CmoCh09G012300 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G012300
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DUF761 domain protein
Location	Cmo_Chr09 : 10513003 .. 10513299 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACGCAACAATAGGTCGAAGAAAGCTCACTCATCTTTCTCGATCTTCAACTTCTTCAAATTCAGAAGAGGTAGAAAGGAAGATCACAGCGACCACAGTGACTATTGGGACGAGATGCCAAGATCGAGCAAGGTATGGCCGAGCGATGAGGACAAAATGCATCGTTGGGTCGCTGAACCTGGCATTGATAGAAAAGCTAAGGATTACATTGACAGGATCTATCGAAACCGTGTTCTTGAATCTGAGCGACAAACTGTTACTTTACCGACCAGTGGAACAAAACTCGATTCGTAA

mRNA sequence

ATGGGACGCAACAATAGGTCGAAGAAAGCTCACTCATCTTTCTCGATCTTCAACTTCTTCAAATTCAGAAGAGGTAGAAAGGAAGATCACAGCGACCACAGTGACTATTGGGACGAGATGCCAAGATCGAGCAAGGTATGGCCGAGCGATGAGGACAAAATGCATCGTTGGGTCGCTGAACCTGGCATTGATAGAAAAGCTAAGGATTACATTGACAGGATCTATCGAAACCGTGTTCTTGAATCTGAGCGACAAACTGTTACTTTACCGACCAGTGGAACAAAACTCGATTCGTAA

Coding sequence (CDS)

ATGGGACGCAACAATAGGTCGAAGAAAGCTCACTCATCTTTCTCGATCTTCAACTTCTTCAAATTCAGAAGAGGTAGAAAGGAAGATCACAGCGACCACAGTGACTATTGGGACGAGATGCCAAGATCGAGCAAGGTATGGCCGAGCGATGAGGACAAAATGCATCGTTGGGTCGCTGAACCTGGCATTGATAGAAAAGCTAAGGATTACATTGACAGGATCTATCGAAACCGTGTTCTTGAATCTGAGCGACAAACTGTTACTTTACCGACCAGTGGAACAAAACTCGATTCGTAA

Homology

[Close]

BLAST of CmoCh09G012300 vs. TrEMBL
Match: A0A0A0KBW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.3e-33
Identity = 74/92 (80.43%), Postives = 79/92 (85.87%), Query Frame = 1


Query: 5  NRSKKAHSSFSIFNFFKFRRGRKEDHSDHSDYW-DEMPRSSKVWPSDEDKMHRWVAEPGI 64
          NR KK+HSSFSIF+FFK RRGRK DH DH   W DEMPRS+KVWPSDEDK H WVAEPGI
Sbjct: 4  NRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEPGI 63

Query: 65 DRKAKDYIDRIYRNRVLESERQTVTLPTSGTK 96
          DRKAKDYIDRIYRNRV ESERQTVT+  +GTK
Sbjct: 64 DRKAKDYIDRIYRNRVFESERQTVTISPNGTK 95

[Close]

BLAST of CmoCh09G012300 vs. TrEMBL
Match: A0A0A0K7Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.8e-33
Identity = 72/92 (78.26%), Postives = 79/92 (85.87%), Query Frame = 1


Query: 5  NRSKKAHSSFSIFNFFKFRRGRKEDHSDHSDYW-DEMPRSSKVWPSDEDKMHRWVAEPGI 64
          NR KK+HSSFSIF+FFK +RGRK DH DH   W DEMPRS+KVWPSDEDK H W+AEPGI
Sbjct: 4  NRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGI 63

Query: 65 DRKAKDYIDRIYRNRVLESERQTVTLPTSGTK 96
          DRKAKDYIDRIYRNRV ESERQTVT+  +GTK
Sbjct: 64 DRKAKDYIDRIYRNRVFESERQTVTISPNGTK 95

[Close]

BLAST of CmoCh09G012300 vs. TrEMBL
Match: A0A0A0KAK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.8e-33
Identity = 75/96 (78.12%), Postives = 80/96 (83.33%), Query Frame = 1


Query: 1  MGRNNRSKKAHSSFSIFNFFKFRRGRKEDHSDHS-DYWDEMPRSSKVWPSDEDKMHRWVA 60
          MG NNR KKAH+SFSIF+FFK RRGRK DH +HS    DEMPRS KVWPSDEDK H WVA
Sbjct: 1  MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVLESERQTVTLPTSGTK 96
          EPGIDRKAKDYIDRIYRNRV ESERQTVT+  +G K
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIK 96

[Close]

BLAST of CmoCh09G012300 vs. TrEMBL
Match: A0A0A0K8W0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-29
Identity = 65/93 (69.89%), Postives = 78/93 (83.87%), Query Frame = 1


