CmoCh09G012880 (gene) Cucurbita moschata (Rifu)

NameCmoCh09G012880
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPlant protein of unknown function (DUF247)
LocationCmo_Chr09 : 11435659 .. 11436021 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCTGTCACGGCTACATAACAAGGATGCATTGGTCGAGATTATTACCCAAAATCTAAATTCTCATTTGGAAAATCTTCCGGATGATCTTGAAAGGAAAGCCAATGGAGCTTCAATCTATAGAATACCGGACCATATAAAGAAGGTTCATCCAAAGGCATTCAAGCCGAAGCGGGTATCGTTCGGGCCATACCACCATGGGGAACTGCATTTGTCTCCCATGGAAAAGATGAAACATTTGGCACTTCGCTATTTCGAAAGGCGCTGCGGGTTGTGTGTTGAAGACATCGTGAATGAGCTGTGGGACATGTTGGAAGATCTGCAGAGATCATATGATAAACTTGATGATGAATGGTGTTAG

mRNA sequence

ATGGAGCTGTCACGGCTACATAACAAGGATGCATTGGTCGAGATTATTACCCAAAATCTAAATTCTCATTTGGAAAATCTTCCGGATGATCTTGAAAGGAAAGCCAATGGAGCTTCAATCTATAGAATACCGGACCATATAAAGAAGGTTCATCCAAAGGCATTCAAGCCGAAGCGGGTATCGTTCGGGCCATACCACCATGGGGAACTGCATTTGTCTCCCATGGAAAAGATGAAACATTTGGCACTTCGCTATTTCGAAAGGCGCTGCGGGTTGTGTGTTGAAGACATCGTGAATGAGCTGTGGGACATGTTGGAAGATCTGCAGAGATCATATGATAAACTTGATGATGAATGGTGTTAG

Coding sequence (CDS)

ATGGAGCTGTCACGGCTACATAACAAGGATGCATTGGTCGAGATTATTACCCAAAATCTAAATTCTCATTTGGAAAATCTTCCGGATGATCTTGAAAGGAAAGCCAATGGAGCTTCAATCTATAGAATACCGGACCATATAAAGAAGGTTCATCCAAAGGCATTCAAGCCGAAGCGGGTATCGTTCGGGCCATACCACCATGGGGAACTGCATTTGTCTCCCATGGAAAAGATGAAACATTTGGCACTTCGCTATTTCGAAAGGCGCTGCGGGTTGTGTGTTGAAGACATCGTGAATGAGCTGTGGGACATGTTGGAAGATCTGCAGAGATCATATGATAAACTTGATGATGAATGGTGTTAG
BLAST of CmoCh09G012880 vs. Swiss-Prot
Match: Y3720_ARATH (UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-06
Identity = 26/78 (33.33%), Postives = 48/78 (61.54%), Query Frame = 1

Query: 40  IYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYF---ERRCGLCVED 99
           I+R+P+    ++PKA+KPK VS GPYH+GE HL  +++ K   L+ F    ++  +    
Sbjct: 48  IFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDVEENV 107

Query: 100 IVNELWDMLEDLQRSYDK 115
           +V  + D+ + +++SY +
Sbjct: 108 LVKAVVDLEDKIRKSYSE 125

BLAST of CmoCh09G012880 vs. TrEMBL
Match: A0A059AFW4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01706 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.3e-16
Identity = 43/101 (42.57%), Postives = 66/101 (65.35%), Query Frame = 1

Query: 19  NLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKM 78
           +LN +L  +P D ++     SIY++P  I   +P+A++PK VSFGPYH+ E+HL PME+ 
Sbjct: 18  HLNENLNCMPRDKQQCWKSPSIYKVPPFITDFNPEAYRPKVVSFGPYHYNEVHLRPMEEH 77

Query: 79  KHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEW 120
           KH AL +F +R G  +E   + L  +  +L+ SY+KLD +W
Sbjct: 78  KHRALLHFLKRSGKSIEPFFDSLRKVARELKDSYNKLDSKW 118

BLAST of CmoCh09G012880 vs. TrEMBL
Match: A0A059ADT7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01686 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.9e-16
Identity = 44/93 (47.31%), Postives = 60/93 (64.52%), Query Frame = 1

Query: 27  LPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYF 86
           +P D +R     SIYR+P  +  ++ KAF+P+ VSFGPYHHGE+HL  ME  KH AL +F
Sbjct: 1   MPPDEQRHWKKRSIYRVPACVTDLNRKAFQPQAVSFGPYHHGEIHLRTMEDHKHRALLHF 60

