CmoCh09G012240 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh09G012240
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPhot
LocationCmo_Chr09 : 9981273 .. 9982379 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTTAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTGAAAGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGATGTTATCCGTAGTGATAATTGATATGGAATCTACTCTTCCTATGCTATATATATAAGAGAGAGGAATGGTTTTTTAATGAAATTACAGTCATACCCTTTTAATTTTTAAATAGATTATTTGGCCGTTTGTTGAATTCGACACAATCCTAGGTTTGACCAATGCTTTGTTTCTCCTTTAATTCATGTTTGACCAATGCTGATTTTGAATCATTATATATGTGACTCCAAATTTCATTTGTTTATGTGCTTTTCGGAAAGTATAGTACTGTATTTCATTATAAAAATTGTAATCATCTATACCTAGTACGGTATTCTTTCGAATCTTAAATCAGTATTTATTGATGAAAATTTGGTATTTCGAATCTCAAATCAAATCTCAAATCGAATCTCAAAGAAGAGATAAGTCCTATAGGAACTACTGTAACAGAAACAATGGTATTTCCAATTATAGCCCCTCTAGGATGTAAAATATATCTTTTCTCACTATCCCCATAGTGTATGAGACCAATGTATGCATTTCGATTATGTCTTTTTCATTCCGTCGAAAATCGATTTTACGATATAGACGCTTACAACCTCCCCCTCTATGCCCTGCAGTAATGATTCCTTTGGCATTACGACCTTTACCACAAGGATGTTGTTCATAG

mRNA sequence

ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCCACTGAAAACCGTCTTTACATTGGATGGTTTGGGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGTGTATGAGACCAATGTATGCATTTCGATTATGTCTTTTTCATTCCGTCGAAAATCGATTTTACGATATAGACGCTTACAACCTCCCCCTCTATGCCCTGCAGTAATGATTCCTTTGGCATTACGACCTTTACCACAAGGATGTTGTTCATAG

Coding sequence (CDS)

ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCCACTGAAAACCGTCTTTACATTGGATGGTTTGGGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGTGTATGAGACCAATGTATGCATTTCGATTATGTCTTTTTCATTCCGTCGAAAATCGATTTTACGATATAGACGCTTACAACCTCCCCCTCTATGCCCTGCAGTAATGATTCCTTTGGCATTACGACCTTTACCACAAGGATGTTGTTCATAG
Homology
[Close]
BLAST of CmoCh09G012240 vs. Swiss-Prot
Match: PSBA_SINAL (Photosystem II protein D1 OS=Sinapis alba GN=psbA PE=3 SV=3)

HSP 1 Score: 115.9 bits (289), Expect = 3.1e-25
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 1 

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESESLWG               RFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESESLWG---------------RFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

[Close]
BLAST of CmoCh09G012240 vs. Swiss-Prot
Match: PSBA_BRANA (Photosystem II protein D1 OS=Brassica napus GN=psbA PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.1e-25
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 1 

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESESLWG               RFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESESLWG---------------RFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

[Close]
BLAST of CmoCh09G012240 vs. Swiss-Prot
Match: PSBA_BUXMI (Photosystem II protein D1 OS=Buxus microphylla GN=psbA PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.1e-25
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 1 

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESESLWG               RFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESESLWG---------------RFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

[Close]
BLAST of CmoCh09G012240 vs. Swiss-Prot
Match: PSBA_PANGI (Photosystem II protein D1 OS=Panax ginseng GN=psbA PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.1e-25
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 1 

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESESLWG               RFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESESLWG---------------RFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

[Close]
BLAST of CmoCh09G012240 vs. Swiss-Prot
Match: PSBA_DAUCA (Photosystem II protein D1 OS=Daucus carota GN=psbA PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.1e-25
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 1 

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESESLWG               RFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESESLWG---------------RFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

[Close]
BLAST of CmoCh09G012240 vs. TrEMBL
Match: A0A0S0ZJ97_ICAMA (Photosystem II protein D1 (Fragment) OS=Icacina mannii GN=psbA PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.5e-23
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 1 

