CmoCh10G000480 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh10G000480
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTransmembrane protein, putative
LocationCmo_Chr10 : 228881 .. 229373 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTGTGCTGGAAAGTTGAATGTAACTGTAAGCCGCGTTAGTTCAATAAAGTTTTCATCTCACGATGCCTGAAAAATTAAATTAAGGAAAACCCAAAAATGGCACCGCCTCATCCGTCCACGTGAAGCATCAAGATCGATGCAGTTGTCGAATCACTGTCCCGCTTCCAAGTTATTGCCTCGCCTTCTCATATCTTCCATCCTCCCAGCCCCATCCCCATCGCCGAAACTCACAACTTTTTCTGTGGTTCTGCAGGCGTAAACTTGAACACACATCCCATCCAATGGCAGATTGGGGGCCGGTGATTATAGCGGTGGTGCTGTTCGTGCTCCTCAGTCCGGGGCTGCTGTTTCAGATCCCAGCCAGAGGAAGGGTGGTTGAGTTTGGGAACATGCAGACAAGCGGGGCTTCCATTTTAGTCCACGCCATCATCTACTTCGGCCTCATCACCATCTTCCTCGTCGCCATCGGCGTCCACATCTACACTGGCTAA

mRNA sequence

GTCTGTGCTGGAAAGTTGAATGTAACTGTAAGCCGCGTTAGTTCAATAAAGTTTTCATCTCACGATGCCTGAAAAATTAAATTAAGGAAAACCCAAAAATGGCACCGCCTCATCCGTCCACGTGAAGCATCAAGATCGATGCAGTTGTCGAATCACTGTCCCGCTTCCAAGCGTAAACTTGAACACACATCCCATCCAATGGCAGATTGGGGGCCGGTGATTATAGCGGTGGTGCTGTTCGTGCTCCTCAGTCCGGGGCTGCTGTTTCAGATCCCAGCCAGAGGAAGGGTGGTTGAGTTTGGGAACATGCAGACAAGCGGGGCTTCCATTTTAGTCCACGCCATCATCTACTTCGGCCTCATCACCATCTTCCTCGTCGCCATCGGCGTCCACATCTACACTGGCTAA

Coding sequence (CDS)

ATGCAGTTGTCGAATCACTGTCCCGCTTCCAAGCGTAAACTTGAACACACATCCCATCCAATGGCAGATTGGGGGCCGGTGATTATAGCGGTGGTGCTGTTCGTGCTCCTCAGTCCGGGGCTGCTGTTTCAGATCCCAGCCAGAGGAAGGGTGGTTGAGTTTGGGAACATGCAGACAAGCGGGGCTTCCATTTTAGTCCACGCCATCATCTACTTCGGCCTCATCACCATCTTCCTCGTCGCCATCGGCGTCCACATCTACACTGGCTAA
Homology
[Close]
BLAST of CmoCh10G000480 vs. TrEMBL
Match: A0A0B2QV82_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_039124 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.9e-28
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 1 

Query: 7   CPASKRKLEHTSHPMADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILV 66
           CP    KL  ++  MADWGPV+IAVVLFVLLSPGLLFQ+PARGRV EFGNMQTSGASILV
Sbjct: 22  CPPEALKL-FSALKMADWGPVVIAVVLFVLLSPGLLFQMPARGRVAEFGNMQTSGASILV 81

Query: 67  HAIIYFGLITIFLVAIGVHIYTG 90
           HAIIYFGLITIFL+AIGVHIYTG
Sbjct: 82  HAIIYFGLITIFLIAIGVHIYTG 103

[Close]
BLAST of CmoCh10G000480 vs. TrEMBL
Match: I1K6N1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G204400 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.9e-28
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 1 

Query: 7   CPASKRKLEHTSHPMADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILV 66
           CP    KL  ++  MADWGPV+IAVVLFVLLSPGLLFQ+PARGRV EFGNMQTSGASILV
Sbjct: 22  CPPEALKL-FSALKMADWGPVVIAVVLFVLLSPGLLFQMPARGRVAEFGNMQTSGASILV 81

