CmoCh09G012510 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh09G012510
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTransposon Ty1-OL Gag-Pol polyprotein
LocationCmo_Chr09 : 10785634 .. 10786476 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGAGAATCAGACGGACAGGAAAATCAAAAAGTTGAGATCAGACAACGGTGGAGAATATACTTATGATCCATTCCTTAAAGTATGTCGAGATGAAGGGATCGTTCGACACTTCGCTGTTCCTAGTAAGCCACAACAAAATGGAGTTGCTGAGAGAATGAACCAGACATTAATAGAGAAGATTCGATGCATTTTGTCTCAAGCAGGATTGAGTAAGGCATTTTGGGCTGAGGCTCTCAGCTATGCAGTTCACCTGGTGAATCGTTTACCTGTTTCTGGAAATGGTGGGAAAACTCCGCTTGAGGTATGGTCGGGTACTTCTGTTAGTGATTATGATCAATTGCATGTGTTTGGGTGTCCTGCTTATTATCATGTGACAGACTCAAAGCTGGATCCTAGAGCAAAAAAAAAAGCCAAATTTATGGGCTTTAGCAAAGGCGTAAAGGGCTATAGGTTATGGTGTCCAGAAACAAGTAAGATCGTTAATAGTCGAGACGTGACATTCGATGAGAAAAGAATGTTGTTGCAGAAAATTGAAAATAATGACGAGGCATTGAAGTAGGTGGAGAAGGTGGTGTTCTCTCCTGATATGGTTGCTCCTACTGGAGAACCTATTGATCAGGTAGATAATAACTCTGATGTCTTAGAACAGGAAGAGCAAAACCTTGATGAGCAAAGCCTTGAGGAGCAAAGCCTTGTAAATGAAAGAGTGGAGGAACCTGAGTCTATCACCAATAATAGACCACGAAGGGTAATTCGAAAACCTATAAGGTTTGATGATACGATAGCATATGCTTTCTCTATGATTGATAGAGTTCCCAACATACGTATTGAGGCTTGA

mRNA sequence

ATGGTAGAGAATCAGACGGACAGGAAAATCAAAAAGTTGAGATCAGACAACGGTGGAGAATATACTTATGATCCATTCCTTAAAGTATGTCGAGATGAAGGGATCGTTCGACACTTCGCTGTTCCTAGTAAGCCACAACAAAATGGAGTTGCTGAGAGAATGAACCAGACATTAATAGAGAAGATTCGATGCATTTTGTCTCAAGCAGGATTGAGTAAGGCATTTTGGGCTGAGGCTCTCAGCTATGCAGTTCACCTGGTGAATCGTTTACCTGTTTCTGGAAATGGTGGGAAAACTCCGCTTGAGGTGGAGAAGGTGGTGTTCTCTCCTGATATGGTTGCTCCTACTGGAGAACCTATTGATCAGGTAGATAATAACTCTGATGTCTTAGAACAGGAAGAGCAAAACCTTGATGAGCAAAGCCTTGAGGAGCAAAGCCTTGTAAATGAAAGAGTGGAGGAACCTGAGTCTATCACCAATAATAGACCACGAAGGGTAATTCGAAAACCTATAAGGTTTGATGATACGATAGCATATGCTTTCTCTATGATTGATAGAGTTCCCAACATACGTATTGAGGCTTGA

Coding sequence (CDS)

ATGGTAGAGAATCAGACGGACAGGAAAATCAAAAAGTTGAGATCAGACAACGGTGGAGAATATACTTATGATCCATTCCTTAAAGTATGTCGAGATGAAGGGATCGTTCGACACTTCGCTGTTCCTAGTAAGCCACAACAAAATGGAGTTGCTGAGAGAATGAACCAGACATTAATAGAGAAGATTCGATGCATTTTGTCTCAAGCAGGATTGAGTAAGGCATTTTGGGCTGAGGCTCTCAGCTATGCAGTTCACCTGGTGAATCGTTTACCTGTTTCTGGAAATGGTGGGAAAACTCCGCTTGAGGTGGAGAAGGTGGTGTTCTCTCCTGATATGGTTGCTCCTACTGGAGAACCTATTGATCAGGTAGATAATAACTCTGATGTCTTAGAACAGGAAGAGCAAAACCTTGATGAGCAAAGCCTTGAGGAGCAAAGCCTTGTAAATGAAAGAGTGGAGGAACCTGAGTCTATCACCAATAATAGACCACGAAGGGTAATTCGAAAACCTATAAGGTTTGATGATACGATAGCATATGCTTTCTCTATGATTGATAGAGTTCCCAACATACGTATTGAGGCTTGA
Homology
[Close]
BLAST of CmoCh09G012510 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.9e-22
Identity = 49/91 (53.85%), Postives = 63/91 (69.23%), Query Frame = 1 

