CmoCh10G003730 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh10G003730
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr10 : 1696907 .. 1698706 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCATTAATGATGCCGAGACTCCATTGATTTACTACATAGCAGAGTTAAACAGAGCTTCAGTTAAAGATGGGACTGGGAGGTGGGCTAGGGCAACATTTAAGATTGTTCTTTCCTTCCATGAGGTTTCTTTTTATGGGTGGCAAAAGCAGCCAGGCTTGAATACTGTTTAGGGGTAAGCTTATTTTAAGAAATTTACCATATGCAAGTACTATCGTATGAAATTAGGAGCTTTTGAAACTGAATGATTGTTAAGAACTTGTAATTTTTAGAAAACGTTTGAGAAGTTAGTTCTAGAGATACAATTGAAAATCATATGGCCTCCATACAAAGTGAAACTTTCGTCTTGAGGACAATGTCCAAATTAAGTCGATCAACCTTGTTAATCTAACCTTTCTGGTACTGTATCTTTTCTTCCATTATGTGGTTTAAAGTAATATTTTAATATCTTTAGATGTATAAACAGTTTGATTTCAATCTAGAGACAGCAAACGCTGCTTTTATATTGGAAGGTTATGTTTACTTGTATCCTTTGGCAGCTTGGTATAAAGATCTCTAGGGAAGTTTGTAGATGAGAAGAAAGCTCAGCTGCTGAGAGATAGGTGCTTACCAACAGTAGGATGTGCTGTGGGTTGCTTGCTGGGCGCACTGACAAAGGGGTGACAGCTCTGCGACACGGTTTATTCTGTATGTTGGCTTCTTAATCTCTGTTGACATGAATTTTTGCTTGGAGATTGAATTTCATTACTCTTCCTTGATTTTCTTAGATTCTATCTCAGCTTAAAAATGAACTCATATGTTAGAATAAATTTTATCTTATATATTATTTATTGACTTCTTTAATAGTTGTGATGAATAGACATGACTTGATTGTCATATCCGTTTTCTGAAATCCACTTTTGTTGTGCTTCACTAAAACACTCAAATAGTCAAATAGGTGTCTTTGTCCCGACTGCTCTATGCCCAAAGTGTTGGAAGGGTATGTCAAATAACTTGTGAGAATGATGAGGACCTTGTGTCGGCTGATAAGCCTCAAACGTTTAGTGTAAGGAGGGTCAACCAACTACTTAGGAAACGAGAAGGAAAGTTATTGTCGTACAAGATGTTTGCACGTGACACCAAAGCATCATGAAATGAGTGAGAATCATGAATTTTACCAATTATTTGCTCCTTTTTTGGAAGTTATTCTAGCTTCTAGTTTAAGTATCATAATTCTTTTTCTTTTTGGTTTAATTCTATTTATTGCTTTCTTCTCATAAAGACATTTCTTCTTATTCTGTTTTTGTTTTAATTCTATTGAGCCAATATGAAGTTTATGTTGCATAATAGGAATTATTGTAATAGAGGTTGGAGTTTTGATTCAAACTATATTCAGCCAATTAGTGTATTATTGACAGGACCGAGTAGGAAGATGTGTTTGTGTTGAGCTGGTTGGTTGCCAATTGCTTCTTGCAGAAGGTATCGTCTCTGGGGTTGCCTATGCTGAAGACTATATTGTACCGAACGTAAAATTGGTCTAATTAGATTTGGGTAATCCGTTCTCCAACTGCTTAAAATGGAGGGTTAACATCTTATACATCGGCAAGGGAATTTCCCTTCCGTTTTAGCAATGGTGATACAACCATTAGGCCGTAAATGGCTCTTTCACGTTTACATGACACTAATTATTATGTCTTCTGTGGAATCCTTGTCCTTCAGCAGTTCAGCCAATTATAATGGAACGTAATGTAAGGATGACCTTGCAGATGGTACGGGTGCTTGTTGCGACAGCAATTAGAGAGGCAGTTGCTGGTGCTTGA

mRNA sequence

ATGATCATTAATGATGCCGAGACTCCATTGATTTACTACATAGCAGAGTTAAACAGAGCTTCAGTTAAAGATGGGACTGGGAGGTGGGCTAGGGCAACATTTAAGATTGTTCTTTCCTTCCATGAGGACCGAGTAGGAAGATGTGTTTGTGTTGAGCTGGTTGGTTGCCAATTGCTTCTTGCAGAAGTTCAGCCAATTATAATGGAACGTAATGTAAGGATGACCTTGCAGATGGTACGGGTGCTTGTTGCGACAGCAATTAGAGAGGCAGTTGCTGGTGCTTGA

