CmoCh09G012290 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G012290
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	BnaC03g34390D protein
Location	Cmo_Chr09 : 10509649 .. 10509945 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGTAACAATCGATCGAAGAAAGCACACTCATCTTTCTCGATCTTTAACTTTTTCAAATTCTGAAAAGGTTGAAAAGAAGATCACTGCGACCATGGTGCCTATTGGAACGAGATGCCAAGATTGGGCAAGGTGTGGCCGAGTGATGAAGACAAAACACATCGATGGGTTGCTGAACCAGGCATAGATAGAAAAGCCAAAGATTACATTGACAAGATCTATCGAAATCGTGTTTTTGAATCTAAGCGACAAATTGTTACTTTACCTGTCAATGGAACAAAACTCGATCTGTAA

mRNA sequence

ATGGGAGAAGATCACTGCGACCATGGTGCCTATTGGAACGAGATGCCAAGATTGGGCAAGGTGTGGCCGAGTGATGAAGACAAAACACATCGATGGGTTGCTGAACCAGGCATAGATAGAAAAGCCAAAGATTACATTGACAAGATCTATCGAAATCGTGTTTTTGAATCTAAGCGACAAATTGTTACTTTACCTGTCAATGGAACAAAACTCGATCTGTAA

Coding sequence (CDS)

ATGGGAGAAGATCACTGCGACCATGGTGCCTATTGGAACGAGATGCCAAGATTGGGCAAGGTGTGGCCGAGTGATGAAGACAAAACACATCGATGGGTTGCTGAACCAGGCATAGATAGAAAAGCCAAAGATTACATTGACAAGATCTATCGAAATCGTGTTTTTGAATCTAAGCGACAAATTGTTACTTTACCTGTCAATGGAACAAAACTCGATCTGTAA

Homology

[Close]

BLAST of CmoCh09G012290 vs. TrEMBL
Match: A0A0A0KBW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-23
Identity = 53/68 (77.94%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 4  DHCDHGAYW-NEMPRLGKVWPSDEDKTHRWVAEPGIDRKAKDYIDKIYRNRVFESKRQIV 63
          DH DHG  W +EMPR  KVWPSDEDK H WVAEPGIDRKAKDYID+IYRNRVFES+RQ V
Sbjct: 28 DHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTV 87

Query: 64 TLPVNGTK 71
          T+  NGTK
Sbjct: 88 TISPNGTK 95

[Close]

BLAST of CmoCh09G012290 vs. TrEMBL
Match: A0A0A0K7Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-23
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 4  DHCDHGAYW-NEMPRLGKVWPSDEDKTHRWVAEPGIDRKAKDYIDKIYRNRVFESKRQIV 63
          DH DHG  W +EMPR  KVWPSDEDK H W+AEPGIDRKAKDYID+IYRNRVFES+RQ V
Sbjct: 28 DHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDRKAKDYIDRIYRNRVFESERQTV 87

Query: 64 TLPVNGTK 71
          T+  NGTK
Sbjct: 88 TISPNGTK 95

[Close]

BLAST of CmoCh09G012290 vs. TrEMBL
Match: A0A0A0KAK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.9e-23
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 1


Query: 4  DHCDH-GAYWNEMPRLGKVWPSDEDKTHRWVAEPGIDRKAKDYIDKIYRNRVFESKRQIV 63
          DHC+H G+  +EMPR GKVWPSDEDK H WVAEPGIDRKAKDYID+IYRNRVFES+RQ V
Sbjct: 29 DHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTV 88

Query: 64 TLPVNGTK 71
          T+  NG K
Sbjct: 89 TISPNGIK 96

[Close]

BLAST of CmoCh09G012290 vs. TrEMBL
Match: A0A0A0K8V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.5e-22
Identity = 50/65 (76.92%), Postives = 54/65 (83.08%), Query Frame = 1


Query: 4  DHCDHGAYW-NEMPRLGKVWPSDEDKTHRWVAEPGIDRKAKDYIDKIYRNRVFESKRQIV 63
          DH DHG  W +E  R GKVWPSDEDK H WVAEPGIDRKAKDYID+IYRNRVFES+RQ V
Sbjct: 28 DHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTV 87