Query: 67  HAIIYFGLITIFLVAIGVHIYTG 90
           HAIIYFGLITIFL+AIGVHIYTG
Sbjct: 82  HAIIYFGLITIFLIAIGVHIYTG 103

[Close]
BLAST of CmoCh10G000480 vs. TrEMBL
Match: A0A0A0LNK0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001470 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.3e-28
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 21 MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 80
          MADWGPVIIAVVLFVLLSPGLLFQIPA+GRVVEFGNMQTSGASILVHAIIYFGLITIFL+
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 81 AIGVHIYTG 90
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]
BLAST of CmoCh10G000480 vs. TrEMBL
Match: Q7X9E3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G286200g PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.2e-27
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 1 

Query: 21 MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 80
          MADWGPVIIAVVLFVLLSPGLLFQIP+RGR+ EFGNMQTSGASILVHA+IYFGLITIFL+
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPSRGRIAEFGNMQTSGASILVHAVIYFGLITIFLI 60

Query: 81 AIGVHIYTG 90
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]
BLAST of CmoCh10G000480 vs. TrEMBL
Match: A0A151RRH0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_033353 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.2e-27
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 1 

Query: 21 MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 80
          MADWGPV+IAVVLFVLLSPGLLFQIPARGRV EFGNMQTSGA+ILVHA+IYFGLITIFL+
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVAEFGNMQTSGAAILVHAVIYFGLITIFLI 60

Query: 81 AIGVHIYTG 90
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]
BLAST of CmoCh10G000480 vs. TAIR10
Match: AT3G48660.1 (AT3G48660.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 121.3 bits (303), Expect = 3.0e-28
Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 21 MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 80
          MADWGPV++AV+LFVLL+PGLLFQIPARGRVVEFGNMQTSGASILVH II+FGLITIF +
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 81 AIGVHIYTG 90
          AI +HIYTG
Sbjct: 61 AIRLHIYTG 69

[Close]
BLAST of CmoCh10G000480 vs. TAIR10
Match: AT5G63500.1 (AT5G63500.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 120.6 bits (301), Expect = 5.1e-28
Identity = 60/69 (86.96%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 21 MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 80
          MADWGPV+IAV+LFV+LSPGLLFQIPA GRVVEFGNMQTSGASILVHAII+FGLITIF +
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 81 AIGVHIYTG 90
          AI VHIY+G
Sbjct: 61 AINVHIYSG 69

[Close]
BLAST of CmoCh10G000480 vs. TAIR10
Match: AT5G40980.1 (AT5G40980.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 101.7 bits (252), Expect = 2.4e-22
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 1 

Query: 22 ADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVA 81
          ADWGPVI+AV LF+LLSPGLLFQ+PAR RV+EFGNM TSG SILVHAIIYF ++TI ++A
Sbjct: 3  ADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIA 62

Query: 82 IGVHIY 88
          I +HI+
Sbjct: 63 IQIHIH 68

[Close]
BLAST of CmoCh10G000480 vs. TAIR10
Match: AT3G27027.1 (AT3G27027.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 97.1 bits (240), Expect = 6.0e-21
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 1 

Query: 23 DWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAI 82
          DWGPVI+AV LF+LLSPGLLFQ+PAR RVVEFGNM TSG +ILVHA IYF ++TI ++AI
Sbjct: 4  DWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAFIYFCILTILVIAI 63

Query: 83 GVHIY 88
           +HI+
Sbjct: 64 QIHIH 68

[Close]
BLAST of CmoCh10G000480 vs. TAIR10
Match: AT3G01940.1 (AT3G01940.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 96.3 bits (238), Expect = 1.0e-20
Identity = 47/66 (71.21%), Postives = 58/66 (87.88%), Query Frame = 1 

Query: 22 ADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVA 81
          ADWGPV +AVVLFV+LSPGLLFQ+PAR RV+E GNM TSG SILVHAI++F +ITI ++A
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIA 63

Query: 82 IGVHIY 88
          I +HI+
Sbjct: 64 IQIHIH 69

[Close]
BLAST of CmoCh10G000480 vs. NCBI nr
Match: gi|356513423|ref|XP_003525413.1| (PREDICTED: uncharacterized protein LOC100805083 [Glycine max])

HSP 1 Score: 132.9 bits (333), Expect = 2.8e-28
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 1 

Query: 7   CPASKRKLEHTSHPMADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILV 66
           CP    KL  ++  MADWGPV+IAVVLFVLLSPGLLFQ+PARGRV EFGNMQTSGASILV
Sbjct: 22  CPPEALKL-FSALKMADWGPVVIAVVLFVLLSPGLLFQMPARGRVAEFGNMQTSGASILV 81

Query: 67  HAIIYFGLITIFLVAIGVHIYTG 90
           HAIIYFGLITIFL+AIGVHIYTG
Sbjct: 82  HAIIYFGLITIFLIAIGVHIYTG 103

[Close]
BLAST of CmoCh10G000480 vs. NCBI nr
Match: gi|449440538|ref|XP_004138041.1| (PREDICTED: uncharacterized protein LOC101212373 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 6.2e-28
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 21 MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 80
          MADWGPVIIAVVLFVLLSPGLLFQIPA+GRVVEFGNMQTSGASILVHAIIYFGLITIFL+
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 81 AIGVHIYTG 90
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]
BLAST of CmoCh10G000480 vs. NCBI nr
Match: gi|1012094223|ref|XP_015955605.1| (PREDICTED: uncharacterized protein LOC107479995 [Arachis duranensis])

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-27
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 1 

Query: 21 MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 80
          MADWGPV+IAVVLFVLLSPGLLFQIP RGRVVEFGNMQTSGASI+VHAIIYFGLITIFL+
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQIPGRGRVVEFGNMQTSGASIMVHAIIYFGLITIFLI 60

Query: 81 AIGVHIYTG 90
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]
BLAST of CmoCh10G000480 vs. NCBI nr
Match: gi|593793969|ref|XP_007160023.1| (hypothetical protein PHAVU_002G286200g [Phaseolus vulgaris])

HSP 1 Score: 129.4 bits (324), Expect = 3.1e-27
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 1 

Query: 21 MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 80
          MADWGPVIIAVVLFVLLSPGLLFQIP+RGR+ EFGNMQTSGASILVHA+IYFGLITIFL+
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPSRGRIAEFGNMQTSGASILVHAVIYFGLITIFLI 60

Query: 81 AIGVHIYTG 90
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]
BLAST of CmoCh10G000480 vs. NCBI nr
Match: gi|1012333764|gb|KYP45147.1| (hypothetical protein KK1_033353 [Cajanus cajan])

HSP 1 Score: 129.4 bits (324), Expect = 3.1e-27
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 1 

Query: 21 MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 80
          MADWGPV+IAVVLFVLLSPGLLFQIPARGRV EFGNMQTSGA+ILVHA+IYFGLITIFL+
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVAEFGNMQTSGAAILVHAVIYFGLITIFLI 60

