Silver-seed gourdcarcmoB0172
CmoCh10G005340Silver-seed gourdcarcmoB0354
CmoCh10G005340Silver-seed gourdcarcmoB0780
CmoCh10G005340Silver-seed gourdcarcmoB0866
CmoCh10G005340Cucumber (Chinese Long) v3cmocucB0054
CmoCh10G005340Cucumber (Chinese Long) v3cmocucB0068
CmoCh10G005340Cucumber (Chinese Long) v3cmocucB0071
CmoCh10G005340Cucumber (Chinese Long) v3cmocucB0077
CmoCh10G005340Watermelon (97103) v2cmowmbB070
CmoCh10G005340Watermelon (97103) v2cmowmbB061