CmoCh10G000740 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh10G000740
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description1,3-beta-glucan synthase component bgs3, putative, expressed
LocationCmo_Chr10 : 341273 .. 345594 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGGCAGGGCCATGGGAGGACTCCCTGTGGGATTGTTGGAGCTGTACGATCCTGACTCTATATTGCTGTCTGCCGATGAAATCCAAGCGGAGGACTCCAATGTTGCTAGGATTTGTAAGCATTTCGGCTCTCATCCCTTATGTTTTTTTTTTTTTTTTTTTTTTCCTTTTTTCAGAACTTCGACATGGGCGTTGAGTTGGGTACCTTAAAAGTTAGATTTCTCCGATGTTAAATCACTGATGAACCCTAAAGCTTAAGCCAATGGATTAGATAAATATAATTATATTAATACTTCAACAAAAGGTTTTGTGATTTGTGGATCACCTTGAAGGGGTATTGATCATCCAATTACCCCACTATTAAAGGTGTTTTAAATCATCGATTTGATGCTCGAGGACTGTGTTGTTATTTATTTAGTGTGTAACATAGAGCTGCTGCTTCAATTGCTGAGAGGTGAAATGTCTTCCTCATCCAGCTATCCTTAACTTTTGTACTTGTGTTAGATCCACAATGTTCATGTAAACTTTTCAGAGTCCGAATGCATTATGGGCATCCTGATGTGTTTGACCGTATACTCGAGGTGGTATTTGCAACGGATTAAGCGTAACAATTCAAGTCCACTGCTAGTAGATATTGTCCAATTTGGCTCATATATTACCGTCAGCCTCACAATTTTCCACATTCTTATAAAGAATAATTTGTTCTCCTCTACCACTGATGTGGGATCTCACAATCCACTTCCTTGGGACCAACATCCTCGTTGGCACATGGTTTGGTGTTTGACTCTAATACTATTTGTAATAACCTAAGCCCACCACTAGTAGATATTATCCTCTTTAGCCTGTTACGTATCGTCGTCAGTCTCACAGTTTTAAATCGAGTCTGTTAGGGAGAGGTTTTCACACTTTTATAATAAATGTTTTGTTCTGTTCTCTTAATCTGATCAAAGAGATATACAGCTGGTCATTTATTATGGAATTCTATTGATTTCTTACGGCATTAATTTTACTAATTCGCAGACTATTTATTCTTTCACTCTTGAACGAGGGAGGCAGGGTAGCATTACAAACCACAAGTACATTCTGGTTTGATATCATTATTTGCCTTTGGATTTTTTATGATCAACTACTCTGTTAAGGTTGGAAAAGGAAGGGATGTTGGGTTAAACCAAATTGGCCTGTTTGAAGGGAAAGTATCAGGTGGTAATGAAGAGAAAATTCTCAGAAGGGATGCTTACAGGCTTGGCAACCTTTTGTTTTCTTCAGAATGCTATCGTCTTATTTCACAACTGTTAGTTACTATGCATGCTCAATGGTTGGTTCAATTCCATTTCTTCTCTGTTCCAATATATTGTAACCCAATGCAATTGATTTTGCTGATGTCTGGAGCTTTTTCCTCACAAAATTCTTTTTGTTTATTGCAGATGACAGTTCTTTGTTCACGATGGGTGATGGGTTGAGAAAGGAGTCTCACATCCCCTAATTAAGGGGTTGAGCATGGATTTATAAGGAAGAAATACATCTTCGTTGACATGAGGCATTTTGAGGAAACCAATAACAAAGTCACAAGAGTTTATGCTCAAAGTGGATAATATCATACCATCGTGGAGAATCGTAGTTCCTAACATTCTTGTGGTTTATATTTTCTTGTGTGGACGGGTTTACTTGGTATTGACATTTTACACATCCATGCATGACATAATTCTCTTACAAATCTATGAATATTCATTCTTAGGAGAAATATTCATGACCATTAGGACAGAAAAAAATTTGTTCCGTCTATGAGTATATTTTGGGCCCTCTGTTTTTTATGTAATATTTCAATTATTAGGTGCCTTTCATGGATTTATTTTTGATTGATTTTACTTTATAATGTCATCAAGTCTTAGGAAACCTTATTTGTGCTTGTAATTTTCCTAGTGAAGATGTACATACTATAGATTCATGCTTCTATATCTGTGTTAATAATCTATACATCGCCATACAACATCAATTTATCAAATACTGTTACTTATGTTCGAAGTTTGATTAGTTAAGTTTCTTCGTGTTCAATACTGACTTGTTGAGTTTCCTCCTATAGTATGTTCAAAGATCGATTGGTTGTGAAAGAGAAATCAATTTGTCTTAAAAAAATTTCAGGCCTTCGCCGGAGATGACGAAGCAATCTCAAGAAGAGCAAGGATGTCGGGAAGCACAGCATTGGATACGGCACTGAATGCTCGGTTTTTGTTCCAGATTCGAGTTTTTACAGCAATCCCTTTGATAATCGGTTTTTGTACTTCAACTTGGACTGCTCAAGGTAGTGTATCTATCCATTCATTTTTTTCTAGGAAAGATTTAAGCAAGATCTTAGATCTCCTTATTGAATTCGCCATACCTTTTGACAACATGTTATCTACTCATTTGGTAGTCTTAAGGATATGGGAGAAAAAAAACTATGCTAAATCTCATTCTCCCGCCAAATTTCATCTGGAGTTTAGCTCACAGTAGAATTATACTCAAAATTTTCTAGTGTCATGGACTTCATCACCCAGTTGATCCAACCATGGCCATGAGGCGACTAGACCAATGTGCACACTATATAGATTCTGAGGTGAGTTTTGGGAAATAGGGCGATCAATGTTTCAGACCCCGGTAATATATCAAATAAGACACATTGGGTCCCCAAGATGACGGTGTATTGATCCACAGTGGTTGGAGAGGAGAGCGAAACATTCTTTATAAGGGCGTGGAAACTTCTCACAAGTAGACACGTTTTGAAACTGTGAGGTTGACGGTGATACGTAACAGACCAAAGCGAACAATATCTTCTATCAGTAGACTTGGGCTGTTACAAATGGTATCAGAGTCAGCCACCGGGTGGTGTGCCAGCAAGGACGCTGGCCCCCAAGAGGGGTAGATTGTGAGATCCCATATCGGCTGGGAGGAGAATGAAGCATTCCTTATAAGGGTGTGGAAACCTCTTCCTATCAAACGTGTTTTAAAACCATGAGGCTGACAGCTGTAACGAGTCAAAGCAGACAATATCGGCTAGCGATAGGCTTGGGCTTGGGCTTGGGCTTGGGCTTGGGCTGTTACACTTTGTAGTCTAACCCATCAAATTTGCTGAAGGTTATCGTCTCTACTTGAGAAGTCATAGCATCCATAGTGATTTCTTCAAAGTTTTTATTTAGGGATGCTGATGATTTGATTGCTTATGCCCTATTTGTTAACCGTGTGGTTTTTGAAATTAAACTTATAAATACTACTTCTACGTTAAGTTTGGAAGTTGGGAGGAAACAAGCATAAATTTCTAAAACATAGAACTAAAATCAAAATCGATATCAAACGGGCCATCTGTTTCGGATTTGTTATTGCTTGTCACTGAAAATGTGTAAATTATGACGACCTTAATTCACAGGCTTCAGGTGGCATTGCTTCTTAGTGTCTTCATTGCTTCTTAATTACAAATTATGGACTATTGATACTGGTGATGCTCTATCGAAATCTAAACCTACCTTTATTTTTCTGGACTATTTTCTGTCTTCTGATTTTCCCTCTTAGGCACGTTTTCAAATATTGCGAGGACAGATATTGGAGACAACTTTGACTGTGAGGTTCTTCATATTTCAATATGGAAGTGTGTACAAACTCCATCTCACAGGAAAGAACACATAACTTGCGGTAACCTCTTTTTCATGGCTGGCCTTTTCTTTTTATTGATAAGAAAATGAAAAGGTTGAATATATGGCAATGCTATGTTTAGTCAAAACTTGAAATATGATATGTTTAATGAACACGGTTGATGTAATAGTATTCTCTGTTGGTTGTGGCTGCTAGAAATGAGCGTGGTAAAAGCTCAAGTCTACCGTTATAATATATTGTCTTCTTTGAGCTTTCTCTTTCGAGCTTCCCTTTAAGGTTTTTAAAACACGTCTTGTTAGGGAGAGTGTGGAAACTCAAACTAAAGAATGTTTTGTTCCCCTCTCTAATCGATGTGGGATCTCACAATTCACCCCCTTTGGGGTCCAACTTCTTCTTTGAGGTAACATTGGAGAGAGGAACGAGTGCCAGCGAGGACGTCGGACTCCGAAAGGGGGTGGATTGTGAGATTCCACATCGGTTGGAGAGGAGAACTAAACATTCTTTATAAGGGTGTGGAAACCTCTCTCTAGCAGACACGTTTTAAAAACCTTGAAATCCAAAAAGAAAAGCCTAAAGAGAACAATATTTGCTAGCGGTAGATTTGGACCGTTACAAGCATGATCCAACTTCATTTAGATTTCATTTGAAATGATGGTGTTCTAATTGTCAAGAAATACCAGAAGTACTTGGTTTGA

