CmoCh09G012250 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh09G012250
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionATP synthase epsilon chain, chloroplastic
LocationCmo_Chr09 : 10331246 .. 10332027 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCTCTACCTTGGAGGAATAGAAGTTTTGCAAATTCAAGAGAAGATCATGGTGAGATGAGACAGATCAACATGACCTGATCAAACCATTGTAACTCTTTGACAACACGAAAAAAACCATTGTAACTCTTTTGACAACACGAAAAAAACCATTGTAACTCTTTGACAACACGAAAAAACCATTGTTCAACTCTTTGACAACACGAAAAAAAAATCATTGTTCAACTCTTTGACAACACGAAAAAAAAAATCATTGTTCAACTCTTTGACAGCACGAAAAAAAACCATTGTTCTCTTTGACAACACGAAAAAAAACCACCATTGTTCTCTTTGACAACACGAAAAAAACTATTGTTCTCTTTGACAACACGAAAAAAACCATTGTTCTCTTTGACAACACGAAAAAAACCATTGTTCAACTCTTTAACAACACGAAAAAAACCATTATCAACTCTTTGACAACACGAAAAAAAACCATTATCAACTCTTTGACAACACGAAAAAAAACCATTATCTTGACAACACGAAAAAAACCATTGTCAACTCTTTAACAACACGAAAAAAAAACCATTGTCAACTCTTTAACAACACGAAAAAAAAAACCATTGTCAGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCGGAAGTTAACTTGAGGAAAGCTCAGGACAAGAGACAAACAATCGAGGCAAATTTAGCTCTCAAACGAGCTAGGACACGAGTAGAGGCTATCAATGGCGTACCTAGTTGA

mRNA sequence

ATGGGTTCTCTACCTTGGAGGAATAGAAGTTTTGCAAATTCAAGAGAAGATCATGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCGGAAGTTAACTTGAGGAAAGCTCAGGACAAGAGACAAACAATCGAGGCAAATTTAGCTCTCAAACGAGCTAGGACACGAGTAGAGGCTATCAATGGCGTACCTAGTTGA

Coding sequence (CDS)

ATGGGTTCTCTACCTTGGAGGAATAGAAGTTTTGCAAATTCAAGAGAAGATCATGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCGGAAGTTAACTTGAGGAAAGCTCAGGACAAGAGACAAACAATCGAGGCAAATTTAGCTCTCAAACGAGCTAGGACACGAGTAGAGGCTATCAATGGCGTACCTAGTTGA
Homology
[Close]
BLAST of CmoCh09G012250 vs. Swiss-Prot
Match: ATPE_CUCSA (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus GN=atpE PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-19
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1 

Query: 18  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS 74
           +DAEKASDIDPQEAQQTLEIAE NLRKAQ KRQTIEANLAL+RARTRVEAINGVPS
Sbjct: 81  NDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS 136

[Close]
BLAST of CmoCh09G012250 vs. Swiss-Prot
Match: ATPE_COFAR (ATP synthase epsilon chain, chloroplastic OS=Coffea arabica GN=atpE PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.0e-16
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 1 

Query: 18  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGV 72
           +DAEK SDIDPQEAQQTLEIAE NL+KA+ KRQTIEANLAL+RARTRVEAIN V
Sbjct: 79  NDAEKGSDIDPQEAQQTLEIAEANLKKAEGKRQTIEANLALRRARTRVEAINAV 132

[Close]
BLAST of CmoCh09G012250 vs. Swiss-Prot
Match: ATPE_CITSI (ATP synthase epsilon chain, chloroplastic OS=Citrus sinensis GN=atpE PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.0e-16
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = 1 

Query: 18  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGV 72
           +DAEK+SDIDPQEAQQTLEIAE NLRKA+ KRQTIEANLAL+RARTRVE IN +
Sbjct: 79  NDAEKSSDIDPQEAQQTLEIAEANLRKAESKRQTIEANLALRRARTRVEVINAI 132

[Close]
BLAST of CmoCh09G012250 vs. Swiss-Prot
Match: ATPE_EUCGG (ATP synthase epsilon chain, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=atpE PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.5e-16
Identity = 44/54 (81.48%), Postives = 50/54 (92.59%), Query Frame = 1 

Query: 18  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGV 72
           +DAEK SDIDPQEAQ+TLE+AE NLRKA+ KRQTIEANLAL+RARTRVEAIN +
Sbjct: 79  NDAEKGSDIDPQEAQETLELAEANLRKAEGKRQTIEANLALRRARTRVEAINAI 132

[Close]
BLAST of CmoCh09G012250 vs. Swiss-Prot
Match: ATPE_GOSHI (ATP synthase epsilon chain, chloroplastic OS=Gossypium hirsutum GN=atpE PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.5e-16
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 1 