Query: 1   MVENQTDRKIKKLRSDNGGEYTYDPFLKVCRDEGIVRHFAVPSKPQQNGVAERMNQTLIE 60
           +VE +T RK+K+LRSDNGGEYT   F + C   GI     VP  PQ NGVAERMN+T++E
Sbjct: 535 LVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVE 594

Query: 61  KIRCILSQAGLSKAFWAEALSYAVHLVNRLP 92
           K+R +L  A L K+FW EA+  A +L+NR P
Sbjct: 595 KVRSMLRMAKLPKSFWGEAVQTACYLINRSP 625

[Close]
BLAST of CmoCh09G012510 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 82.0 bits (201), Expect = 7.7e-15
Identity = 42/97 (43.30%), Postives = 58/97 (59.79%), Query Frame = 1 

Query: 9   KIKKLRSDNGGEYTYDPFLKVCRDEGIVRHFAVPSKPQQNGVAERMNQTLIEKIRCILSQ 68
           K+  L  DNG EY  +   + C  +GI  H  VP  PQ NGV+ERM +T+ EK R ++S 
Sbjct: 543 KVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSG 602

Query: 69  AGLSKAFWAEALSYAVHLVNRLPVSG--NGGKTPLEV 104
           A L K+FW EA+  A +L+NR+P     +  KTP E+
Sbjct: 603 AKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEM 639

[Close]
BLAST of CmoCh09G012510 vs. Swiss-Prot
Match: YO21B_YEAST (Transposon Ty2-OR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-OR1 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.6e-07
Identity = 32/127 (25.20%), Postives = 58/127 (45.67%), Query Frame = 1 

Query: 2   VENQTDRKIKKLRSDNGGEYTYDPFLKVCRDEGIVRHFAVPSKPQQNGVAERMNQTLIEK 61
           ++NQ + ++  ++ D G EYT     K   + GI   +   +  + +GVAER+N+TL+  
Sbjct: 718 IKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLND 777

Query: 62  IRCILSQAGLSKAFWAEALSYAVHLVNRLPVSGNGGKTPLEVEKVVFSPDMVAPTGEPID 121
            R +L  +GL    W  A+ ++  + N L    N                 + P G+P+ 
Sbjct: 778 CRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKNDKSARQHAGLAGLDITTILPFGQPVI 837

Query: 122 QVDNNSD 129
             ++N D
Sbjct: 838 VNNHNPD 844

[Close]
BLAST of CmoCh09G012510 vs. Swiss-Prot
Match: YB21B_YEAST (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.6e-07
Identity = 32/127 (25.20%), Postives = 58/127 (45.67%), Query Frame = 1 

Query: 2   VENQTDRKIKKLRSDNGGEYTYDPFLKVCRDEGIVRHFAVPSKPQQNGVAERMNQTLIEK 61
           ++NQ + ++  ++ D G EYT     K   + GI   +   +  + +GVAER+N+TL+  
Sbjct: 718 IKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLND 777

Query: 62  IRCILSQAGLSKAFWAEALSYAVHLVNRLPVSGNGGKTPLEVEKVVFSPDMVAPTGEPID 121
            R +L  +GL    W  A+ ++  + N L    N                 + P G+P+ 
Sbjct: 778 CRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKNDKSARQHAGLAGLDITTILPFGQPVI 837