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESESLWG               RFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESESLWG---------------RFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

[Close]
BLAST of CmoCh09G012240 vs. TrEMBL
Match: A0A0U5JWG1_9BRAS (Photosystem II protein D1 OS=Cochlearia islandica GN=psbA PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.5e-23
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 1 

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESESLWG               RFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESESLWG---------------RFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

[Close]
BLAST of CmoCh09G012240 vs. TrEMBL
Match: A0A0X8DBZ4_9APIA (Photosystem II protein D1 OS=Angelica gigas GN=psbA PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.5e-23
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 1 

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESESLWG               RFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESESLWG---------------RFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

[Close]
BLAST of CmoCh09G012240 vs. TrEMBL
Match: A0A0K1Z9Z1_9CARY (Photosystem II protein D1 OS=Silene antirrhina GN=psbA PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.5e-23
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 1 

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESESLWG               RFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESESLWG---------------RFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

[Close]
BLAST of CmoCh09G012240 vs. TrEMBL
Match: A0A0G3F0C8_ROSOF (Photosystem II protein D1 OS=Rosmarinus officinalis GN=psbA PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.5e-23
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 1 

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESESLWG               RFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESESLWG---------------RFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

[Close]
BLAST of CmoCh09G012240 vs. TAIR10
Match: ATCG00020.1 (ATCG00020.1 photosystem II reaction center protein A)

HSP 1 Score: 115.9 bits (289), Expect = 1.8e-26
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 1 

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESESLWG               RFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESESLWG---------------RFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

[Close]
BLAST of CmoCh09G012240 vs. NCBI nr
Match: gi|12963411|gb|AAK11253.1|AF329009_1 (PSII D1 protein (chloroplast) [Prunus yedoensis])

HSP 1 Score: 115.9 bits (289), Expect = 5.0e-23
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 1 

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESESLWG               RFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESESLWG---------------RFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

[Close]
BLAST of CmoCh09G012240 vs. NCBI nr
Match: gi|296033801|gb|ADG84778.1| (PsbA, partial (plastid) [Dianthus versicolor])

HSP 1 Score: 115.9 bits (289), Expect = 5.0e-23
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 1 

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESESLWG               RFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 7  MTAILERRESESLWG---------------RFCNWITSTENRLYIGWFGVLMIPTLLTAT 66

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 67 SVFIIAFIAAPPVDID 67

[Close]
BLAST of CmoCh09G012240 vs. NCBI nr
Match: gi|402239532|gb|AFQ39710.1| (photosystem II protein A, partial [Potentilla villosa])

HSP 1 Score: 115.9 bits (289), Expect = 5.0e-23
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 1 

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESESLWG               RFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESESLWG---------------RFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

[Close]
BLAST of CmoCh09G012240 vs. NCBI nr
Match: gi|119368479|ref|YP_913167.1| (PSII 32kd protein [Gossypium barbadense])

HSP 1 Score: 115.9 bits (289), Expect = 5.0e-23
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 1 

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESESLWG               RFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESESLWG---------------RFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

[Close]
BLAST of CmoCh09G012240 vs. NCBI nr
Match: gi|674228753|gb|KFK22538.1| (hypothetical protein AALP_AAs60132U000100, partial [Arabis alpina])

HSP 1 Score: 115.9 bits (289), Expect = 5.0e-23
Identity = 61/76 (80.26%), Postives = 61/76 (80.26%), Query Frame = 1 

Query: 1  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTAT 60
          MTAILERRESESLWG               RFCNWITSTENRLYIGWFGVLMIPTLLTAT
Sbjct: 1  MTAILERRESESLWG---------------RFCNWITSTENRLYIGWFGVLMIPTLLTAT 60