Query: 1  MGRNNRSKKAHSSFSIFNFFKFRRGRKEDHSDHSDYWDEMPRSSKVWPSDEDKMHRWVAE 60
          MG ++R KK HSSFSIF+FFK +RGRK D  +H   W+++P SSKVWPSDEDK +RWVAE
Sbjct: 1  MGGSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVLESERQTVTLPTSG 94
          PGIDRKAKDYIDRIY+NRV E+ERQTVT+  +G
Sbjct: 61 PGIDRKAKDYIDRIYKNRVFETERQTVTIHPNG 93

[Close]

BLAST of CmoCh09G012300 vs. TrEMBL
Match: A0A0A0K8V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-27
Identity = 64/89 (71.91%), Postives = 71/89 (79.78%), Query Frame = 1


Query: 5  NRSKKAHSSFSIFNFFKFRRGRKEDHSDHSDYW-DEMPRSSKVWPSDEDKMHRWVAEPGI 64
          ++ KK+HSSFS F+F K +  RK DH DH   W DE  RS KVWPSDEDK H WVAEPGI
Sbjct: 4  HKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEPGI 63

Query: 65 DRKAKDYIDRIYRNRVLESERQTVTLPTS 93
          DRKAKDYIDRIYRNRV ESERQTVT+PT+
Sbjct: 64 DRKAKDYIDRIYRNRVFESERQTVTIPTN 92

[Close]

BLAST of CmoCh09G012300 vs. TAIR10
Match: AT3G05858.1 (AT3G05858.1 unknown protein)

HSP 1 Score: 69.3 bits (168), Expect = 1.5e-12
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 1


Query: 1  MGRNNRSKKAHSS--FSIFNFFKFRRGRKEDHSDHSDYWDEMPRSSKVWPSDEDKMHRWV 60
          MG  NRS   HSS  FS+F+FFK RR  + + +D S  WD+   + K   SDEDK + WV
Sbjct: 1  MGGKNRS---HSSKRFSLFSFFKTRRSHRVE-ADGS--WDDFGYTRKAMASDEDKRY-WV 60

Query: 61 AEPGIDRKAKDYIDRIYRNRVLESERQTVT 89
          AEPGIDRKA  +I + +  RV ESERQT++
Sbjct: 61 AEPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of CmoCh09G012300 vs. TAIR10
Match: AT5G26620.1 (AT5G26620.1 unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-09
Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = 1


Query: 26 RKEDHSDHSDY-WDEMPRSSKVWPSDEDKMHRWVAEPGIDRKAKDYIDRIYRNRVLESER 85
          R   H   +D  WD++  + K W SDEDK + WVAEPGIDRKA  +I + + +RV ESER
Sbjct: 5  RSSHHRVEADASWDDVIYTRKAWASDEDKRY-WVAEPGIDRKASAFIAKFHASRVSESER 64

Query: 86 QTV 88
          QT+
Sbjct: 65 QTL 66

[Close]

BLAST of CmoCh09G012300 vs. NCBI nr
Match: gi|700190663|gb|KGN45867.1| (hypothetical protein Csa_6G014870 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.9e-33
Identity = 74/92 (80.43%), Postives = 79/92 (85.87%), Query Frame = 1


Query: 5  NRSKKAHSSFSIFNFFKFRRGRKEDHSDHSDYW-DEMPRSSKVWPSDEDKMHRWVAEPGI 64
          NR KK+HSSFSIF+FFK RRGRK DH DH   W DEMPRS+KVWPSDEDK H WVAEPGI
Sbjct: 4  NRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEPGI 63

Query: 65 DRKAKDYIDRIYRNRVLESERQTVTLPTSGTK 96
          DRKAKDYIDRIYRNRV ESERQTVT+  +GTK
Sbjct: 64 DRKAKDYIDRIYRNRVFESERQTVTISPNGTK 95

[Close]

BLAST of CmoCh09G012300 vs. NCBI nr
Match: gi|700190665|gb|KGN45869.1| (hypothetical protein Csa_6G014890 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 5.4e-33
Identity = 75/96 (78.12%), Postives = 80/96 (83.33%), Query Frame = 1


Query: 1  MGRNNRSKKAHSSFSIFNFFKFRRGRKEDHSDHS-DYWDEMPRSSKVWPSDEDKMHRWVA 60
          MG NNR KKAH+SFSIF+FFK RRGRK DH +HS    DEMPRS KVWPSDEDK H WVA
Sbjct: 1  MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVLESERQTVTLPTSGTK 96
          EPGIDRKAKDYIDRIYRNRV ESERQTVT+  +G K
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIK 96

[Close]

BLAST of CmoCh09G012300 vs. NCBI nr
Match: gi|700190666|gb|KGN45870.1| (hypothetical protein Csa_6G014900 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 5.4e-33
Identity = 72/92 (78.26%), Postives = 79/92 (85.87%), Query Frame = 1


Query: 5  NRSKKAHSSFSIFNFFKFRRGRKEDHSDHSDYW-DEMPRSSKVWPSDEDKMHRWVAEPGI 64
          NR KK+HSSFSIF+FFK +RGRK DH DH   W DEMPRS+KVWPSDEDK H W+AEPGI
Sbjct: 4  NRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGI 63