mRNA sequence

ATGCAGGGCAGGGCCATGGGAGGACTCCCTGTGGGATTGTTGGAGCTGTACGATCCTGACTCTATATTGCTGTCTGCCGATGAAATCCAAGCGGAGGACTCCAATGTTGCTAGGATTTATCCACAATGTTCATGTAAACTTTTCAGAGTCCGAATGCATTATGGGCATCCTGATGTGTTTGACCGTATACTCGAGGTGGCCTTCGCCGGAGATGACGAAGCAATCTCAAGAAGAGCAAGGATGTCGGGAAGCACAGCATTGGATACGGCACTGAATGCTCGGTTTTTGTTCCAGATTCGAGTTTTTACAGCAATCCCTTTGATAATCGGTTTTTGTACTTCAACTTGGACTGCTCAAGGCACGTTTTCAAATATTGCGAGGACAGATATTGGAGACAACTTTGACTGTGAGAAATACCAGAAGTACTTGGTTTGA

Coding sequence (CDS)

ATGCAGGGCAGGGCCATGGGAGGACTCCCTGTGGGATTGTTGGAGCTGTACGATCCTGACTCTATATTGCTGTCTGCCGATGAAATCCAAGCGGAGGACTCCAATGTTGCTAGGATTTATCCACAATGTTCATGTAAACTTTTCAGAGTCCGAATGCATTATGGGCATCCTGATGTGTTTGACCGTATACTCGAGGTGGCCTTCGCCGGAGATGACGAAGCAATCTCAAGAAGAGCAAGGATGTCGGGAAGCACAGCATTGGATACGGCACTGAATGCTCGGTTTTTGTTCCAGATTCGAGTTTTTACAGCAATCCCTTTGATAATCGGTTTTTGTACTTCAACTTGGACTGCTCAAGGCACGTTTTCAAATATTGCGAGGACAGATATTGGAGACAACTTTGACTGTGAGAAATACCAGAAGTACTTGGTTTGA
Homology
[Close]
BLAST of CmoCh10G000740 vs. Swiss-Prot
Match: CALSA_ARATH (Callose synthase 10 OS=Arabidopsis thaliana GN=CALS10 PE=2 SV=5)

HSP 1 Score: 64.7 bits (156), Expect = 9.5e-10
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 1 

Query: 66   VAFAGDDEAISRRARMSGSTALDTALNARFLFQIRVFTAIPLIIGFCTSTWTAQGTFSNI 125
            +AF+G D AISR A++SG+TALD ALNA+FL QI +FTA+P+++GF       +  FS I
Sbjct: 1500 LAFSGADRAISRVAKLSGNTALDAALNAQFLVQIGIFTAVPMVMGFILELGLLKAIFSFI 1559

[Close]
BLAST of CmoCh10G000740 vs. TrEMBL
Match: A0A0A0LRX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002710 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-10
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 1 

Query: 66   VAFAGDDEAISRRARMSGSTALDTALNARFLFQIRVFTAIPLIIGFCTSTWTAQGTFSNI 125
            +AFAG DEAISRRA+M G+TALDTALNA+FLFQI VFTA+P+I+GF       +  FS I
Sbjct: 1501 LAFAGLDEAISRRAKMLGNTALDTALNAQFLFQIGVFTAVPMIMGFILELGLLKAVFSFI 1560

[Close]
BLAST of CmoCh10G000740 vs. TrEMBL
Match: A0A078H8M2_BRANA (BnaC04g08410D protein OS=Brassica napus GN=BnaC04g08410D PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.7e-08
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 1 