Query: 122 QVDNNSD 129
             ++N D
Sbjct: 838 VNNHNPD 844

[Close]
BLAST of CmoCh09G012510 vs. Swiss-Prot
Match: YC21B_YEAST (Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-C PE=3 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 1.6e-07
Identity = 32/127 (25.20%), Postives = 58/127 (45.67%), Query Frame = 1 

Query: 2   VENQTDRKIKKLRSDNGGEYTYDPFLKVCRDEGIVRHFAVPSKPQQNGVAERMNQTLIEK 61
           ++NQ + ++  ++ D G EYT     K   + GI   +   +  + +GVAER+N+TL+  
Sbjct: 718 IKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLND 777

Query: 62  IRCILSQAGLSKAFWAEALSYAVHLVNRLPVSGNGGKTPLEVEKVVFSPDMVAPTGEPID 121
            R +L  +GL    W  A+ ++  + N L    N                 + P G+P+ 
Sbjct: 778 CRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKNDKSARQHAGLAGLDITTILPFGQPVI 837

Query: 122 QVDNNSD 129
             ++N D
Sbjct: 838 VNNHNPD 844

[Close]
BLAST of CmoCh09G012510 vs. TrEMBL
Match: A0A151RYL1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_030746 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.3e-34
Identity = 71/101 (70.30%), Postives = 80/101 (79.21%), Query Frame = 1 

Query: 2   VENQTDRKIKKLRSDNGGEYTYDPFLKVCRDEGIVRHFAVPSKPQQNGVAERMNQTLIEK 61
           +E QT RKIK  R+DNGGEYT DPF K C + GIVRHF V   PQQNGVAERMN+TL+EK
Sbjct: 320 METQTGRKIKHFRTDNGGEYTSDPFKKACEESGIVRHFTVKHTPQQNGVAERMNRTLLEK 379

Query: 62  IRCILSQAGLSKAFWAEALSYAVHLVNRLPVSGNGGKTPLE 103
           +RC+LS AGL K FWAEA+ YA HL+NRLP S  GGKTPLE
Sbjct: 380 VRCMLSNAGLGKQFWAEAVVYASHLINRLPSSAIGGKTPLE 420

[Close]
BLAST of CmoCh09G012510 vs. TrEMBL
Match: A0A068VDJ5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00010516001 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.3e-34
Identity = 72/102 (70.59%), Postives = 84/102 (82.35%), Query Frame = 1 

Query: 2   VENQTDRKIKKLRSDNGGEYTYDPFLKVCRDEGIVRHFAVPSKPQQNGVAERMNQTLIEK 61
           VENQT RKIK LR+DNGGEY  DPF K+C++ GIVRHF V   PQQNGV+E MN+TL+EK
Sbjct: 557 VENQTGRKIKILRTDNGGEYKSDPFQKICQECGIVRHFIVRKIPQQNGVSEHMNKTLVEK 616

Query: 62  IRCILSQAGLSKAFWAEALSYAVHLVNRLPVSGNGGKTPLEV 104
           +RC+LS AGL + FWAEA++YA HLVNRLP S  GGKTPLEV
Sbjct: 617 VRCMLSNAGLGRKFWAEAVTYAQHLVNRLPSSAIGGKTPLEV 658

[Close]
BLAST of CmoCh09G012510 vs. TrEMBL
Match: G8DCX4_PHAVU (Putative Ty-1 copia retrotransposon OS=Phaseolus vulgaris PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.2e-34
Identity = 71/102 (69.61%), Postives = 83/102 (81.37%), Query Frame = 1 

Query: 2   VENQTDRKIKKLRSDNGGEYTYDPFLKVCRDEGIVRHFAVPSKPQQNGVAERMNQTLIEK 61
           VENQT RKIK LR+DNGGEY  DPFLKVC+D GI+RHF +   PQQNGV+ERMN+ L+EK
Sbjct: 525 VENQTGRKIKVLRTDNGGEYKSDPFLKVCQDCGIIRHFTIRKTPQQNGVSERMNKILVEK 584

Query: 62  IRCILSQAGLSKAFWAEALSYAVHLVNRLPVSGNGGKTPLEV 104
           +RC+LS A L + FWAEA++YA HLVNRLP S   GKTPLEV
Sbjct: 585 VRCMLSNAELGRKFWAEAVTYAQHLVNRLPSSAIDGKTPLEV 626