Query: 61 SVFIIAFIAAPPVDID 77
          SVFIIAFIAAPPVDID
Sbjct: 61 SVFIIAFIAAPPVDID 61

The following BLAST results are available for this feature:
BLAST of CmoCh09G012240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSBA_SINAL3.1e-2580.26Photosystem II protein D1 OS=Sinapis alba GN=psbA PE=3 SV=3[more]
PSBA_BRANA3.1e-2580.26Photosystem II protein D1 OS=Brassica napus GN=psbA PE=3 SV=1[more]
PSBA_BUXMI3.1e-2580.26Photosystem II protein D1 OS=Buxus microphylla GN=psbA PE=3 SV=1[more]
PSBA_PANGI3.1e-2580.26Photosystem II protein D1 OS=Panax ginseng GN=psbA PE=3 SV=1[more]
PSBA_DAUCA3.1e-2580.26Photosystem II protein D1 OS=Daucus carota GN=psbA PE=3 SV=1[more]
BLAST of CmoCh09G012240 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S0ZJ97_ICAMA3.5e-2380.26Photosystem II protein D1 (Fragment) OS=Icacina mannii GN=psbA PE=3 SV=1[more]
A0A0U5JWG1_9BRAS3.5e-2380.26Photosystem II protein D1 OS=Cochlearia islandica GN=psbA PE=3 SV=1[more]
A0A0X8DBZ4_9APIA3.5e-2380.26Photosystem II protein D1 OS=Angelica gigas GN=psbA PE=3 SV=1[more]
A0A0K1Z9Z1_9CARY3.5e-2380.26Photosystem II protein D1 OS=Silene antirrhina GN=psbA PE=3 SV=1[more]
A0A0G3F0C8_ROSOF3.5e-2380.26Photosystem II protein D1 OS=Rosmarinus officinalis GN=psbA PE=3 SV=1[more]
BLAST of CmoCh09G012240 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00020.11.8e-2680.26ATCG00020.1 photosystem II reaction center protein A[more]
BLAST of CmoCh09G012240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|12963411|gb|AAK11253.1|AF329009_15.0e-2380.26PSII D1 protein (chloroplast) [Prunus yedoensis][more]
gi|296033801|gb|ADG84778.1|5.0e-2380.26PsbA, partial (plastid) [Dianthus versicolor][more]
gi|402239532|gb|AFQ39710.1|5.0e-2380.26photosystem II protein A, partial [Potentilla villosa][more]
gi|119368479|ref|YP_913167.1|5.0e-2380.26PSII 32kd protein [Gossypium barbadense][more]
gi|674228753|gb|KFK22538.1|5.0e-2380.26hypothetical protein AALP_AAs60132U000100, partial [Arabis alpina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000484Photo_RC_L/M
Vocabulary: Biological Process
TermDefinition
GO:0019684photosynthesis, light reaction
GO:0009772photosynthetic electron transport in photosystem II
Vocabulary: Molecular Function
TermDefinition
GO:0045156electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0019684 photosynthesis, light reaction
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G012240.1CmoCh09G012240.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000484Photosynthetic reaction centre, L/MGENE3DG3DSA:1.20.85.10coord: 37..91
score: 1.
IPR000484Photosynthetic reaction centre, L/MPFAMPF00124Photo_RCcoord: 43..81
score: 4.
IPR000484Photosynthetic reaction centre, L/MunknownSSF81483Bacterial photosystem II reaction centre, L and M subunitscoord: 27..83
score: 4.58
NoneNo IPR availablePANTHERPTHR33149FAMILY NOT NAMEDcoord: 2..12
score: 4.9E-38coord: 28..76
score: 4.9
NoneNo IPR availablePANTHERPTHR33149:SF6SUBFAMILY NOT NAMEDcoord: 2..12
score: 4.9E-38coord: 28..76
score: 4.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh09G012240Cucurbita maxima (Rimu)cmacmoB028
CmoCh09G012240Cucurbita maxima (Rimu)cmacmoB444
CmoCh09G012240Cucurbita pepo (Zucchini)cmocpeB035
CmoCh09G012240Bottle gourd (USVL1VR-Ls)cmolsiB022
CmoCh09G012240Bottle gourd (USVL1VR-Ls)cmolsiB024
CmoCh09G012240Watermelon (97103) v2cmowmbB033