Query: 66   VAFAGDDEAISRRARMSGSTALDTALNARFLFQIRVFTAIPLIIGFCTSTWTAQGTFSNI 125
            +AF+G D AISR A++SG+TALD ALNA+FL QI VFTA+P+++GF       +  FS I
Sbjct: 1488 LAFSGSDRAISRVAKLSGNTALDAALNAQFLVQIGVFTAVPMVMGFILELGLLKAIFSFI 1547

[Close]
BLAST of CmoCh10G000740 vs. TrEMBL
Match: M4CM02_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.7e-08
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 1 

Query: 66   VAFAGDDEAISRRARMSGSTALDTALNARFLFQIRVFTAIPLIIGFCTSTWTAQGTFSNI 125
            +AF+G D AISR A++SG+TALD ALNA+FL QI VFTA+P+++GF       +  FS I
Sbjct: 1505 LAFSGSDRAISRVAKLSGNTALDAALNAQFLVQIGVFTAVPMVMGFILELGLLKAIFSFI 1564

[Close]
BLAST of CmoCh10G000740 vs. TrEMBL
Match: A0A078CDR1_BRANA (BnaA05g07560D protein OS=Brassica napus GN=BnaA05g07560D PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.7e-08
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 1 

Query: 66   VAFAGDDEAISRRARMSGSTALDTALNARFLFQIRVFTAIPLIIGFCTSTWTAQGTFSNI 125
            +AF+G D AISR A++SG+TALD ALNA+FL QI VFTA+P+++GF       +  FS I
Sbjct: 1505 LAFSGSDRAISRVAKLSGNTALDAALNAQFLVQIGVFTAVPMVMGFILELGLLKAIFSFI 1564

[Close]
BLAST of CmoCh10G000740 vs. TrEMBL
Match: S8E513_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_03926 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.7e-08
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 1 

Query: 66  VAFAGDDEAISRRARMSGSTALDTALNARFLFQIRVFTAIPLIIGFCTSTWTAQGTFSNI 125
           +AF+G D AISR AR+ G+TALD  LNA+FL QI VFTAIP+I+GF       Q  FS I
Sbjct: 403 LAFSGVDRAISREARLLGNTALDAVLNAQFLVQIGVFTAIPMIMGFILEMGLLQAVFSFI 462

[Close]
BLAST of CmoCh10G000740 vs. TAIR10
Match: AT2G36850.1 (AT2G36850.1 glucan synthase-like 8)

HSP 1 Score: 64.7 bits (156), Expect = 5.3e-11
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 1 

Query: 66   VAFAGDDEAISRRARMSGSTALDTALNARFLFQIRVFTAIPLIIGFCTSTWTAQGTFSNI 125
            +AF+G D AISR A++SG+TALD ALNA+FL QI +FTA+P+++GF       +  FS I
Sbjct: 1500 LAFSGADRAISRVAKLSGNTALDAALNAQFLVQIGIFTAVPMVMGFILELGLLKAIFSFI 1559

[Close]
BLAST of CmoCh10G000740 vs. TAIR10
Match: AT3G07160.1 (AT3G07160.1 glucan synthase-like 10)

HSP 1 Score: 48.9 bits (115), Expect = 3.0e-06
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1 

Query: 66   VAFAGDDEAISRRARMSGSTALDTALNARFLFQIRVFTAIPLIIGF 112
            +A +G    I  RA +   TAL  ALNA+FLFQI VFTA+P+++GF
Sbjct: 1486 LALSGVGATIRERAILLDDTALSAALNAQFLFQIGVFTAVPMVLGF 1531

[Close]
BLAST of CmoCh10G000740 vs. NCBI nr
Match: gi|659128952|ref|XP_008464454.1| (PREDICTED: callose synthase 10 [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 1 

Query: 66   VAFAGDDEAISRRARMSGSTALDTALNARFLFQIRVFTAIPLIIGFCTSTWTAQGTFSNI 125
            +AFAG DEAISRRA+M G+TALDTALNA+FLFQI VFTA+P+I+GF       +  FS I
Sbjct: 1501 LAFAGLDEAISRRAKMLGNTALDTALNAQFLFQIGVFTAVPMIMGFILELGLLKAVFSFI 1560