[Close]
BLAST of CmoCh09G012510 vs. TrEMBL
Match: A0A077SK66_PHAVU (Putative Ty-1 copia retrotransposon OS=Phaseolus vulgaris PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.2e-32
Identity = 70/102 (68.63%), Postives = 81/102 (79.41%), Query Frame = 1 

Query: 2   VENQTDRKIKKLRSDNGGEYTYDPFLKVCRDEGIVRHFAVPSKPQQNGVAERMNQTLIEK 61
           VEN T RKIK L++DNGGEY  DPFL VC+D GIVRHF V   PQQNGV+ERMN+TL+EK
Sbjct: 471 VENHTGRKIKVLQTDNGGEYKSDPFLNVCQDCGIVRHFTVRKTPQQNGVSERMNKTLVEK 530

Query: 62  IRCILSQAGLSKAFWAEALSYAVHLVNRLPVSGNGGKTPLEV 104
           + C+LS A L + FWAEA++YA HLVNRLP S   GKTPLEV
Sbjct: 531 VCCMLSNAELGREFWAEAVTYAQHLVNRLPSSAIDGKTPLEV 572

[Close]
BLAST of CmoCh09G012510 vs. TrEMBL
Match: A0A068VB18_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00010517001 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.8e-31
Identity = 68/102 (66.67%), Postives = 81/102 (79.41%), Query Frame = 1 

Query: 2   VENQTDRKIKKLRSDNGGEYTYDPFLKVCRDEGIVRHFAVPSKPQQNGVAERMNQTLIEK 61
           VENQT RKIK LR+DNGGEY  DPF K+ ++ GIV+HF V   PQQNGV+ERMN+TL+EK
Sbjct: 165 VENQTGRKIKILRTDNGGEYKSDPFQKIGQECGIVQHFTVRKTPQQNGVSERMNKTLVEK 224

Query: 62  IRCILSQAGLSKAFWAEALSYAVHLVNRLPVSGNGGKTPLEV 104
           + C+LS A L + FWAE ++YA HLVNRLP S  GGKTPLEV
Sbjct: 225 VHCMLSNARLGRKFWAETVTYAQHLVNRLPSSAIGGKTPLEV 266

[Close]
BLAST of CmoCh09G012510 vs. TAIR10
Match: ATMG00710.1 (ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 48.1 bits (113), Expect = 7.0e-06
Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 1 

Query: 54  MNQTLIEKIRCILSQAGLSKAFWAEALSYAVHLVNRLPVSGNGGKTPLEV 104
           MN+T+IEK+R +L + GL K F A+A + AVH++N+ P +      P EV
Sbjct: 1   MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEV 50

[Close]
BLAST of CmoCh09G012510 vs. NCBI nr
Match: gi|1012336336|gb|KYP47640.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])

HSP 1 Score: 153.7 bits (387), Expect = 3.3e-34
Identity = 71/101 (70.30%), Postives = 80/101 (79.21%), Query Frame = 1 

Query: 2   VENQTDRKIKKLRSDNGGEYTYDPFLKVCRDEGIVRHFAVPSKPQQNGVAERMNQTLIEK 61
           +E QT RKIK  R+DNGGEYT DPF K C + GIVRHF V   PQQNGVAERMN+TL+EK
Sbjct: 320 METQTGRKIKHFRTDNGGEYTSDPFKKACEESGIVRHFTVKHTPQQNGVAERMNRTLLEK 379

Query: 62  IRCILSQAGLSKAFWAEALSYAVHLVNRLPVSGNGGKTPLE 103
           +RC+LS AGL K FWAEA+ YA HL+NRLP S  GGKTPLE
Sbjct: 380 VRCMLSNAGLGKQFWAEAVVYASHLINRLPSSAIGGKTPLE 420

[Close]
BLAST of CmoCh09G012510 vs. NCBI nr
Match: gi|661878516|emb|CDP17738.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 153.7 bits (387), Expect = 3.3e-34
Identity = 72/102 (70.59%), Postives = 84/102 (82.35%), Query Frame = 1 