Query: 65 DRKAKDYIDRIYRNRVLESERQTVTLPTSGTK 96
          DRKAKDYIDRIYRNRV ESERQTVT+  +GTK
Sbjct: 64 DRKAKDYIDRIYRNRVFESERQTVTISPNGTK 95

[Close]

BLAST of CmoCh09G012300 vs. NCBI nr
Match: gi|700190669|gb|KGN45873.1| (hypothetical protein Csa_6G016905 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 2.8e-29
Identity = 65/93 (69.89%), Postives = 78/93 (83.87%), Query Frame = 1


Query: 1  MGRNNRSKKAHSSFSIFNFFKFRRGRKEDHSDHSDYWDEMPRSSKVWPSDEDKMHRWVAE 60
          MG ++R KK HSSFSIF+FFK +RGRK D  +H   W+++P SSKVWPSDEDK +RWVAE
Sbjct: 1  MGGSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVLESERQTVTLPTSG 94
          PGIDRKAKDYIDRIY+NRV E+ERQTVT+  +G
Sbjct: 61 PGIDRKAKDYIDRIYKNRVFETERQTVTIHPNG 93

[Close]

BLAST of CmoCh09G012300 vs. NCBI nr
Match: gi|700190664|gb|KGN45868.1| (hypothetical protein Csa_6G014880 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 2.6e-27
Identity = 64/89 (71.91%), Postives = 71/89 (79.78%), Query Frame = 1


Query: 5  NRSKKAHSSFSIFNFFKFRRGRKEDHSDHSDYW-DEMPRSSKVWPSDEDKMHRWVAEPGI 64
          ++ KK+HSSFS F+F K +  RK DH DH   W DE  RS KVWPSDEDK H WVAEPGI
Sbjct: 4  HKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEPGI 63

Query: 65 DRKAKDYIDRIYRNRVLESERQTVTLPTS 93
          DRKAKDYIDRIYRNRV ESERQTVT+PT+
Sbjct: 64 DRKAKDYIDRIYRNRVFESERQTVTIPTN 92

The following BLAST results are available for this feature:

BLAST of CmoCh09G012300 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh09G012300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBW1_CUCSA	1.3e-33	80.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0K7Y2_CUCSA	3.8e-33	78.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KAK6_CUCSA	3.8e-33	78.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1	[more]
A0A0A0K8W0_CUCSA	1.9e-29	69.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1	[more]
A0A0A0K8V3_CUCSA	1.8e-27	71.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1	[more]

BLAST of CmoCh09G012300 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05858.1	1.5e-12	51.11	unknown protein	[more]
AT5G26620.1	1.2e-09	50.79	unknown protein	[more]

BLAST of CmoCh09G012300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190663\|gb\|KGN45867.1\|	1.9e-33	80.43	hypothetical protein Csa_6G014870 [Cucumis sativus]	[more]
gi\|700190665\|gb\|KGN45869.1\|	5.4e-33	78.13	hypothetical protein Csa_6G014890 [Cucumis sativus]	[more]
gi\|700190666\|gb\|KGN45870.1\|	5.4e-33	78.26	hypothetical protein Csa_6G014900 [Cucumis sativus]	[more]
gi\|700190669\|gb\|KGN45873.1\|	2.8e-29	69.89	hypothetical protein Csa_6G016905 [Cucumis sativus]	[more]
gi\|700190664\|gb\|KGN45868.1\|	2.6e-27	71.91	hypothetical protein Csa_6G014880 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G012300.1	CmoCh09G012300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 2..87 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G012300	Wax gourd	cmowgoB0008
CmoCh09G012300	Cucumber (Gy14) v1	cgycmoB0991
CmoCh09G012300	Cucurbita maxima (Rimu)	cmacmoB028
CmoCh09G012300	Cucurbita maxima (Rimu)	cmacmoB444
CmoCh09G012300	Wild cucumber (PI 183967)	cmocpiB023
CmoCh09G012300	Cucumber (Chinese Long) v2	cmocuB022
CmoCh09G012300	Melon (DHL92) v3.5.1	cmomeB015
CmoCh09G012300	Watermelon (Charleston Gray)	cmowcgB024
CmoCh09G012300	Cucurbita pepo (Zucchini)	cmocpeB035
CmoCh09G012300	Bottle gourd (USVL1VR-Ls)	cmolsiB022
CmoCh09G012300	Bottle gourd (USVL1VR-Ls)	cmolsiB024
CmoCh09G012300	Cucumber (Gy14) v2	cgybcmoB683
CmoCh09G012300	Melon (DHL92) v3.6.1	cmomedB017
CmoCh09G012300	Cucumber (Chinese Long) v3	cmocucB0027
CmoCh09G012300	Watermelon (97103) v2	cmowmbB024
CmoCh09G012300	Watermelon (97103) v2	cmowmbB033