[Close]
BLAST of CmoCh10G000740 vs. NCBI nr
Match: gi|778655398|ref|XP_011652792.1| (PREDICTED: callose synthase 10 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 1 

Query: 66   VAFAGDDEAISRRARMSGSTALDTALNARFLFQIRVFTAIPLIIGFCTSTWTAQGTFSNI 125
            +AFAG DEAISRRA+M G+TALDTALNA+FLFQI VFTA+P+I+GF       +  FS I
Sbjct: 1501 LAFAGLDEAISRRAKMLGNTALDTALNAQFLFQIGVFTAVPMIMGFILELGLLKAVFSFI 1560

[Close]
BLAST of CmoCh10G000740 vs. NCBI nr
Match: gi|922474229|ref|XP_013635984.1| (PREDICTED: callose synthase 10 [Brassica oleracea var. oleracea])

HSP 1 Score: 65.9 bits (159), Expect = 6.8e-08
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 1 

Query: 66   VAFAGDDEAISRRARMSGSTALDTALNARFLFQIRVFTAIPLIIGFCTSTWTAQGTFSNI 125
            +AF+G D AISR A++SG+TALD ALNA+FL QI VFTA+P+++GF       +  FS I
Sbjct: 1493 LAFSGSDRAISRVAKLSGNTALDAALNAQFLVQIGVFTAVPMVMGFILELGLLKAIFSFI 1552

[Close]
BLAST of CmoCh10G000740 vs. NCBI nr
Match: gi|674958766|emb|CDX75010.1| (BnaA05g07560D [Brassica napus])

HSP 1 Score: 65.9 bits (159), Expect = 6.8e-08
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 1 

Query: 66   VAFAGDDEAISRRARMSGSTALDTALNARFLFQIRVFTAIPLIIGFCTSTWTAQGTFSNI 125
            +AF+G D AISR A++SG+TALD ALNA+FL QI VFTA+P+++GF       +  FS I
Sbjct: 1505 LAFSGSDRAISRVAKLSGNTALDAALNAQFLVQIGVFTAVPMVMGFILELGLLKAIFSFI 1564

[Close]
BLAST of CmoCh10G000740 vs. NCBI nr
Match: gi|923623958|ref|XP_013748404.1| (PREDICTED: LOW QUALITY PROTEIN: callose synthase 10-like [Brassica napus])

HSP 1 Score: 65.9 bits (159), Expect = 6.8e-08
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 1 

Query: 66   VAFAGDDEAISRRARMSGSTALDTALNARFLFQIRVFTAIPLIIGFCTSTWTAQGTFSNI 125
            +AF+G D AISR A++SG+TALD ALNA+FL QI VFTA+P+++GF       +  FS I
Sbjct: 1493 LAFSGSDRAISRVAKLSGNTALDAALNAQFLVQIGVFTAVPMVMGFILELGLLKAIFSFI 1552