Query: 18  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGV 72
           +DAEK SDIDPQEAQQ LEIAE NLRKA+ KRQTIEANLAL+RARTRVEAIN +
Sbjct: 79  NDAEKGSDIDPQEAQQALEIAEANLRKAEGKRQTIEANLALRRARTRVEAINAI 132

[Close]
BLAST of CmoCh09G012250 vs. TrEMBL
Match: G9HXF0_CITLA (ATP synthase epsilon chain, chloroplastic OS=Citrullus lanatus GN=atpE PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-17
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1 

Query: 18  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS 74
           +DAEKASDIDPQEAQQTLEIAE NLRKAQ KRQTIEANLAL+RARTRVEAINGVPS
Sbjct: 81  NDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS 136

[Close]
BLAST of CmoCh09G012250 vs. TrEMBL
Match: A0A0S2IG13_CUCPE (AtpE OS=Cucurbita pepo subsp. fraterna GN=atpE PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-17
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1 

Query: 18  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS 74
           +DAEKASDIDPQEAQQTLEIAE NLRKAQ KRQTIEANLAL+RARTRVEAINGVPS
Sbjct: 81  NDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS 136

[Close]
BLAST of CmoCh09G012250 vs. TrEMBL
Match: A0A0S2IGL3_CUCPE (AtpE OS=Cucurbita pepo var. ozarkana GN=atpE PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-17
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1 

Query: 18  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS 74
           +DAEKASDIDPQEAQQTLEIAE NLRKAQ KRQTIEANLAL+RARTRVEAINGVPS
Sbjct: 81  NDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS 136

[Close]
BLAST of CmoCh09G012250 vs. TrEMBL
Match: A0A0S2IDX1_9ROSI (AtpE OS=Cucurbita argyrosperma GN=atpE PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-17
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1 

Query: 18  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS 74
           +DAEKASDIDPQEAQQTLEIAE NLRKAQ KRQTIEANLAL+RARTRVEAINGVPS
Sbjct: 81  NDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS 136

[Close]
BLAST of CmoCh09G012250 vs. TrEMBL
Match: A0A0S2IFH2_9ROSI (AtpE OS=Cucurbita andreana GN=atpE PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-17
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1 

Query: 18  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS 74
           +DAEKASDIDPQEAQQTLEIAE NLRKAQ KRQTIEANLAL+RARTRVEAINGVPS
Sbjct: 81  NDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS 136

[Close]
BLAST of CmoCh09G012250 vs. TAIR10
Match: ATCG00470.1 (ATCG00470.1 ATP synthase epsilon chain)

HSP 1 Score: 84.3 bits (207), Expect = 3.3e-17
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = 1 

Query: 18  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGV 72
           +DAEK SDIDPQEAQQTLEIAE NLRKA+ KRQTIEANLAL+RARTRVEA+N +
Sbjct: 79  NDAEKNSDIDPQEAQQTLEIAEANLRKAEGKRQTIEANLALRRARTRVEALNTI 132

[Close]
BLAST of CmoCh09G012250 vs. NCBI nr
Match: gi|952954489|gb|ALO21851.1| (AtpE (plastid) [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-17
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1 

Query: 18  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS 74
           +DAEKASDIDPQEAQQTLEIAE NLRKAQ KRQTIEANLAL+RARTRVEAINGVPS
Sbjct: 81  NDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS 136

[Close]
BLAST of CmoCh09G012250 vs. NCBI nr
Match: gi|68164809|ref|YP_247605.1| (ATP synthase CF1 epsilon subunit [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-17
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1 

Query: 18  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS 74
           +DAEKASDIDPQEAQQTLEIAE NLRKAQ KRQTIEANLAL+RARTRVEAINGVPS
Sbjct: 81  NDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS 136

[Close]
BLAST of CmoCh09G012250 vs. NCBI nr
Match: gi|952954676|gb|ALO22035.1| (AtpE (plastid) [Cucurbita ecuadorensis])

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-17
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1 

Query: 18  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS 74
           +DAEKASDIDPQEAQQTLEIAE NLRKAQ KRQTIEANLAL+RARTRVEAINGVPS
Sbjct: 81  NDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS 136

[Close]
BLAST of CmoCh09G012250 vs. NCBI nr
Match: gi|952954770|gb|ALO22128.1| (AtpE (plastid) [Cucurbita ficifolia])

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-17
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1 

Query: 18  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS 74
           +DAEKASDIDPQEAQQTLEIAE NLRKAQ KRQTIEANLAL+RARTRVEAINGVPS
Sbjct: 83  NDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS 138