Query: 64 TLPVN 68
          T+P N
Sbjct: 88 TIPTN 92

[Close]

BLAST of CmoCh09G012290 vs. TrEMBL
Match: A0A0A0K8W0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.3e-19
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 1


Query: 4  DHCDHGAYWNEMPRLGKVWPSDEDKTHRWVAEPGIDRKAKDYIDKIYRNRVFESKRQIVT 63
          D  +HG  W ++P   KVWPSDEDK +RWVAEPGIDRKAKDYID+IY+NRVFE++RQ VT
Sbjct: 29 DVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAEPGIDRKAKDYIDRIYKNRVFETERQTVT 88

Query: 64 LPVNG 69
          +  NG
Sbjct: 89 IHPNG 93

[Close]

BLAST of CmoCh09G012290 vs. TAIR10
Match: AT5G26620.1 (AT5G26620.1 unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 8.7e-10
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1


Query: 10 AYWNEMPRLGKVWPSDEDKTHRWVAEPGIDRKAKDYIDKIYRNRVFESKRQIVTLP 66
          A W+++    K W SDEDK + WVAEPGIDRKA  +I K + +RV ES+RQ  TLP
Sbjct: 15 ASWDDVIYTRKAWASDEDKRY-WVAEPGIDRKASAFIAKFHASRVSESERQ--TLP 67

[Close]

BLAST of CmoCh09G012290 vs. TAIR10
Match: AT3G05858.1 (AT3G05858.1 unknown protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.4e-07
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 1


Query: 12 WNEMPRLGKVWPSDEDKTHRWVAEPGIDRKAKDYIDKIYRNRVFESKRQIVT 64
          W++     K   SDEDK + WVAEPGIDRKA  +I K +  RV ES+RQ ++
Sbjct: 33 WDDFGYTRKAMASDEDKRY-WVAEPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of CmoCh09G012290 vs. NCBI nr
Match: gi|700190663|gb|KGN45867.1| (hypothetical protein Csa_6G014870 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 1.7e-23
Identity = 53/68 (77.94%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 4  DHCDHGAYW-NEMPRLGKVWPSDEDKTHRWVAEPGIDRKAKDYIDKIYRNRVFESKRQIV 63
          DH DHG  W +EMPR  KVWPSDEDK H WVAEPGIDRKAKDYID+IYRNRVFES+RQ V
Sbjct: 28 DHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTV 87

Query: 64 TLPVNGTK 71
          T+  NGTK
Sbjct: 88 TISPNGTK 95

[Close]

BLAST of CmoCh09G012290 vs. NCBI nr
Match: gi|700190666|gb|KGN45870.1| (hypothetical protein Csa_6G014900 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 2.2e-23
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 4  DHCDHGAYW-NEMPRLGKVWPSDEDKTHRWVAEPGIDRKAKDYIDKIYRNRVFESKRQIV 63
          DH DHG  W +EMPR  KVWPSDEDK H W+AEPGIDRKAKDYID+IYRNRVFES+RQ V
Sbjct: 28 DHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDRKAKDYIDRIYRNRVFESERQTV 87

Query: 64 TLPVNGTK 71
          T+  NGTK
Sbjct: 88 TISPNGTK 95

[Close]

BLAST of CmoCh09G012290 vs. NCBI nr
Match: gi|700190665|gb|KGN45869.1| (hypothetical protein Csa_6G014890 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 8.4e-23
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 1


Query: 4  DHCDH-GAYWNEMPRLGKVWPSDEDKTHRWVAEPGIDRKAKDYIDKIYRNRVFESKRQIV 63
          DHC+H G+  +EMPR GKVWPSDEDK H WVAEPGIDRKAKDYID+IYRNRVFES+RQ V
Sbjct: 29 DHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTV 88

Query: 64 TLPVNGTK 71
          T+  NG K
Sbjct: 89 TISPNGIK 96

[Close]

BLAST of CmoCh09G012290 vs. NCBI nr
Match: gi|700190664|gb|KGN45868.1| (hypothetical protein Csa_6G014880 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 9.3e-22
Identity = 50/65 (76.92%), Postives = 54/65 (83.08%), Query Frame = 1