The following BLAST results are available for this feature:
BLAST of CmoCh10G000740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CALSA_ARATH9.5e-1053.33Callose synthase 10 OS=Arabidopsis thaliana GN=CALS10 PE=2 SV=5[more]
BLAST of CmoCh10G000740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRX4_CUCSA1.0e-1065.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002710 PE=4 SV=1[more]
A0A078H8M2_BRANA4.7e-0855.00BnaC04g08410D protein OS=Brassica napus GN=BnaC04g08410D PE=4 SV=1[more]
M4CM02_BRARP4.7e-0855.00Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
A0A078CDR1_BRANA4.7e-0855.00BnaA05g07560D protein OS=Brassica napus GN=BnaA05g07560D PE=4 SV=1[more]
S8E513_9LAMI4.7e-0858.33Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_03926 PE=4 SV=1[more]
BLAST of CmoCh10G000740 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G36850.15.3e-1153.33 glucan synthase-like 8[more]
AT3G07160.13.0e-0652.17 glucan synthase-like 10[more]
BLAST of CmoCh10G000740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659128952|ref|XP_008464454.1|1.5e-1065.00PREDICTED: callose synthase 10 [Cucumis melo][more]
gi|778655398|ref|XP_011652792.1|1.5e-1065.00PREDICTED: callose synthase 10 [Cucumis sativus][more]
gi|922474229|ref|XP_013635984.1|6.8e-0855.00PREDICTED: callose synthase 10 [Brassica oleracea var. oleracea][more]
gi|674958766|emb|CDX75010.1|6.8e-0855.00BnaA05g07560D [Brassica napus][more]
gi|923623958|ref|XP_013748404.1|6.8e-0855.00PREDICTED: LOW QUALITY PROTEIN: callose synthase 10-like [Brassica napus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006075 (1->3)-beta-D-glucan biosynthetic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0000148 1,3-beta-D-glucan synthase complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003843 1,3-beta-D-glucan synthase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G000740.1CmoCh10G000740.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12741LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1coord: 67..111
score: 6.2
NoneNo IPR availablePANTHERPTHR12741:SF5CALLOSE SYNTHASE 10coord: 67..111
score: 6.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh10G000740Lsi06G016200Bottle gourd (USVL1VR-Ls)cmolsiB058
CmoCh10G000740Cp4.1LG04g16090Cucurbita pepo (Zucchini)cmocpeB070
CmoCh10G000740Cp4.1LG18g08870Cucurbita pepo (Zucchini)cmocpeB055
CmoCh10G000740MELO3C026219.2Melon (DHL92) v3.6.1cmomedB056
CmoCh10G000740CsaV3_1G000760Cucumber (Chinese Long) v3cmocucB0044
CmoCh10G000740Cla97C06G127400Watermelon (97103) v2cmowmbB071
CmoCh10G000740Bhi02G000413Wax gourdcmowgoB0074
CmoCh10G000740Carg20182Silver-seed gourdcarcmoB1402
CmoCh10G000740Carg10297Silver-seed gourdcarcmoB0493
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh10G000740CmoCh11G000520Cucurbita moschata (Rifu)cmocmoB039
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh10G000740Cucumber (Gy14) v1cgycmoB0432
CmoCh10G000740Cucumber (Gy14) v1cgycmoB1080
CmoCh10G000740Cucurbita maxima (Rimu)cmacmoB067
CmoCh10G000740Cucurbita maxima (Rimu)cmacmoB100
CmoCh10G000740Cucurbita maxima (Rimu)cmacmoB111
CmoCh10G000740Cucurbita maxima (Rimu)cmacmoB241
CmoCh10G000740Wild cucumber (PI 183967)cmocpiB040
CmoCh10G000740Wild cucumber (PI 183967)cmocpiB056
CmoCh10G000740Cucumber (Chinese Long) v2cmocuB061
CmoCh10G000740Cucumber (Chinese Long) v2cmocuB037
CmoCh10G000740Melon (DHL92) v3.5.1cmomeB041
CmoCh10G000740Melon (DHL92) v3.5.1cmomeB053
CmoCh10G000740Melon (DHL92) v3.5.1cmomeB057
CmoCh10G000740Watermelon (Charleston Gray)cmowcgB065
CmoCh10G000740Watermelon (Charleston Gray)cmowcgB053
CmoCh10G000740Watermelon (97103) v1cmowmB045
CmoCh10G000740Watermelon (97103) v1cmowmB064
CmoCh10G000740Bottle gourd (USVL1VR-Ls)cmolsiB044
CmoCh10G000740Cucumber (Gy14) v2cgybcmoB005
CmoCh10G000740Cucumber (Gy14) v2cgybcmoB026
CmoCh10G000740Cucumber (Gy14) v2cgybcmoB262
CmoCh10G000740Melon (DHL92) v3.6.1cmomedB045
CmoCh10G000740Melon (DHL92) v3.6.1cmomedB060
CmoCh10G000740Silver-seed gourdcarcmoB0588
CmoCh10G000740Silver-seed gourdcarcmoB0668
CmoCh10G000740Silver-seed gourdcarcmoB1346
CmoCh10G000740Cucumber (Chinese Long) v3cmocucB0066
CmoCh10G000740Cucumber (Chinese Long) v3cmocucB0074
CmoCh10G000740Watermelon (97103) v2cmowmbB055
CmoCh10G000740Watermelon (97103) v2cmowmbB066
CmoCh10G000740Wax gourdcmowgoB0060
CmoCh10G000740Cucurbita moschata (Rifu)cmocmoB042
CmoCh10G000740Cucurbita moschata (Rifu)cmocmoB054
CmoCh10G000740Cucurbita moschata (Rifu)cmocmoB056
CmoCh10G000740Cucurbita moschata (Rifu)cmocmoB065