Query: 2   VENQTDRKIKKLRSDNGGEYTYDPFLKVCRDEGIVRHFAVPSKPQQNGVAERMNQTLIEK 61
           VENQT RKIK LR+DNGGEY  DPF K+C++ GIVRHF V   PQQNGV+E MN+TL+EK
Sbjct: 557 VENQTGRKIKILRTDNGGEYKSDPFQKICQECGIVRHFIVRKIPQQNGVSEHMNKTLVEK 616

Query: 62  IRCILSQAGLSKAFWAEALSYAVHLVNRLPVSGNGGKTPLEV 104
           +RC+LS AGL + FWAEA++YA HLVNRLP S  GGKTPLEV
Sbjct: 617 VRCMLSNAGLGRKFWAEAVTYAQHLVNRLPSSAIGGKTPLEV 658

[Close]
BLAST of CmoCh09G012510 vs. NCBI nr
Match: gi|353685482|gb|AER13159.1| (putative Ty-1 copia retrotransposon [Phaseolus vulgaris])

HSP 1 Score: 152.5 bits (384), Expect = 7.4e-34
Identity = 71/102 (69.61%), Postives = 83/102 (81.37%), Query Frame = 1 

Query: 2   VENQTDRKIKKLRSDNGGEYTYDPFLKVCRDEGIVRHFAVPSKPQQNGVAERMNQTLIEK 61
           VENQT RKIK LR+DNGGEY  DPFLKVC+D GI+RHF +   PQQNGV+ERMN+ L+EK
Sbjct: 525 VENQTGRKIKVLRTDNGGEYKSDPFLKVCQDCGIIRHFTIRKTPQQNGVSERMNKILVEK 584

Query: 62  IRCILSQAGLSKAFWAEALSYAVHLVNRLPVSGNGGKTPLEV 104
           +RC+LS A L + FWAEA++YA HLVNRLP S   GKTPLEV
Sbjct: 585 VRCMLSNAELGRKFWAEAVTYAQHLVNRLPSSAIDGKTPLEV 626

[Close]
BLAST of CmoCh09G012510 vs. NCBI nr
Match: gi|657965254|ref|XP_008374274.1| (PREDICTED: lysosomal alpha-mannosidase-like [Malus domestica])

HSP 1 Score: 150.2 bits (378), Expect = 3.7e-33
Identity = 69/103 (66.99%), Postives = 83/103 (80.58%), Query Frame = 1 

Query: 1   MVENQTDRKIKKLRSDNGGEYTYDPFLKVCRDEGIVRHFAVPSKPQQNGVAERMNQTLIE 60
           MVENQT RKIK LR DNGGEYT D F KV   EGIVRHF+V   PQQNGVA+R+N TL+E
Sbjct: 1   MVENQTGRKIKILRXDNGGEYTXDXFFKVXXXEGIVRHFSVRGTPQQNGVAZRLNXTLLE 60

Query: 61  KIRCILSQAGLSKAFWAEALSYAVHLVNRLPVSGNGGKTPLEV 104
           K+RC+LSQ+ LSK+FW EA++YA H++NRLP +   GKTP+EV
Sbjct: 61  KVRCMLSQSXLSKSFWXEAVNYACHIINRLPSAAXQGKTPMEV 103

[Close]
BLAST of CmoCh09G012510 vs. NCBI nr
Match: gi|670449696|emb|CDN96898.1| (putative Ty-1 copia retrotransposon [Phaseolus vulgaris])

HSP 1 Score: 147.1 bits (370), Expect = 3.1e-32
Identity = 70/102 (68.63%), Postives = 81/102 (79.41%), Query Frame = 1 

Query: 2   VENQTDRKIKKLRSDNGGEYTYDPFLKVCRDEGIVRHFAVPSKPQQNGVAERMNQTLIEK 61
           VEN T RKIK L++DNGGEY  DPFL VC+D GIVRHF V   PQQNGV+ERMN+TL+EK
Sbjct: 471 VENHTGRKIKVLQTDNGGEYKSDPFLNVCQDCGIVRHFTVRKTPQQNGVSERMNKTLVEK 530