Query: 87  ERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEW 120
            RR G  ++  +  L ++  DL+ SYD LD EW
Sbjct: 61  LRRSGKPLDPFLESLREVARDLEESYDALDLEW 93

BLAST of CmoCh09G012880 vs. TrEMBL
Match: A0A059A8X2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03612 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.8e-16
Identity = 49/112 (43.75%), Postives = 68/112 (60.71%), Query Frame = 1

Query: 8   NKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHH 67
           NK   +  +T+++     N  D+   K +  SIYR+PD + K++ +A+ P+ VSFGPYHH
Sbjct: 11  NKTNWIVEVTEDVEHMRSNFDDERHWKKH--SIYRVPDCVAKLNREAYWPEAVSFGPYHH 70

Query: 68  GELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEW 120
           GE HL PME  KH AL +F RR G  VE  +  L D+ ++LQ SY  LD  W
Sbjct: 71  GEDHLLPMENHKHRALLHFLRRSGKPVERFLKSLSDVAQELQDSYHLLDPWW 120

BLAST of CmoCh09G012880 vs. TrEMBL
Match: A0A0A0KAA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091270 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-15
Identity = 44/82 (53.66%), Postives = 59/82 (71.95%), Query Frame = 1

Query: 39  SIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIV 98
           SIY+IP  I++V+PKA++PK VS GPYH+G+ HL PME+ KH A  +F+ R  L +E IV
Sbjct: 41  SIYKIPQFIREVNPKAYEPKLVSLGPYHYGKPHLLPMEREKHKAFLHFKARNNLYLESIV 100

Query: 99  NELWDMLEDLQRSY-DKLDDEW 120
           + +  +LEDL  SY D LDD W
Sbjct: 101 DSVCSILEDLLGSYDDNLDDRW 122

BLAST of CmoCh09G012880 vs. TrEMBL
Match: A0A059AF22_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01679 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-15
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 1

Query: 20  LNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMK 79
           +N  L+ +P D ++     SIYR+P  +  ++ KAF+P+ VSFGPYHHG+ HL  ME  K
Sbjct: 15  INESLKCMPTDEQQYWKKRSIYRVPACVTDLNRKAFQPQAVSFGPYHHGKNHLRTMEDHK 74

Query: 80  HLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEW 120
           H AL +F RR G  ++  +  L ++  DL+ SYD LD EW
Sbjct: 75  HRALLHFLRRSGKPLDPFLKSLREVARDLEESYDTLDLEW 114

BLAST of CmoCh09G012880 vs. TAIR10
Match: AT3G50160.1 (AT3G50160.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 63.9 bits (154), Expect = 7.6e-11
Identity = 33/105 (31.43%), Postives = 56/105 (53.33%), Query Frame = 1

Query: 8   NKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHH 67
           N+  L EI   +LN  ++ L D+     +   IYR+P ++++   K++ P+ VS GPYHH
Sbjct: 74  NEQKLREIWVISLNDKMKTLGDNATTSWDNLCIYRVPPYLQENDTKSYMPQIVSIGPYHH 133

Query: 68  GELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSY 113
           G  HL PME+ K  A+     R    +E  ++ + ++ E  +  Y
Sbjct: 134 GHKHLMPMERHKWRAVNMVMARAKHDIEMYIDAMKELEEKARACY 178

BLAST of CmoCh09G012880 vs. TAIR10
Match: AT3G47210.1 (AT3G47210.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 58.5 bits (140), Expect = 3.2e-09
Identity = 26/75 (34.67%), Postives = 46/75 (61.33%), Query Frame = 1

Query: 40  IYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVN 99
           I+R+P    +++P+A+KPK VS GPYHHG  HL  +++ K   L  F R   +  + + N
Sbjct: 95  IFRVPKSFAEMNPEAYKPKVVSIGPYHHGRKHLEMIQQHKLRFLHLFLRTASVDRDVLFN 154

Query: 100 ELWDMLEDLQRSYDK 115
            + D  +++++SY +
Sbjct: 155 AVVDWEDEIRKSYSE 169

BLAST of CmoCh09G012880 vs. TAIR10
Match: AT3G47250.1 (AT3G47250.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 58.5 bits (140), Expect = 3.2e-09
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 1

