CmoCh09G011830 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh09G011830
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Ribulose bisphosphate carboxylase large chain) (4.1.1.39)
LocationCmo_Chr09 : 8476802 .. 8477455 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTGTAGGGAGGGACTTATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTATAAATTGACTTATTATACTCCTGAATATGAAACCAAAGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCGGGAGTTCCACCCGAGGAAGCGGGGGCCGCTGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGAAAATCAATATATTGCTTATGTAGCTTATCCCCTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTTACTTCCATTGTGGGTAATGTATTTGGATTCAAGGCTCTGCGTGCTCTACGTCTGGAGGATTTGCGAATCCCTACTGCTTATATTAAAACTTTCCAAGGCCCGCCTCATGGTATCCAGGTTGAAAGAGATAAATTGAACAAGTATGGTCGCCCTCTATTGGGATGTACTATTAAACCAAAATTGGGATTATCCGCTAAGAATTATGGTAGAGCAGTTTATGAATGTCTACGCGGTGGACTTGATTTTACCAAAGATGATGAAAACGTCAGGTGCCTAGTCTAG

mRNA sequence

ATGAGTTGTAGGGAGGGACTTATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTATAAATTGACTTATTATACTCCTGAATATGAAACCAAAGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCGGGAGTTCCACCCGAGGAAGCGGGGGCCGCTGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGAAAATCAATATATTGCTTATGTAGCTTATCCCCTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTTACTTCCATTGTGGGTAATGTATTTGGATTCAAGGCTCTGCGTGCTCTACGTCTGGAGGATTTGCGAATCCCTACTGCTTATATTAAAACTTTCCAAGGCCCGCCTCATGGTATCCAGGTTGAAAGAGATAAATTGAACAAGTATGGTCGCCCTCTATTGGGATGTACTATTAAACCAAAATTGGGATTATCCGCTAAGAATTATGGTAGAGCAGTTTATGAATGTCTACGCGGTGGACTTGATTTTACCAAAGATGATGAAAACGTCAGGTGCCTAGTCTAG

Coding sequence (CDS)

ATGAGTTGTAGGGAGGGACTTATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTATAAATTGACTTATTATACTCCTGAATATGAAACCAAAGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCGGGAGTTCCACCCGAGGAAGCGGGGGCCGCTGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGAAAATCAATATATTGCTTATGTAGCTTATCCCCTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTTACTTCCATTGTGGGTAATGTATTTGGATTCAAGGCTCTGCGTGCTCTACGTCTGGAGGATTTGCGAATCCCTACTGCTTATATTAAAACTTTCCAAGGCCCGCCTCATGGTATCCAGGTTGAAAGAGATAAATTGAACAAGTATGGTCGCCCTCTATTGGGATGTACTATTAAACCAAAATTGGGATTATCCGCTAAGAATTATGGTAGAGCAGTTTATGAATGTCTACGCGGTGGACTTGATTTTACCAAAGATGATGAAAACGTCAGGTGCCTAGTCTAG
Homology
[Close]
BLAST of CmoCh09G011830 vs. Swiss-Prot
Match: RBL_LACSA (Ribulose bisphosphate carboxylase large chain OS=Lactuca sativa GN=rbcL PE=3 SV=2)

HSP 1 Score: 428.3 bits (1100), Expect = 4.9e-119
Identity = 205/206 (99.51%), Postives = 206/206 (100.00%), Query Frame = 1 

Query: 8   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 67
           MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSI 127
           SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSI
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSI 120

Query: 128 VGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 187
           VGNVFGFKALRALRLEDLRIPTAY+KTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL
Sbjct: 121 VGNVFGFKALRALRLEDLRIPTAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 180

Query: 188 SAKNYGRAVYECLRGGLDFTKDDENV 214
           SAKNYGRAVYECLRGGLDFTKDDENV
Sbjct: 181 SAKNYGRAVYECLRGGLDFTKDDENV 206

[Close]
BLAST of CmoCh09G011830 vs. Swiss-Prot
Match: RBL_CUCSA (Ribulose bisphosphate carboxylase large chain OS=Cucumis sativus GN=rbcL PE=1 SV=5)

HSP 1 Score: 425.6 bits (1093), Expect = 3.2e-118
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 1 

Query: 8   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 67
           MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSI 127
           SSTGTWTTVWTDGLTSLDRYKGRCYGIEPV GEENQYIAYVAYPLDLFEEGSVTNMFTSI
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGEENQYIAYVAYPLDLFEEGSVTNMFTSI 120

Query: 128 VGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 187
           VGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL
Sbjct: 121 VGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 180

Query: 188 SAKNYGRAVYECLRGGLDFTKDDENV 214
           SAKNYGRAVYECLRGGLDFTKDDENV
Sbjct: 181 SAKNYGRAVYECLRGGLDFTKDDENV 206

