CmoCh10G001560 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh10G001560
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr10 : 710539 .. 712278 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGTCTTTTTAGTTTATTGCAATCTTTGCCAATACCATCGCATCGTCCTGTGTCTGTATGTCTTCCGCCCTCCTATGTTGTCGCAGAAAAGAAATCCAGATGATGGAGATGGTCCGGCGGATGGTGACAATCCCGATGATAAGCGTAGAAAATTCCGTTTCTGGAGGTACTACACGCTGCTTCTCGCTCTTTTACTCTTTTATTTCACTGTTTTGTGGGACTGTTCTTAAGTTTCCTTGTTGATTGTGGGGGTTCTCTGTAATTTCTCCTTGAGTTTCATTGCCAATGCTAATTTATGTTTAGAATTGGAAGTAGGAACGTGGTGCGATCTGGCTTCTTTGGTTCAATTGAATTTTGGGAGAACTGTTTGTATGGTATCCTACATGAGTTGGTAAGCGAGCTGATGATTCATGTTTAAGTTCTTTTGGGTGGATTCTAGAGACTACTCTGACGAGATGAAAATGATGCATTTATGTGGGGCATCATAATGAGTGCGAGCCTAAAGGGACGAGTATTTGCAATTGAGTTTGTTTGAGATTCCCCTAAAGAACAAAGTTGGCTTGAAGAAGCTGTCAGGCATGATCTTGTTGGAGTAGGTTGGACTCCCTCAGATTAGTTGCAACTTAGAGAAGAACTAGTTAACCCTTGGACAGGCTAATATAGACCAATCTCTAGACAGAAATGGTTGGGGGAGGCGGGGGATGGCATTTAATTTCTGGAGGAGGATCACTTGATTTTGATTAGAGAGGGCTCTCTTGCCACCATTTTCTCGAAAAAGCACTTGATTATTTCGTCCCTTACTAGGTGAATCTCCTTCCATTTCCCAACTTTCATTTTTGGAGACCCCTCTTTGAATGGGAAGCCATGAATTTTTTCACCACGATTTCCTTATTATATAGAGTTCATCTCATTCCAAATTTTAGTTATTAATATATGTGGACGCTCAAACTATCGAAGCGTTGTTCTCTCATAAATCTTTCTTTTCTCGTTTTTCTGCACGTTCTACCCTTCTCCTCTCCTGCGAAGCCCTAGAAAGATGAAAATTCCGAAGAAGGTTAAGTTTTTTTCTTGATGAATTGATTTGGATCCTCGGGCTATGCTTTGATGTATAGGAGGGCTTCAGAAGATTTGAATTTTATGGAGATGTCTTTGCTATAGAAATTGGGATACATTGCTCGAGACATTCGGTATTAGCTTGGCTCAAAGTAGATGTTTACTAGATATGATGGAAGAGGTGGCTAGGACTCTTCCTATCTTGATTATATTAAGGCAAAGTATGTTGCCAATAGTTCTTGGAACCTCAAGACCTTCCTTCAACCAGTATATTCTTGTTGTGGCCTTATGACTGCTATAAGAAAGCCTTTATGAGTCTTGAATGTCCATTTCTTGTGTATGTATTGAATGCAATGTTATTTATTCATCAATGAATTTTTTTTTTCTCTTTTAAAAAAAAAATTCTCATCACTTGATATGATGTTTTATCTTTGGTAATGTACAGTGTGATTCAGGATGCCCCATCATTGCAATCAATGCAACAGCTATTGGAGCCACTCATTCGTAAAGTGGTAAGCATGATCACTCCAGGAAATATGTTTAATGCATTGTTTTATCAATGGGAAATTGTTCCATTGCTGTTGAAAATGCATGATTGGACTGGATGTCTAAGCCCTTACCAAATTATTGAGGACGTTTTCCTATTTTTCTGGATAAAGAGAAAGGACCGTTGTAAAATATAA

mRNA sequence

ATGTTAGTCTTTTTAGTTTATTGCAATCTTTGCCAATACCATCGCATCGTCCTGTGTCTGTATGTCTTCCGCCCTCCTATGTTGTCGCAGAAAAGAAATCCAGATGATGGAGATGGTCCGGCGGATGGTGACAATCCCGATGATAAGCGTAGAAAATTCCGTTTCTGGAGAAATTGGGATACATTGCTCGAGACATTCGGTATTAGCTTGGCTCAAAGTAGATGTTTACTAGATATGATGGAAGAGGTGGCTAGGACTCTTCCTATCTTGATTATATTAAGGCAAAGTATGTTGCCAATAGTTCTTGGAACCTCAAGACCTTCCTTCAACCATGTGATTCAGGATGCCCCATCATTGCAATCAATGCAACAGCTATTGGAGCCACTCATTCGTAAAGTGGTAAGCATGATCACTCCAGGAAATATGTTTAATGCATTGTTTTATCAATGGGAAATTGTTCCATTGCTGTTGAAAATGCATGATTGGACTGGATGTCTAAGCCCTTACCAAATTATTGAGGACGTTTTCCTATTTTTCTGGATAAAGAGAAAGGACCGTTGTAAAATATAA