Query: 5   RLHNKDALVEIITQNLNSHLENLPDDLERKANGAS--IYRIPDHIKKVHPKAFKPKRVSF 64
           R  ++ ++V  I +NL S     P  L   A  AS  I+RIPD + +V+PKA+KPK VS 
Sbjct: 28  RQRSERSVVSHIKRNLQS--SGKPLILLESAGKASCCIFRIPDSLAEVNPKAYKPKVVSI 87

Query: 65  GPYHHGELHLSPMEKMKHLALRYFERR 90
           GPYH+GE HL  +++ K   L  F  R
Sbjct: 88  GPYHYGENHLQMIQQHKFRFLELFVDR 112

BLAST of CmoCh09G012880 vs. TAIR10
Match: AT3G50150.1 (AT3G50150.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 57.0 bits (136), Expect = 9.3e-09
Identity = 25/73 (34.25%), Postives = 45/73 (61.64%), Query Frame = 1

Query: 40  IYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVN 99
           IYR+P ++++   K++ P+ VS GPYHHG++HL PME+ K  A+     R    +E  ++
Sbjct: 92  IYRVPFYLQENDKKSYLPQTVSIGPYHHGKVHLRPMERHKWRAVNMIMARTKHNIEMYID 151

Query: 100 ELWDMLEDLQRSY 113
            + ++ E+ +  Y
Sbjct: 152 AMKELEEEARACY 164

BLAST of CmoCh09G012880 vs. TAIR10
Match: AT3G50170.1 (AT3G50170.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 54.7 bits (130), Expect = 4.6e-08
Identity = 26/74 (35.14%), Postives = 43/74 (58.11%), Query Frame = 1

Query: 40  IYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVN 99
           IYR+P ++++   K++ P+ VS GPYHHG+  L PME+ K  AL    +R    +E   N
Sbjct: 115 IYRVPHYLQENDKKSYFPQTVSLGPYHHGKKRLRPMERHKWRALNKVLKRLKQRIEMYTN 174

Query: 100 ELWDMLEDLQRSYD 114
            + ++ E  +  Y+
Sbjct: 175 AMRELEEKARACYE 188

BLAST of CmoCh09G012880 vs. NCBI nr
Match: gi|702486365|ref|XP_010034510.1| (PREDICTED: UPF0481 protein At3g47200-like [Eucalyptus grandis])

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 46/100 (46.00%), Postives = 64/100 (64.00%), Query Frame = 1

Query: 20  LNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMK 79
           +N  L+ +P D +R     SIYR+P  +  ++ KAF+P+ VSFGPYHHGE+HL  ME  K
Sbjct: 15  VNESLKCMPPDEQRHWKKRSIYRVPACVTDLNRKAFQPQAVSFGPYHHGEIHLRTMEDHK 74

Query: 80  HLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEW 120
           H AL +F RR G  ++  +  L ++  DL+ SYD LD EW
Sbjct: 75  HRALLHFLRRSGKPLDPFLESLREVARDLEESYDALDLEW 114

BLAST of CmoCh09G012880 vs. NCBI nr
Match: gi|629085928|gb|KCW52285.1| (hypothetical protein EUGRSUZ_J01706 [Eucalyptus grandis])

HSP 1 Score: 93.2 bits (230), Expect = 3.3e-16
Identity = 43/101 (42.57%), Postives = 66/101 (65.35%), Query Frame = 1

Query: 19  NLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKM 78
           +LN +L  +P D ++     SIY++P  I   +P+A++PK VSFGPYH+ E+HL PME+ 
Sbjct: 18  HLNENLNCMPRDKQQCWKSPSIYKVPPFITDFNPEAYRPKVVSFGPYHYNEVHLRPMEEH 77

Query: 79  KHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEW 120
           KH AL +F +R G  +E   + L  +  +L+ SY+KLD +W
Sbjct: 78  KHRALLHFLKRSGKSIEPFFDSLRKVARELKDSYNKLDSKW 118

BLAST of CmoCh09G012880 vs. NCBI nr
Match: gi|629085910|gb|KCW52267.1| (hypothetical protein EUGRSUZ_J01686 [Eucalyptus grandis])

HSP 1 Score: 92.4 bits (228), Expect = 5.6e-16
Identity = 44/93 (47.31%), Postives = 60/93 (64.52%), Query Frame = 1