Query: 81 AIGVHIYTG 90
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

The following BLAST results are available for this feature:
BLAST of CmoCh10G000480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh10G000480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0B2QV82_GLYSO1.9e-2883.13Uncharacterized protein OS=Glycine soja GN=glysoja_039124 PE=4 SV=1[more]
I1K6N1_SOYBN1.9e-2883.13Uncharacterized protein OS=Glycine max GN=GLYMA_05G204400 PE=4 SV=1[more]
A0A0A0LNK0_CUCSA4.3e-2897.10Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001470 PE=4 SV=1[more]
Q7X9E3_PHAVU2.2e-2792.75Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G286200g PE=2 SV=1[more]
A0A151RRH0_CAJCA2.2e-2792.75Uncharacterized protein OS=Cajanus cajan GN=KK1_033353 PE=4 SV=1[more]
BLAST of CmoCh10G000480 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G48660.13.0e-2885.51 Protein of unknown function (DUF 3339)[more]
AT5G63500.15.1e-2886.96 Protein of unknown function (DUF 3339)[more]
AT5G40980.12.4e-2274.24 Protein of unknown function (DUF 3339)[more]
AT3G27027.16.0e-2172.31 Protein of unknown function (DUF 3339)[more]
AT3G01940.11.0e-2071.21 Protein of unknown function (DUF 3339)[more]
BLAST of CmoCh10G000480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|356513423|ref|XP_003525413.1|2.8e-2883.13PREDICTED: uncharacterized protein LOC100805083 [Glycine max][more]
gi|449440538|ref|XP_004138041.1|6.2e-2897.10PREDICTED: uncharacterized protein LOC101212373 [Cucumis sativus][more]
gi|1012094223|ref|XP_015955605.1|1.8e-2794.20PREDICTED: uncharacterized protein LOC107479995 [Arachis duranensis][more]
gi|593793969|ref|XP_007160023.1|3.1e-2792.75hypothetical protein PHAVU_002G286200g [Phaseolus vulgaris][more]
gi|1012333764|gb|KYP45147.1|3.1e-2792.75hypothetical protein KK1_033353 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021775DUF3339
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G000480.1CmoCh10G000480.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021775Protein of unknown function DUF3339PFAMPF11820DUF3339coord: 21..87
score: 1.3
NoneNo IPR availablePANTHERPTHR33128FAMILY NOT NAMEDcoord: 1..89
score: 6.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh10G000480Cucurbita pepo (Zucchini)cmocpeB045
CmoCh10G000480Cucurbita pepo (Zucchini)cmocpeB055
CmoCh10G000480Cucurbita pepo (Zucchini)cmocpeB057
CmoCh10G000480Cucurbita pepo (Zucchini)cmocpeB070
CmoCh10G000480Bottle gourd (USVL1VR-Ls)cmolsiB044
CmoCh10G000480Bottle gourd (USVL1VR-Ls)cmolsiB058
CmoCh10G000480Cucumber (Gy14) v2cgybcmoB005
CmoCh10G000480Cucumber (Gy14) v2cgybcmoB026
CmoCh10G000480Cucumber (Gy14) v2cgybcmoB262
CmoCh10G000480Melon (DHL92) v3.6.1cmomedB045
CmoCh10G000480Melon (DHL92) v3.6.1cmomedB060
CmoCh10G000480Silver-seed gourdcarcmoB0493
CmoCh10G000480Silver-seed gourdcarcmoB0588
CmoCh10G000480Silver-seed gourdcarcmoB0668
CmoCh10G000480Silver-seed gourdcarcmoB0829
CmoCh10G000480Silver-seed gourdcarcmoB1346
CmoCh10G000480Cucumber (Chinese Long) v3cmocucB0044
CmoCh10G000480Cucumber (Chinese Long) v3cmocucB0066
CmoCh10G000480Cucumber (Chinese Long) v3cmocucB0074
CmoCh10G000480Watermelon (97103) v2cmowmbB071
CmoCh10G000480Watermelon (97103) v2cmowmbB055
CmoCh10G000480Watermelon (97103) v2cmowmbB066
CmoCh10G000480Wax gourdcmowgoB0060
CmoCh10G000480Wax gourdcmowgoB0075
CmoCh10G000480Cucurbita moschata (Rifu)cmocmoB039
CmoCh10G000480Cucurbita moschata (Rifu)cmocmoB042
CmoCh10G000480Cucurbita moschata (Rifu)cmocmoB054
CmoCh10G000480Cucurbita moschata (Rifu)cmocmoB056
CmoCh10G000480Cucurbita moschata (Rifu)cmocmoB065
CmoCh10G000480Cucumber (Gy14) v1cgycmoB0432
CmoCh10G000480Cucumber (Gy14) v1cgycmoB1080
CmoCh10G000480Cucurbita maxima (Rimu)cmacmoB067
CmoCh10G000480Cucurbita maxima (Rimu)cmacmoB100
CmoCh10G000480Cucurbita maxima (Rimu)cmacmoB111
CmoCh10G000480Cucurbita maxima (Rimu)cmacmoB212
CmoCh10G000480Cucurbita maxima (Rimu)cmacmoB241
CmoCh10G000480Cucurbita maxima (Rimu)cmacmoB387
CmoCh10G000480Wild cucumber (PI 183967)cmocpiB040
CmoCh10G000480Wild cucumber (PI 183967)cmocpiB056
CmoCh10G000480Cucumber (Chinese Long) v2cmocuB061
CmoCh10G000480Cucumber (Chinese Long) v2cmocuB037
CmoCh10G000480Melon (DHL92) v3.5.1cmomeB041
CmoCh10G000480Melon (DHL92) v3.5.1cmomeB057
CmoCh10G000480Watermelon (Charleston Gray)cmowcgB065
CmoCh10G000480Watermelon (Charleston Gray)cmowcgB053
CmoCh10G000480Watermelon (97103) v1cmowmB045
CmoCh10G000480Watermelon (97103) v1cmowmB064