CmoCh10G004710 (gene) Cucurbita moschata (Rifu)

NameCmoCh10G004710
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr10 : 2101349 .. 2101765 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTCCATCAGGGCTATTGCTGTTCTTTGCTTCGTGGTCTGTATGTCTGCGATTGAGTCACAAGGCCGTGTGGCCAGGAAGGACCTGGGTCTTGATCTTGGTGGCTTGGGAGTTGGCCTTGGTGTTGGCTTGGGCTTGGGCTTAGGCGGTGGAAGTGGAAGTGGCAGTGGCAGTGGAAGTGGCAGTGGAAGTGGCTCGGGTTCTGGTTCTGGATCGTATTCGTCGTCCCAGTCGTCAAGCTCTAGCTATGGAGGCTCCGGCGCAGGCTCAGAAGCTGGTTCCTACGCTGGCTCTTATGCTGGGTCACGTGGAGGCTCGGATTCGGGAAGGAATTACAGGAATGGTGGTTCGGGTTATGGGGAGGGTCGTGGCTATGGCGAGGGACGTGGATACGGCGAAGGCGGGAACAACTGA

mRNA sequence

ATGACTTCCATCAGGGCTATTGCTGTTCTTTGCTTCGTGGTCTGTATGTCTGCGATTGAGTCACAAGGCCGTGTGGCCAGGAAGGACCTGGGTCTTGATCTTGGTGGCTTGGGAGTTGGCCTTGGTGTTGGCTTGGGCTTGGGCTTAGGCGGTGGAAGTGGAAGTGGCAGTGGCAGTGGAAGTGGCAGTGGAAGTGGCTCGGGTTCTGGTTCTGGATCGTATTCGTCGTCCCAGTCGTCAAGCTCTAGCTATGGAGGCTCCGGCGCAGGCTCAGAAGCTGGTTCCTACGCTGGCTCTTATGCTGGGTCACGTGGAGGCTCGGATTCGGGAAGGAATTACAGGAATGGTGGTTCGGGTTATGGGGAGGGTCGTGGCTATGGCGAGGGACGTGGATACGGCGAAGGCGGGAACAACTGA

Coding sequence (CDS)

ATGACTTCCATCAGGGCTATTGCTGTTCTTTGCTTCGTGGTCTGTATGTCTGCGATTGAGTCACAAGGCCGTGTGGCCAGGAAGGACCTGGGTCTTGATCTTGGTGGCTTGGGAGTTGGCCTTGGTGTTGGCTTGGGCTTGGGCTTAGGCGGTGGAAGTGGAAGTGGCAGTGGCAGTGGAAGTGGCAGTGGAAGTGGCTCGGGTTCTGGTTCTGGATCGTATTCGTCGTCCCAGTCGTCAAGCTCTAGCTATGGAGGCTCCGGCGCAGGCTCAGAAGCTGGTTCCTACGCTGGCTCTTATGCTGGGTCACGTGGAGGCTCGGATTCGGGAAGGAATTACAGGAATGGTGGTTCGGGTTATGGGGAGGGTCGTGGCTATGGCGAGGGACGTGGATACGGCGAAGGCGGGAACAACTGA
BLAST of CmoCh10G004710 vs. TrEMBL
Match: A0A0A0LW94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G278490 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.5e-32
Identity = 115/139 (82.73%), Postives = 121/139 (87.05%), Query Frame = 1

Query: 1   MTSIRAIAVLCFVVCMSAIESQ-GRVARKDLGLDLGGLGVGLGVGLGLGLGGGSGSGSGS 60
           M SI+AIAVLC V+CMS IES+ GRVARKDLGLDLGGLGVGLG+GLGLGLGGG  SGSG+
Sbjct: 1   MASIKAIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGG--SGSGA 60

Query: 61  GSGSGSGSGSGSGSYSSSQSSSSSYGGSGAGSEAGSYAGSYAGSRGGSDSGRNYRNGGSG 120
           G+GSGSGSGSGS S SSS SSSSSYGGSGAGSEAGSYAGSYAGSR GS SG   RNG SG
Sbjct: 61  GAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGS--RNGASG 120