Query: 27  LPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYF 86
           +P D +R     SIYR+P  +  ++ KAF+P+ VSFGPYHHGE+HL  ME  KH AL +F
Sbjct: 1   MPPDEQRHWKKRSIYRVPACVTDLNRKAFQPQAVSFGPYHHGEIHLRTMEDHKHRALLHF 60

Query: 87  ERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEW 120
            RR G  ++  +  L ++  DL+ SYD LD EW
Sbjct: 61  LRRSGKPLDPFLESLREVARDLEESYDALDLEW 93

BLAST of CmoCh09G012880 vs. NCBI nr
Match: gi|702504366|ref|XP_010039300.1| (PREDICTED: UPF0481 protein At3g47200-like [Eucalyptus grandis])

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 49/112 (43.75%), Postives = 68/112 (60.71%), Query Frame = 1

Query: 8   NKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHH 67
           NK   +  +T+++     N  D+   K +  SIYR+PD + K++ +A+ P+ VSFGPYHH
Sbjct: 11  NKTNWIVEVTEDVEHMRSNFDDERHWKKH--SIYRVPDCVAKLNREAYWPEAVSFGPYHH 70

Query: 68  GELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEW 120
           GE HL PME  KH AL +F RR G  VE  +  L D+ ++LQ SY  LD  W
Sbjct: 71  GEDHLLPMENHKHRALLHFLRRSGKPVERFLKSLSDVAQELQDSYHLLDPWW 120

BLAST of CmoCh09G012880 vs. NCBI nr
Match: gi|449445794|ref|XP_004140657.1| (PREDICTED: UPF0481 protein At3g47200 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 1.6e-15
Identity = 44/82 (53.66%), Postives = 59/82 (71.95%), Query Frame = 1

Query: 39  SIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIV 98
           SIY+IP  I++V+PKA++PK VS GPYH+G+ HL PME+ KH A  +F+ R  L +E IV
Sbjct: 41  SIYKIPQFIREVNPKAYEPKLVSLGPYHYGKPHLLPMEREKHKAFLHFKARNNLYLESIV 100

Query: 99  NELWDMLEDLQRSY-DKLDDEW 120
           + +  +LEDL  SY D LDD W
Sbjct: 101 DSVCSILEDLLGSYDDNLDDRW 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Y3720_ARATH1.8e-0633.33UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A059AFW4_EUCGR2.3e-1642.57Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01706 PE=4 SV=1[more]
A0A059ADT7_EUCGR3.9e-1647.31Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01686 PE=4 SV=1[more]
A0A059A8X2_EUCGR8.8e-1643.75Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03612 PE=4 SV=1[more]
A0A0A0KAA3_CUCSA1.1e-1553.66Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091270 PE=4 SV=1[more]
A0A059AF22_EUCGR2.6e-1544.00Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01679 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G50160.17.6e-1131.43 Plant protein of unknown function (DUF247)[more]
AT3G47210.13.2e-0934.67 Plant protein of unknown function (DUF247)[more]
AT3G47250.13.2e-0942.53 Plant protein of unknown function (DUF247)[more]
AT3G50150.19.3e-0934.25 Plant protein of unknown function (DUF247)[more]
AT3G50170.14.6e-0835.14 Plant protein of unknown function (DUF247)[more]
Match NameE-valueIdentityDescription
gi|702486365|ref|XP_010034510.1|1.1e-1646.00PREDICTED: UPF0481 protein At3g47200-like [Eucalyptus grandis][more]
gi|629085928|gb|KCW52285.1|3.3e-1642.57hypothetical protein EUGRSUZ_J01706 [Eucalyptus grandis][more]
gi|629085910|gb|KCW52267.1|5.6e-1647.31hypothetical protein EUGRSUZ_J01686 [Eucalyptus grandis][more]
gi|702504366|ref|XP_010039300.1|1.3e-1543.75PREDICTED: UPF0481 protein At3g47200-like [Eucalyptus grandis][more]
gi|449445794|ref|XP_004140657.1|1.6e-1553.66PREDICTED: UPF0481 protein At3g47200 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004158DUF247_pln
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G012880.1CmoCh09G012880.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004158Protein of unknown function DUF247, plantPFAMPF03140DUF247coord: 40..114
score: 1.2
NoneNo IPR availablePANTHERPTHR31549FAMILY NOT NAMEDcoord: 39..120
score: 9.0
NoneNo IPR availablePANTHERPTHR31549:SF19SUBFAMILY NOT NAMEDcoord: 39..120
score: 9.0

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None