Coding sequence (CDS)

ATGTTAGTCTTTTTAGTTTATTGCAATCTTTGCCAATACCATCGCATCGTCCTGTGTCTGTATGTCTTCCGCCCTCCTATGTTGTCGCAGAAAAGAAATCCAGATGATGGAGATGGTCCGGCGGATGGTGACAATCCCGATGATAAGCGTAGAAAATTCCGTTTCTGGAGAAATTGGGATACATTGCTCGAGACATTCGGTATTAGCTTGGCTCAAAGTAGATGTTTACTAGATATGATGGAAGAGGTGGCTAGGACTCTTCCTATCTTGATTATATTAAGGCAAAGTATGTTGCCAATAGTTCTTGGAACCTCAAGACCTTCCTTCAACCATGTGATTCAGGATGCCCCATCATTGCAATCAATGCAACAGCTATTGGAGCCACTCATTCGTAAAGTGGTAAGCATGATCACTCCAGGAAATATGTTTAATGCATTGTTTTATCAATGGGAAATTGTTCCATTGCTGTTGAAAATGCATGATTGGACTGGATGTCTAAGCCCTTACCAAATTATTGAGGACGTTTTCCTATTTTTCTGGATAAAGAGAAAGGACCGTTGTAAAATATAA
Homology
[Close]
BLAST of CmoCh10G001560 vs. TrEMBL
Match: A0A0A0LP80_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G005690 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.0e-18
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 1 

Query: 1  MLVFLVYCNLCQYHRIVLCLYVFRPPMLSQKRNPDDGDGPADGDNPDDKRRKFRF 56
          M VFLV+CNL Q+HRIVLCLYV  PPMLSQKRNPDDGDGPADGDNPDDKRRKF F
Sbjct: 1  MWVFLVHCNLRQFHRIVLCLYVLWPPMLSQKRNPDDGDGPADGDNPDDKRRKFCF 55

[Close]
BLAST of CmoCh10G001560 vs. NCBI nr
Match: gi|700208512|gb|KGN63608.1| (hypothetical protein Csa_1G005690 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 4.3e-18
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 1 

Query: 1  MLVFLVYCNLCQYHRIVLCLYVFRPPMLSQKRNPDDGDGPADGDNPDDKRRKFRF 56
          M VFLV+CNL Q+HRIVLCLYV  PPMLSQKRNPDDGDGPADGDNPDDKRRKF F
Sbjct: 1  MWVFLVHCNLRQFHRIVLCLYVLWPPMLSQKRNPDDGDGPADGDNPDDKRRKFCF 55

[Close]
BLAST of CmoCh10G001560 vs. NCBI nr
Match: gi|449440702|ref|XP_004138123.1| (PREDICTED: uncharacterized protein LOC101211405 isoform X1 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 4.3e-18
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 1 

Query: 1  MLVFLVYCNLCQYHRIVLCLYVFRPPMLSQKRNPDDGDGPADGDNPDDKRRKFRF 56
          M VFLV+CNL Q+HRIVLCLYV  PPMLSQKRNPDDGDGPADGDNPDDKRRKF F
Sbjct: 1  MWVFLVHCNLRQFHRIVLCLYVLWPPMLSQKRNPDDGDGPADGDNPDDKRRKFCF 55

[Close]
BLAST of CmoCh10G001560 vs. NCBI nr
Match: gi|778655751|ref|XP_011658736.1| (PREDICTED: uncharacterized protein LOC101211405 isoform X2 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 4.3e-18
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 1 

Query: 1  MLVFLVYCNLCQYHRIVLCLYVFRPPMLSQKRNPDDGDGPADGDNPDDKRRKFRF 56
          M VFLV+CNL Q+HRIVLCLYV  PPMLSQKRNPDDGDGPADGDNPDDKRRKF F
Sbjct: 1  MWVFLVHCNLRQFHRIVLCLYVLWPPMLSQKRNPDDGDGPADGDNPDDKRRKFCF 55

[Close]
BLAST of CmoCh10G001560 vs. NCBI nr
Match: gi|659105559|ref|XP_008453126.1| (PREDICTED: uncharacterized protein LOC103493934 isoform X2 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 3.6e-17
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 1 

Query: 1  MLVFLVYCNLCQYHRIVLCLYVFRPPMLSQKRNPDDGDGPADGDNPDDKRRKFRF 56
          M VFLV+CNL Q+HRIVLCLYV  PPMLSQKRNPDDGDG ADGDNPDDKRRKF F
Sbjct: 1  MWVFLVHCNLRQFHRIVLCLYVLWPPMLSQKRNPDDGDGSADGDNPDDKRRKFCF 55

[Close]
BLAST of CmoCh10G001560 vs. NCBI nr
Match: gi|659105563|ref|XP_008453127.1| (PREDICTED: uncharacterized protein LOC103493934 isoform X3 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 3.6e-17
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 1 

