CmoCh09G012880 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGCTGTCACGGCTACATAACAAGGATGCATTGGTCGAGATTATTACCCAAAATCTAAATTCTCATTTGGAAAATCTTCCGGATGATCTTGAAAGGAAAGCCAATGGAGCTTCAATCTATAGAATACCGGACCATATAAAGAAGGTTCATCCAAAGGCATTCAAGCCGAAGCGGGTATCGTTCGGGCCATACCACCATGGGGAACTGCATTTGTCTCCCATGGAAAAGATGAAACATTTGGCACTTCGCTATTTCGAAAGGCGCTGCGGGTTGTGTGTTGAAGACATCGTGAATGAGCTGTGGGACATGTTGGAAGATCTGCAGAGATCATATGATAAACTTGATGATGAATGGTGTTAG ATGGAGCTGTCACGGCTACATAACAAGGATGCATTGGTCGAGATTATTACCCAAAATCTAAATTCTCATTTGGAAAATCTTCCGGATGATCTTGAAAGGAAAGCCAATGGAGCTTCAATCTATAGAATACCGGACCATATAAAGAAGGTTCATCCAAAGGCATTCAAGCCGAAGCGGGTATCGTTCGGGCCATACCACCATGGGGAACTGCATTTGTCTCCCATGGAAAAGATGAAACATTTGGCACTTCGCTATTTCGAAAGGCGCTGCGGGTTGTGTGTTGAAGACATCGTGAATGAGCTGTGGGACATGTTGGAAGATCTGCAGAGATCATATGATAAACTTGATGATGAATGGTGTTAG ATGGAGCTGTCACGGCTACATAACAAGGATGCATTGGTCGAGATTATTACCCAAAATCTAAATTCTCATTTGGAAAATCTTCCGGATGATCTTGAAAGGAAAGCCAATGGAGCTTCAATCTATAGAATACCGGACCATATAAAGAAGGTTCATCCAAAGGCATTCAAGCCGAAGCGGGTATCGTTCGGGCCATACCACCATGGGGAACTGCATTTGTCTCCCATGGAAAAGATGAAACATTTGGCACTTCGCTATTTCGAAAGGCGCTGCGGGTTGTGTGTTGAAGACATCGTGAATGAGCTGTGGGACATGTTGGAAGATCTGCAGAGATCATATGATAAACTTGATGATGAATGGTGTTAG
BLAST of CmoCh09G012880 vs. Swiss-Prot
Match: Y3720_ARATH (UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 1.8e-06 Identity = 26/78 (33.33%), Postives = 48/78 (61.54%), Query Frame = 1
BLAST of CmoCh09G012880 vs. TrEMBL
Match: A0A059AFW4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01706 PE=4 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 2.3e-16 Identity = 43/101 (42.57%), Postives = 66/101 (65.35%), Query Frame = 1
BLAST of CmoCh09G012880 vs. TrEMBL
Match: A0A059ADT7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01686 PE=4 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 3.9e-16 Identity = 44/93 (47.31%), Postives = 60/93 (64.52%), Query Frame = 1
BLAST of CmoCh09G012880 vs. TrEMBL
Match: A0A059A8X2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03612 PE=4 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 8.8e-16 Identity = 49/112 (43.75%), Postives = 68/112 (60.71%), Query Frame = 1
BLAST of CmoCh09G012880 vs. TrEMBL
Match: A0A0A0KAA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091270 PE=4 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 1.1e-15 Identity = 44/82 (53.66%), Postives = 59/82 (71.95%), Query Frame = 1
BLAST of CmoCh09G012880 vs. TrEMBL
Match: A0A059AF22_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01679 PE=4 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 2.6e-15 Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 1
BLAST of CmoCh09G012880 vs. TAIR10
Match: AT3G50160.1 (AT3G50160.1 Plant protein of unknown function (DUF247)) HSP 1 Score: 63.9 bits (154), Expect = 7.6e-11 Identity = 33/105 (31.43%), Postives = 56/105 (53.33%), Query Frame = 1
BLAST of CmoCh09G012880 vs. TAIR10
Match: AT3G47210.1 (AT3G47210.1 Plant protein of unknown function (DUF247)) HSP 1 Score: 58.5 bits (140), Expect = 3.2e-09 Identity = 26/75 (34.67%), Postives = 46/75 (61.33%), Query Frame = 1
BLAST of CmoCh09G012880 vs. TAIR10
Match: AT3G47250.1 (AT3G47250.1 Plant protein of unknown function (DUF247)) HSP 1 Score: 58.5 bits (140), Expect = 3.2e-09 Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 1
BLAST of CmoCh09G012880 vs. TAIR10
Match: AT3G50150.1 (AT3G50150.1 Plant protein of unknown function (DUF247)) HSP 1 Score: 57.0 bits (136), Expect = 9.3e-09 Identity = 25/73 (34.25%), Postives = 45/73 (61.64%), Query Frame = 1
BLAST of CmoCh09G012880 vs. TAIR10
Match: AT3G50170.1 (AT3G50170.1 Plant protein of unknown function (DUF247)) HSP 1 Score: 54.7 bits (130), Expect = 4.6e-08 Identity = 26/74 (35.14%), Postives = 43/74 (58.11%), Query Frame = 1
BLAST of CmoCh09G012880 vs. NCBI nr
Match: gi|702486365|ref|XP_010034510.1| (PREDICTED: UPF0481 protein At3g47200-like [Eucalyptus grandis]) HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16 Identity = 46/100 (46.00%), Postives = 64/100 (64.00%), Query Frame = 1
BLAST of CmoCh09G012880 vs. NCBI nr
Match: gi|629085928|gb|KCW52285.1| (hypothetical protein EUGRSUZ_J01706 [Eucalyptus grandis]) HSP 1 Score: 93.2 bits (230), Expect = 3.3e-16 Identity = 43/101 (42.57%), Postives = 66/101 (65.35%), Query Frame = 1
BLAST of CmoCh09G012880 vs. NCBI nr
Match: gi|629085910|gb|KCW52267.1| (hypothetical protein EUGRSUZ_J01686 [Eucalyptus grandis]) HSP 1 Score: 92.4 bits (228), Expect = 5.6e-16 Identity = 44/93 (47.31%), Postives = 60/93 (64.52%), Query Frame = 1
BLAST of CmoCh09G012880 vs. NCBI nr
Match: gi|702504366|ref|XP_010039300.1| (PREDICTED: UPF0481 protein At3g47200-like [Eucalyptus grandis]) HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15 Identity = 49/112 (43.75%), Postives = 68/112 (60.71%), Query Frame = 1
BLAST of CmoCh09G012880 vs. NCBI nr
Match: gi|449445794|ref|XP_004140657.1| (PREDICTED: UPF0481 protein At3g47200 [Cucumis sativus]) HSP 1 Score: 90.9 bits (224), Expect = 1.6e-15 Identity = 44/82 (53.66%), Postives = 59/82 (71.95%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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