Query: 121 YGEGRGYGEGRGYGEGGNN 139
            GEG GYGEG GYGEGGNN
Sbjct: 121 -GEGHGYGEGHGYGEGGNN 134

BLAST of CmoCh10G004710 vs. TrEMBL
Match: A0A0A0LTK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G278500 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.0e-23
Identity = 102/152 (67.11%), Postives = 113/152 (74.34%), Query Frame = 1

Query: 1   MTSIRAIA-VLCFVVCMSAIESQGRVARKDLGLDLGGLGVGLGVGLGLGLGG-GSGSGSG 60
           M SI+++A V+C ++  SAI S+GRVARKDLG+DLGG+GVGLG G+GLG+GG GSGSGSG
Sbjct: 1   MASIKSLAIVVCLLLSFSAILSEGRVARKDLGIDLGGVGVGLGTGIGLGIGGSGSGSGSG 60

Query: 61  SGSGSGSGSGSGSGSYSSSQSSSSSYGGSGAGSEAGSYAGSYAGSRGGSDSGRNYRNGGS 120
           SGSGSGSGS S S SYSSS SS     GSGAGSEAGSYAGSYAGSR GS SG N RNGGS
Sbjct: 61  SGSGSGSGSSSSSSSYSSSSSS-----GSGAGSEAGSYAGSYAGSRAGSGSGGN-RNGGS 120

Query: 121 GYGEG---------------RGYGEGRGYGEG 136
           GYG G                GYGEG GYGEG
Sbjct: 121 GYGSGYGGGSGRGGGSNDNGEGYGEGHGYGEG 146

BLAST of CmoCh10G004710 vs. TrEMBL
Match: A0A0L9TCX8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan541s000500 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-20
Identity = 91/146 (62.33%), Postives = 106/146 (72.60%), Query Frame = 1

Query: 1   MTSIRAIAVLCFVVCMSAIESQGRVARKDLGLDLGGLGVGLGVGLGLGLGGGSGSGSGSG 60
           M + R+  +L  ++ +SAI S+ R  RKDLGLDLGGLGVGLGVGLGLG+GGGSGSG+G+G
Sbjct: 1   MAASRSSCLLALLLFVSAIASESRAVRKDLGLDLGGLGVGLGVGLGLGIGGGSGSGAGAG 60

Query: 61  SGSGSGSGSGSGSYSSSQSSSSSYGGSGAGSEAGSYAGSYAGS--------RGGSDSGRN 120
           +GSGSGSGS S S S+S SSSS  GGSGAGSEAGSYAGS AGS         GG   G  
Sbjct: 61  AGSGSGSGSSSASSSASSSSSSGSGGSGAGSEAGSYAGSRAGSGSGGRGGGGGGGGGGGG 120

Query: 121 YRNGGSGYGEGRGYGEGRGYGEGGNN 139
              GGSGYG G GYG G G+G+GG +
Sbjct: 121 GGGGGSGYGHGEGYGHGEGHGQGGGD 146

BLAST of CmoCh10G004710 vs. TrEMBL
Match: A0A0S3R811_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G469100 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-20
Identity = 91/146 (62.33%), Postives = 106/146 (72.60%), Query Frame = 1

Query: 1   MTSIRAIAVLCFVVCMSAIESQGRVARKDLGLDLGGLGVGLGVGLGLGLGGGSGSGSGSG 60
           M + R+  +L  ++ +SAI S+ R  RKDLGLDLGGLGVGLGVGLGLG+GGGSGSG+G+G
Sbjct: 1   MAASRSSCLLALLLFVSAIASESRAVRKDLGLDLGGLGVGLGVGLGLGIGGGSGSGAGAG 60

Query: 61  SGSGSGSGSGSGSYSSSQSSSSSYGGSGAGSEAGSYAGSYAGS--------RGGSDSGRN 120
           +GSGSGSGS S S S+S SSSS  GGSGAGSEAGSYAGS AGS         GG   G  
Sbjct: 61  AGSGSGSGSSSASSSASSSSSSGSGGSGAGSEAGSYAGSRAGSGSGGRGGGGGGGGGGGG 120