Query: 1  MLVFLVYCNLCQYHRIVLCLYVFRPPMLSQKRNPDDGDGPADGDNPDDKRRKFRF 56
          M VFLV+CNL Q+HRIVLCLYV  PPMLSQKRNPDDGDG ADGDNPDDKRRKF F
Sbjct: 1  MWVFLVHCNLRQFHRIVLCLYVLWPPMLSQKRNPDDGDGSADGDNPDDKRRKFCF 55

The following BLAST results are available for this feature:
BLAST of CmoCh10G001560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh10G001560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LP80_CUCSA3.0e-1887.27Uncharacterized protein OS=Cucumis sativus GN=Csa_1G005690 PE=4 SV=1[more]
BLAST of CmoCh10G001560 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh10G001560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208512|gb|KGN63608.1|4.3e-1887.27hypothetical protein Csa_1G005690 [Cucumis sativus][more]
gi|449440702|ref|XP_004138123.1|4.3e-1887.27PREDICTED: uncharacterized protein LOC101211405 isoform X1 [Cucumis sativus][more]
gi|778655751|ref|XP_011658736.1|4.3e-1887.27PREDICTED: uncharacterized protein LOC101211405 isoform X2 [Cucumis sativus][more]
gi|659105559|ref|XP_008453126.1|3.6e-1785.45PREDICTED: uncharacterized protein LOC103493934 isoform X2 [Cucumis melo][more]
gi|659105563|ref|XP_008453127.1|3.6e-1785.45PREDICTED: uncharacterized protein LOC103493934 isoform X3 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G001560.1CmoCh10G001560.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh10G001560Lsi06G015240Bottle gourd (USVL1VR-Ls)cmolsiB058
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh10G001560Melon (DHL92) v3.6.1cmomedB042
CmoCh10G001560Melon (DHL92) v3.6.1cmomedB045
CmoCh10G001560Melon (DHL92) v3.6.1cmomedB060
CmoCh10G001560Melon (DHL92) v3.6.1cmomedB072
CmoCh10G001560Silver-seed gourdcarcmoB0493
CmoCh10G001560Silver-seed gourdcarcmoB0667
CmoCh10G001560Silver-seed gourdcarcmoB0837
CmoCh10G001560Silver-seed gourdcarcmoB1345
CmoCh10G001560Cucumber (Chinese Long) v3cmocucB0044
CmoCh10G001560Cucumber (Chinese Long) v3cmocucB0061
CmoCh10G001560Cucumber (Chinese Long) v3cmocucB0083
CmoCh10G001560Watermelon (97103) v2cmowmbB071
CmoCh10G001560Watermelon (97103) v2cmowmbB040
CmoCh10G001560Watermelon (97103) v2cmowmbB064
CmoCh10G001560Wax gourdcmowgoB0048
CmoCh10G001560Wax gourdcmowgoB0081
CmoCh10G001560Cucurbita moschata (Rifu)cmocmoB039
CmoCh10G001560Cucurbita moschata (Rifu)cmocmoB051
CmoCh10G001560Cucurbita moschata (Rifu)cmocmoB057
CmoCh10G001560Cucurbita moschata (Rifu)cmocmoB065
CmoCh10G001560Cucurbita moschata (Rifu)cmocmoB073
CmoCh10G001560Cucumber (Gy14) v1cgycmoB0201
CmoCh10G001560Cucumber (Gy14) v1cgycmoB0575
CmoCh10G001560Cucurbita maxima (Rimu)cmacmoB067
CmoCh10G001560Cucurbita maxima (Rimu)cmacmoB100
CmoCh10G001560Cucurbita maxima (Rimu)cmacmoB208
CmoCh10G001560Cucurbita maxima (Rimu)cmacmoB388
CmoCh10G001560Wild cucumber (PI 183967)cmocpiB040
CmoCh10G001560Wild cucumber (PI 183967)cmocpiB056
CmoCh10G001560Cucumber (Chinese Long) v2cmocuB037
CmoCh10G001560Cucumber (Chinese Long) v2cmocuB057
CmoCh10G001560Melon (DHL92) v3.5.1cmomeB041
CmoCh10G001560Melon (DHL92) v3.5.1cmomeB057
CmoCh10G001560Watermelon (Charleston Gray)cmowcgB037
CmoCh10G001560Watermelon (Charleston Gray)cmowcgB040
CmoCh10G001560Watermelon (Charleston Gray)cmowcgB065
CmoCh10G001560Watermelon (97103) v1cmowmB054
CmoCh10G001560Watermelon (97103) v1cmowmB036
CmoCh10G001560Watermelon (97103) v1cmowmB064
CmoCh10G001560Cucurbita pepo (Zucchini)cmocpeB043
CmoCh10G001560Cucurbita pepo (Zucchini)cmocpeB055
CmoCh10G001560Cucurbita pepo (Zucchini)cmocpeB058
CmoCh10G001560Cucurbita pepo (Zucchini)cmocpeB070
CmoCh10G001560Bottle gourd (USVL1VR-Ls)cmolsiB041
CmoCh10G001560Cucumber (Gy14) v2cgybcmoB005
CmoCh10G001560Cucumber (Gy14) v2cgybcmoB021
CmoCh10G001560Cucumber (Gy14) v2cgybcmoB554