Coding sequence (CDS)

ATGATCATTAATGATGCCGAGACTCCATTGATTTACTACATAGCAGAGTTAAACAGAGCTTCAGTTAAAGATGGGACTGGGAGGTGGGCTAGGGCAACATTTAAGATTGTTCTTTCCTTCCATGAGGACCGAGTAGGAAGATGTGTTTGTGTTGAGCTGGTTGGTTGCCAATTGCTTCTTGCAGAAGTTCAGCCAATTATAATGGAACGTAATGTAAGGATGACCTTGCAGATGGTACGGGTGCTTGTTGCGACAGCAATTAGAGAGGCAGTTGCTGGTGCTTGA
Homology
[Close]
BLAST of CmoCh10G003730 vs. TrEMBL
Match: A0A0A0LV59_CUCSA (tRNA pseudouridine synthase OS=Cucumis sativus GN=Csa_1G025830 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-08
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1 

Query: 4   NDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSF 41
           +DAETPLIY  AELNRA+VKD TGRWARATFKIVLS+
Sbjct: 90  DDAETPLIYNSAELNRAAVKDKTGRWARATFKIVLSY 126

[Close]
BLAST of CmoCh10G003730 vs. NCBI nr
Match: gi|659107096|ref|XP_008453520.1| (PREDICTED: uncharacterized protein LOC103494203 [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 8.9e-09
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1 

Query: 4   NDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFH 42
           +DAETPLIY  AELNRA+VKD TGRWARA FKIVLS+H
Sbjct: 90  DDAETPLIYNSAELNRAAVKDKTGRWARANFKIVLSYH 127

[Close]
BLAST of CmoCh10G003730 vs. NCBI nr
Match: gi|449439176|ref|XP_004137363.1| (PREDICTED: uncharacterized protein LOC101205562 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 2.6e-08
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1 

Query: 4   NDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSF 41
           +DAETPLIY  AELNRA+VKD TGRWARATFKIVLS+
Sbjct: 90  DDAETPLIYNSAELNRAAVKDKTGRWARATFKIVLSY 126

The following BLAST results are available for this feature:
BLAST of CmoCh10G003730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh10G003730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LV59_CUCSA1.8e-0883.78tRNA pseudouridine synthase OS=Cucumis sativus GN=Csa_1G025830 PE=3 SV=1[more]
BLAST of CmoCh10G003730 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh10G003730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659107096|ref|XP_008453520.1|8.9e-0981.58PREDICTED: uncharacterized protein LOC103494203 [Cucumis melo][more]
gi|449439176|ref|XP_004137363.1|2.6e-0883.78PREDICTED: uncharacterized protein LOC101205562 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0008033 tRNA processing
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G003730.1CmoCh10G003730.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh10G003730Cp4.1LG18g06710Cucurbita pepo (Zucchini)cmocpeB055
CmoCh10G003730Carg15191Silver-seed gourdcarcmoB1063
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh10G003730Silver-seed gourdcarcmoB0806
CmoCh10G003730Cucumber (Chinese Long) v3cmocucB0046
CmoCh10G003730Watermelon (97103) v2cmowmbB070
CmoCh10G003730Wax gourdcmowgoB0071
CmoCh10G003730Cucurbita moschata (Rifu)cmocmoB038
CmoCh10G003730Cucumber (Gy14) v1cgycmoB0255
CmoCh10G003730Cucurbita maxima (Rimu)cmacmoB067
CmoCh10G003730Cucurbita maxima (Rimu)cmacmoB099
CmoCh10G003730Wild cucumber (PI 183967)cmocpiB042
CmoCh10G003730Cucumber (Chinese Long) v2cmocuB039
CmoCh10G003730Melon (DHL92) v3.5.1cmomeB059
CmoCh10G003730Watermelon (Charleston Gray)cmowcgB064
CmoCh10G003730Watermelon (97103) v1cmowmB063
CmoCh10G003730Cucurbita pepo (Zucchini)cmocpeB068
CmoCh10G003730Bottle gourd (USVL1VR-Ls)cmolsiB061
CmoCh10G003730Cucumber (Gy14) v2cgybcmoB007
CmoCh10G003730Melon (DHL92) v3.6.1cmomedB062