Query: 121 YRNGGSGYGEGRGYGEGRGYGEGGNN 139
              GGSGYG G GYG G G+G+GG +
Sbjct: 121 GGGGGSGYGHGEGYGHGEGHGQGGGD 146

BLAST of CmoCh10G004710 vs. TrEMBL
Match: A0A072UTB5_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g129770 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.0e-20
Identity = 91/134 (67.91%), Postives = 106/134 (79.10%), Query Frame = 1

Query: 9   VLCFVVCMSAIESQGRVARKDLGLDLGGLGVGLGVGLGLGLGGGSGS--GSGSGSGSGSG 68
           +L  +V MS IES+ RVARKDLGLDLGGLG+GLG G+GLG+GGGSGS  G+G+GSG+G+G
Sbjct: 9   LLAVLVLMSVIESESRVARKDLGLDLGGLGIGLGAGVGLGIGGGSGSGAGAGAGSGAGAG 68

Query: 69  SGSGSGSYSSSQSSSSSYGGSGAGSEAGSYAGSYAGSRGGSDSGRNYRNG--GSGYGEGR 128
           +GSGSGS SSS SSSSS   SG+GS AGS AGSYAGSR GS SG   R+G  G G G G 
Sbjct: 69  AGSGSGSSSSSSSSSSSSSSSGSGSGAGSEAGSYAGSRAGSGSGGRSRSGGRGGGGGGGG 128

Query: 129 GYGEGRGYGEGGNN 139
           GYG+G GYGEGG +
Sbjct: 129 GYGQGSGYGEGGGD 142

BLAST of CmoCh10G004710 vs. TAIR10
Match: AT4G30460.1 (AT4G30460.1 glycine-rich protein)

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-16
Identity = 79/149 (53.02%), Postives = 95/149 (63.76%), Query Frame = 1

Query: 6   AIAVLCFVVCMSAIESQGRVARKDLGLDLGGLGVGLGVGLGLGLGGGSGSGSGSGSGSGS 65
           ++ ++  ++  S + S+ RVARKDLGLDLGG+G G+G+G+G+G GGGSGSG+G+GSGSG 
Sbjct: 9   SLILITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIG-GGGSGSGAGAGSGSGG 68

Query: 66  GSGSGSGSYSSSQSSSSSYGGSGAGSEAGSYAGSYAGS-------------------RGG 125
           G  S S S SSS SSSS  GG  AGSEAGSYAGS+AGS                    GG
Sbjct: 69  GGSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGG 128

Query: 126 SDSGRNYRNGGSGYGEGRGYGEGRGYGEG 136
              G   R GG G G G GYGEG GYG G
Sbjct: 129 GGGGGGGRGGGGGSGNGEGYGEGGGYGGG 156

BLAST of CmoCh10G004710 vs. TAIR10
Match: AT4G30450.1 (AT4G30450.1 glycine-rich protein)

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-14
Identity = 69/111 (62.16%), Postives = 82/111 (73.87%), Query Frame = 1

Query: 1   MTSIRAIAVLCFVVCMSAIE-SQGRVARKDLGLDLGGLGVGLGVGLGLGLGGGSGSGSGS 60
           M     + +L  VV  S +  ++ R+ARKDLG+DLGG+G+GLGVGLG+GLGGGSGSG+G+
Sbjct: 1   MAKAEGLFLLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGA 60

Query: 61  GSGSGSGSGSGSGSYSSSQSSSSSYGGSGAGSEAGSYAGSYAGSRGGSDSG 111
           GSGSGSGS S S S SSS SSSS  GGS     AGS AGS+AGSR GS SG
Sbjct: 61  GSGSGSGSRSSSSSSSSSSSSSSGSGGS-----AGSSAGSFAGSRAGSGSG 106