[Close]
BLAST of CmoCh09G012250 vs. NCBI nr
Match: gi|952955568|gb|ALO22914.1| (AtpE (plastid) [Cucurbita pedatifolia])

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-17
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1 

Query: 18  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS 74
           +DAEKASDIDPQEAQQTLEIAE NLRKAQ KRQTIEANLAL+RARTRVEAINGVPS
Sbjct: 81  NDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS 136

The following BLAST results are available for this feature:
BLAST of CmoCh09G012250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATPE_CUCSA1.5e-1992.86ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus GN=atpE PE=3 SV=1[more]
ATPE_COFAR2.0e-1685.19ATP synthase epsilon chain, chloroplastic OS=Coffea arabica GN=atpE PE=3 SV=1[more]
ATPE_CITSI2.0e-1683.33ATP synthase epsilon chain, chloroplastic OS=Citrus sinensis GN=atpE PE=3 SV=1[more]
ATPE_EUCGG4.5e-1681.48ATP synthase epsilon chain, chloroplastic OS=Eucalyptus globulus subsp. globulus... [more]
ATPE_GOSHI4.5e-1683.33ATP synthase epsilon chain, chloroplastic OS=Gossypium hirsutum GN=atpE PE=3 SV=... [more]
BLAST of CmoCh09G012250 vs. TrEMBL
Match NameE-valueIdentityDescription
G9HXF0_CITLA1.7e-1792.86ATP synthase epsilon chain, chloroplastic OS=Citrullus lanatus GN=atpE PE=3 SV=1[more]
A0A0S2IG13_CUCPE1.7e-1792.86AtpE OS=Cucurbita pepo subsp. fraterna GN=atpE PE=3 SV=1[more]
A0A0S2IGL3_CUCPE1.7e-1792.86AtpE OS=Cucurbita pepo var. ozarkana GN=atpE PE=3 SV=1[more]
A0A0S2IDX1_9ROSI1.7e-1792.86AtpE OS=Cucurbita argyrosperma GN=atpE PE=3 SV=1[more]
A0A0S2IFH2_9ROSI1.7e-1792.86AtpE OS=Cucurbita andreana GN=atpE PE=3 SV=1[more]
BLAST of CmoCh09G012250 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00470.13.3e-1783.33ATCG00470.1 ATP synthase epsilon chain[more]
BLAST of CmoCh09G012250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|952954489|gb|ALO21851.1|2.4e-1792.86AtpE (plastid) [Cucurbita argyrosperma subsp. sororia][more]
gi|68164809|ref|YP_247605.1|2.4e-1792.86ATP synthase CF1 epsilon subunit [Cucumis sativus][more]
gi|952954676|gb|ALO22035.1|2.4e-1792.86AtpE (plastid) [Cucurbita ecuadorensis][more]
gi|952954770|gb|ALO22128.1|2.4e-1792.86AtpE (plastid) [Cucurbita ficifolia][more]
gi|952955568|gb|ALO22914.1|2.4e-1792.86AtpE (plastid) [Cucurbita pedatifolia][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001469ATP_synth_F1_dsu/esu
IPR020547ATP_synth_F1_dsu/esu_C
Vocabulary: Cellular Component
TermDefinition
GO:0045261proton-transporting ATP synthase complex, catalytic core F(1)
Vocabulary: Molecular Function
TermDefinition
GO:0046933proton-transporting ATP synthase activity, rotational mechanism
GO:0046961proton-transporting ATPase activity, rotational mechanism
Vocabulary: Biological Process
TermDefinition
GO:0015986ATP synthesis coupled proton transport
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0006119 oxidative phosphorylation
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function GO:0005524 ATP binding
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G012250.1CmoCh09G012250.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001469ATPase, F1 complex, delta/epsilon subunitPANTHERPTHR13822ATP SYNTHASE DELTA/EPSILON CHAINcoord: 19..69
score: 5.2
IPR020547ATP synthase delta/epsilon subunit, C-terminal domainPFAMPF00401ATP-synt_DEcoord: 25..68
score: 1.
NoneNo IPR availableunknownCoilCoilcoord: 35..62
scor
NoneNo IPR availablePANTHERPTHR13822:SF8ATP SYNTHASE EPSILON CHAIN, CHLOROPLASTICcoord: 19..69
score: 5.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh09G012250Watermelon (97103) v2cmowmbB033
CmoCh09G012250Cucurbita maxima (Rimu)cmacmoB028
CmoCh09G012250Cucurbita maxima (Rimu)cmacmoB444
CmoCh09G012250Cucurbita pepo (Zucchini)cmocpeB035
CmoCh09G012250Bottle gourd (USVL1VR-Ls)cmolsiB022
CmoCh09G012250Bottle gourd (USVL1VR-Ls)cmolsiB024