Query: 4  DHCDHGAYW-NEMPRLGKVWPSDEDKTHRWVAEPGIDRKAKDYIDKIYRNRVFESKRQIV 63
          DH DHG  W +E  R GKVWPSDEDK H WVAEPGIDRKAKDYID+IYRNRVFES+RQ V
Sbjct: 28 DHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTV 87

Query: 64 TLPVN 68
          T+P N
Sbjct: 88 TIPTN 92

[Close]

BLAST of CmoCh09G012290 vs. NCBI nr
Match: gi|700190669|gb|KGN45873.1| (hypothetical protein Csa_6G016905 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 3.3e-19
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 1


Query: 4  DHCDHGAYWNEMPRLGKVWPSDEDKTHRWVAEPGIDRKAKDYIDKIYRNRVFESKRQIVT 63
          D  +HG  W ++P   KVWPSDEDK +RWVAEPGIDRKAKDYID+IY+NRVFE++RQ VT
Sbjct: 29 DVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAEPGIDRKAKDYIDRIYKNRVFETERQTVT 88

Query: 64 LPVNG 69
          +  NG
Sbjct: 89 IHPNG 93

The following BLAST results are available for this feature:

BLAST of CmoCh09G012290 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh09G012290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBW1_CUCSA	1.2e-23	77.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0K7Y2_CUCSA	1.5e-23	76.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KAK6_CUCSA	5.9e-23	76.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1	[more]
A0A0A0K8V3_CUCSA	6.5e-22	76.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1	[more]
A0A0A0K8W0_CUCSA	2.3e-19	67.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1	[more]

BLAST of CmoCh09G012290 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26620.1	8.7e-10	55.36	unknown protein	[more]
AT3G05858.1	1.4e-07	50.00	unknown protein	[more]

BLAST of CmoCh09G012290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190663\|gb\|KGN45867.1\|	1.7e-23	77.94	hypothetical protein Csa_6G014870 [Cucumis sativus]	[more]
gi\|700190666\|gb\|KGN45870.1\|	2.2e-23	76.47	hypothetical protein Csa_6G014900 [Cucumis sativus]	[more]
gi\|700190665\|gb\|KGN45869.1\|	8.4e-23	76.47	hypothetical protein Csa_6G014890 [Cucumis sativus]	[more]
gi\|700190664\|gb\|KGN45868.1\|	9.3e-22	76.92	hypothetical protein Csa_6G014880 [Cucumis sativus]	[more]
gi\|700190669\|gb\|KGN45873.1\|	3.3e-19	67.69	hypothetical protein Csa_6G016905 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G012290.1	CmoCh09G012290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 20..62 score: 8.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G012290	Cucumber (Chinese Long) v3	cmocucB0027
CmoCh09G012290	Watermelon (97103) v2	cmowmbB024
CmoCh09G012290	Watermelon (97103) v2	cmowmbB033
CmoCh09G012290	Wax gourd	cmowgoB0008
CmoCh09G012290	Cucumber (Gy14) v1	cgycmoB0991
CmoCh09G012290	Cucurbita maxima (Rimu)	cmacmoB028
CmoCh09G012290	Cucurbita maxima (Rimu)	cmacmoB444
CmoCh09G012290	Wild cucumber (PI 183967)	cmocpiB023
CmoCh09G012290	Cucumber (Chinese Long) v2	cmocuB022
CmoCh09G012290	Melon (DHL92) v3.5.1	cmomeB015
CmoCh09G012290	Watermelon (Charleston Gray)	cmowcgB024
CmoCh09G012290	Cucurbita pepo (Zucchini)	cmocpeB035
CmoCh09G012290	Bottle gourd (USVL1VR-Ls)	cmolsiB022
CmoCh09G012290	Bottle gourd (USVL1VR-Ls)	cmolsiB024
CmoCh09G012290	Cucumber (Gy14) v2	cgybcmoB683
CmoCh09G012290	Melon (DHL92) v3.6.1	cmomedB017