BLAST of CmoCh10G004710 vs. NCBI nr
Match: gi|778660323|ref|XP_011656027.1| (PREDICTED: glycine-rich protein DOT1-like [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 5.0e-32
Identity = 115/139 (82.73%), Postives = 121/139 (87.05%), Query Frame = 1

Query: 1   MTSIRAIAVLCFVVCMSAIESQ-GRVARKDLGLDLGGLGVGLGVGLGLGLGGGSGSGSGS 60
           M SI+AIAVLC V+CMS IES+ GRVARKDLGLDLGGLGVGLG+GLGLGLGGG  SGSG+
Sbjct: 1   MASIKAIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGG--SGSGA 60

Query: 61  GSGSGSGSGSGSGSYSSSQSSSSSYGGSGAGSEAGSYAGSYAGSRGGSDSGRNYRNGGSG 120
           G+GSGSGSGSGS S SSS SSSSSYGGSGAGSEAGSYAGSYAGSR GS SG   RNG SG
Sbjct: 61  GAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGS--RNGASG 120

Query: 121 YGEGRGYGEGRGYGEGGNN 139
            GEG GYGEG GYGEGGNN
Sbjct: 121 -GEGHGYGEGHGYGEGGNN 134

BLAST of CmoCh10G004710 vs. NCBI nr
Match: gi|659086211|ref|XP_008443814.1| (PREDICTED: uncharacterized protein AFUA_6G14090-like [Cucumis melo])

HSP 1 Score: 146.0 bits (367), Expect = 5.0e-32
Identity = 113/139 (81.29%), Postives = 121/139 (87.05%), Query Frame = 1

Query: 1   MTSIRAIAVLCFVVCMSAIESQ-GRVARKDLGLDLGGLGVGLGVGLGLGLGGGSGSGSGS 60
           M SI+AI VLC V+CMS IES+ GRVARK+LGLDLGGLGVGLG+GLGLG+GGGSGSG+G+
Sbjct: 1   MASIKAIGVLCLVLCMSVIESEAGRVARKNLGLDLGGLGVGLGLGLGLGVGGGSGSGAGA 60

Query: 61  GSGSGSGSGSGSGSYSSSQSSSSSYGGSGAGSEAGSYAGSYAGSRGGSDSGRNYRNGGSG 120
           GSGSGSGSGSGS S SSS SSSSSYGGSGAGSEAGSYAGSYAGSR GS S R  RNG SG
Sbjct: 61  GSGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSDR--RNGASG 120

Query: 121 YGEGRGYGEGRGYGEGGNN 139
            GE  GYGEG GYGEGGNN
Sbjct: 121 -GEAHGYGEGHGYGEGGNN 136

BLAST of CmoCh10G004710 vs. NCBI nr
Match: gi|778660326|ref|XP_004146660.2| (PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-23
Identity = 102/152 (67.11%), Postives = 113/152 (74.34%), Query Frame = 1

Query: 1   MTSIRAIA-VLCFVVCMSAIESQGRVARKDLGLDLGGLGVGLGVGLGLGLGG-GSGSGSG 60
           M SI+++A V+C ++  SAI S+GRVARKDLG+DLGG+GVGLG G+GLG+GG GSGSGSG
Sbjct: 1   MASIKSLAIVVCLLLSFSAILSEGRVARKDLGIDLGGVGVGLGTGIGLGIGGSGSGSGSG 60

Query: 61  SGSGSGSGSGSGSGSYSSSQSSSSSYGGSGAGSEAGSYAGSYAGSRGGSDSGRNYRNGGS 120
           SGSGSGSGS S S SYSSS SS     GSGAGSEAGSYAGSYAGSR GS SG N RNGGS
Sbjct: 61  SGSGSGSGSSSSSSSYSSSSSS-----GSGAGSEAGSYAGSYAGSRAGSGSGGN-RNGGS 120

Query: 121 GYGEG---------------RGYGEGRGYGEG 136
           GYG G                GYGEG GYGEG
Sbjct: 121 GYGSGYGGGSGRGGGSNDNGEGYGEGHGYGEG 146