Query: 62  IRCILSQAGLSKAFWAEALSYAVHLVNRLPVSGNGGKTPLEV 104
           + C+LS A L + FWAEA++YA HLVNRLP S   GKTPLEV
Sbjct: 531 VCCMLSNAELGREFWAEAVTYAQHLVNRLPSSAIDGKTPLEV 572

The following BLAST results are available for this feature:
BLAST of CmoCh09G012510 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC2.9e-2253.85Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
COPIA_DROME7.7e-1543.30Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
YO21B_YEAST1.6e-0725.20Transposon Ty2-OR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ... [more]
YB21B_YEAST1.6e-0725.20Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
YC21B_YEAST1.6e-0725.20Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
BLAST of CmoCh09G012510 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A151RYL1_CAJCA2.3e-3470.30Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu... [more]
A0A068VDJ5_COFCA2.3e-3470.59Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00010516001 PE=4 SV=1[more]
G8DCX4_PHAVU5.2e-3469.61Putative Ty-1 copia retrotransposon OS=Phaseolus vulgaris PE=4 SV=1[more]
A0A077SK66_PHAVU2.2e-3268.63Putative Ty-1 copia retrotransposon OS=Phaseolus vulgaris PE=4 SV=1[more]
A0A068VB18_COFCA1.8e-3166.67Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00010517001 PE=4 SV=1[more]
BLAST of CmoCh09G012510 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG00710.17.0e-0644.00ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
BLAST of CmoCh09G012510 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1012336336|gb|KYP47640.1|3.3e-3470.30Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca... [more]
gi|661878516|emb|CDP17738.1|3.3e-3470.59unnamed protein product [Coffea canephora][more]
gi|353685482|gb|AER13159.1|7.4e-3469.61putative Ty-1 copia retrotransposon [Phaseolus vulgaris][more]
gi|657965254|ref|XP_008374274.1|3.7e-3366.99PREDICTED: lysosomal alpha-mannosidase-like [Malus domestica][more]
gi|670449696|emb|CDN96898.1|3.1e-3268.63putative Ty-1 copia retrotransposon [Phaseolus vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G012510.1CmoCh09G012510.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 2..60
score: 9.7
IPR001584Integrase, catalytic corePROFILEPS50994INTEGRASEcoord: 1..108
score: 18
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 9..100
score: 1.8
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 8..103
score: 9.23
NoneNo IPR availableunknownCoilCoilcoord: 120..150
scor
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 4..180
score: 1.4
NoneNo IPR availablePANTHERPTHR11439:SF192SUBFAMILY NOT NAMEDcoord: 4..180
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh09G012510Cucurbita pepo (Zucchini)cmocpeB025
CmoCh09G012510Cucurbita pepo (Zucchini)cmocpeB035
CmoCh09G012510Bottle gourd (USVL1VR-Ls)cmolsiB025
CmoCh09G012510Cucumber (Gy14) v2cgybcmoB551
CmoCh09G012510Melon (DHL92) v3.6.1cmomedB000
CmoCh09G012510Silver-seed gourdcarcmoB0229
CmoCh09G012510Silver-seed gourdcarcmoB0929
CmoCh09G012510Cucumber (Chinese Long) v3cmocucB0024
CmoCh09G012510Watermelon (97103) v2cmowmbB028
CmoCh09G012510Watermelon (97103) v2cmowmbB033
CmoCh09G012510Wax gourdcmowgoB0001
CmoCh09G012510Cucurbita moschata (Rifu)cmocmoB021
CmoCh09G012510Cucumber (Gy14) v1cgycmoB0658
CmoCh09G012510Cucurbita maxima (Rimu)cmacmoB028
CmoCh09G012510Cucurbita maxima (Rimu)cmacmoB438
CmoCh09G012510Wild cucumber (PI 183967)cmocpiB020
CmoCh09G012510Cucumber (Chinese Long) v2cmocuB020
CmoCh09G012510Melon (DHL92) v3.5.1cmomeB000
CmoCh09G012510Watermelon (Charleston Gray)cmowcgB027
CmoCh09G012510Watermelon (97103) v1cmowmB011