BLAST of CmoCh10G004710 vs. NCBI nr
Match: gi|659086209|ref|XP_008443813.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 4.2e-23
Identity = 101/151 (66.89%), Postives = 111/151 (73.51%), Query Frame = 1

Query: 1   MTSIRAIA-VLCFVVCMSAIESQGRVARKDLGLDLGGLGVGLGVGLGLGLGG-GSGSGSG 60
           M SI+++A V+C ++  S   S+GRVARKDLG+DLGGLGVGLG G+GLG+GG GSGSGSG
Sbjct: 1   MASIKSLALVVCLLLSFSVFLSEGRVARKDLGIDLGGLGVGLGAGIGLGIGGSGSGSGSG 60

Query: 61  SGSGSGSGSGSGSGSYSSSQSSSSSYGGSGAGSEAGSYAGSYAGSRGGSDSGRNYRNGGS 120
           SGSGSGSGS S S SYSSS SS     GSGAGSEAGSYAGSYAGSR GS SG N RNGGS
Sbjct: 61  SGSGSGSGSSSSSSSYSSSSSS-----GSGAGSEAGSYAGSYAGSRAGSGSGGN-RNGGS 120

Query: 121 GY--------------GEGRGYGEGRGYGEG 136
           GY              G G GYGEG GYGEG
Sbjct: 121 GYGSGYGGGSGRGGSNGNGEGYGEGHGYGEG 145

BLAST of CmoCh10G004710 vs. NCBI nr
Match: gi|659086207|ref|XP_008443812.1| (PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 93/148 (62.84%), Postives = 103/148 (69.59%), Query Frame = 1

Query: 1   MTSIRAIAVLCFVVCMSAIESQGRVARKDLGLDLGGLGVGLGVGLGLGLGGGSGSGSGSG 60
           M SIR +AV+ F++ +S I S+ RVARKDLGLDLGG+G+G+G G+GLGL          G
Sbjct: 1   MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGMGLGVGTGVGLGL---------DG 60

Query: 61  SGSGSGSGSGSGSYSSSQSSSSSYGGSGAGSEAGSYAGSYAGSRGGSDSGRNYR------ 120
           SGSG GSG GS S SSS SSSSS  GS AGSEAGSYAGSYAGSR GS SGRN        
Sbjct: 61  SGSGFGSGPGSSSASSSHSSSSS-SGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSG 120

Query: 121 ----NGGSGYGEGRGYGEGRGYGEGGNN 139
               NGG GYGEG GYGEG GYG GG N
Sbjct: 121 SGTGNGGEGYGEGHGYGEGHGYGNGGEN 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LW94_CUCSA3.5e-3282.73Uncharacterized protein OS=Cucumis sativus GN=Csa_1G278490 PE=4 SV=1[more]
A0A0A0LTK9_CUCSA1.0e-2367.11Uncharacterized protein OS=Cucumis sativus GN=Csa_1G278500 PE=4 SV=1[more]
A0A0L9TCX8_PHAAN1.8e-2062.33Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan541s000500 PE=4 SV=1[more]
A0A0S3R811_PHAAN1.8e-2062.33Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G469100 PE=... [more]
A0A072UTB5_MEDTR4.0e-2067.91Uncharacterized protein OS=Medicago truncatula GN=MTR_4g129770 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G30460.11.1e-1653.02 glycine-rich protein[more]
AT4G30450.12.9e-1462.16 glycine-rich protein[more]
Match NameE-valueIdentityDescription
gi|778660323|ref|XP_011656027.1|5.0e-3282.73PREDICTED: glycine-rich protein DOT1-like [Cucumis sativus][more]
gi|659086211|ref|XP_008443814.1|5.0e-3281.29PREDICTED: uncharacterized protein AFUA_6G14090-like [Cucumis melo][more]
gi|778660326|ref|XP_004146660.2|1.4e-2367.11PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis sativus][more]
gi|659086209|ref|XP_008443813.1|4.2e-2366.89PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo][more]
gi|659086207|ref|XP_008443812.1|1.1e-2062.84PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G004710.1CmoCh10G004710.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None