[Close]
BLAST of CmoCh09G011830 vs. Swiss-Prot
Match: RBL_CICIN (Ribulose bisphosphate carboxylase large chain OS=Cichorium intybus GN=rbcL PE=3 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 5.4e-118
Identity = 204/206 (99.03%), Postives = 205/206 (99.51%), Query Frame = 1 

Query: 8   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 67
           MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSI 127
           SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSI
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSI 120

Query: 128 VGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 187
           VGNVFGFKALRALRLEDLRIPTAY+KTFQGP HGIQVERDKLNKYGRPLLGCTIKPKLGL
Sbjct: 121 VGNVFGFKALRALRLEDLRIPTAYVKTFQGPRHGIQVERDKLNKYGRPLLGCTIKPKLGL 180

Query: 188 SAKNYGRAVYECLRGGLDFTKDDENV 214
           SAKNYGRAVYECLRGGLDFTKDDENV
Sbjct: 181 SAKNYGRAVYECLRGGLDFTKDDENV 206

[Close]
BLAST of CmoCh09G011830 vs. Swiss-Prot
Match: RBL_FLAPR (Ribulose bisphosphate carboxylase large chain OS=Flaveria pringlei GN=rbcL PE=3 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 9.3e-118
Identity = 202/206 (98.06%), Postives = 205/206 (99.51%), Query Frame = 1 

Query: 8   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 67
           MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSI 127
           SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGE+NQYIAYVAYPLDLFEEGSVTNMFTSI
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEDNQYIAYVAYPLDLFEEGSVTNMFTSI 120

Query: 128 VGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 187
           VGNVFGFKALRALRLEDLRIPTAY+KTF+GPPHGIQVERDKLNKYGRPLLGCTIKPKLGL
Sbjct: 121 VGNVFGFKALRALRLEDLRIPTAYVKTFEGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 180

Query: 188 SAKNYGRAVYECLRGGLDFTKDDENV 214
           SAKNYGRA YECLRGGLDFTKDDENV
Sbjct: 181 SAKNYGRACYECLRGGLDFTKDDENV 206

[Close]
BLAST of CmoCh09G011830 vs. Swiss-Prot
Match: RBL_SOYBN (Ribulose bisphosphate carboxylase large chain OS=Glycine max GN=rbcL PE=1 SV=3)

HSP 1 Score: 423.7 bits (1088), Expect = 1.2e-117
Identity = 203/206 (98.54%), Postives = 205/206 (99.51%), Query Frame = 1 

Query: 8   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 67
           MSPQTETKASVGFKAGVKDYKLTYYTP+YETKDTDILAAFRVTPQPGVPPEEAGAAVAAE
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSI 127
           SSTGTWTTVWTDGLTSLDRYKGRCYG+EPV GEENQYIAYVAYPLDLFEEGSVTNMFTSI
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGLEPVAGEENQYIAYVAYPLDLFEEGSVTNMFTSI 120

Query: 128 VGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 187
           VGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL
Sbjct: 121 VGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 180

Query: 188 SAKNYGRAVYECLRGGLDFTKDDENV 214
           SAKNYGRAVYECLRGGLDFTKDDENV
Sbjct: 181 SAKNYGRAVYECLRGGLDFTKDDENV 206

[Close]
BLAST of CmoCh09G011830 vs. TrEMBL
Match: A0A0B2NQK2_GLYSO (Ribulose bisphosphate carboxylase large chain OS=Glycine soja GN=glysoja_042737 PE=3 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 1.2e-119
Identity = 209/213 (98.12%), Postives = 211/213 (99.06%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREG MSPQTETKASVGFKAGVKDYKLTYYTP+YETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGFMSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV 120
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG+EPV GEENQYIAYVAYPLDLFEEGSV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGLEPVAGEENQYIAYVAYPLDLFEEGSV 120

Query: 121 TNMFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCT 180
           TNMFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCT
Sbjct: 121 TNMFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCT 180

Query: 181 IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV 214
           IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV
Sbjct: 181 IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV 213

[Close]
BLAST of CmoCh09G011830 vs. TrEMBL
Match: A0A0C9S5Z3_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_12312_3435 transcribed RNA sequence OS=Wollemia nobilis PE=3 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 4.5e-119
Identity = 207/213 (97.18%), Postives = 210/213 (98.59%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREG MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGFMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV 120
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV 120

Query: 121 TNMFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCT 180
           TN+FTSIVGNVFGFKALRALRLEDLRIP AY+KTF+GPPHGIQVERDKLNKYGRPLLGCT
Sbjct: 121 TNLFTSIVGNVFGFKALRALRLEDLRIPIAYVKTFEGPPHGIQVERDKLNKYGRPLLGCT 180

Query: 181 IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV 214
           IKPKLGLSAKNYGRA YECLRGGLDFTKDDENV
Sbjct: 181 IKPKLGLSAKNYGRACYECLRGGLDFTKDDENV 213

[Close]
BLAST of CmoCh09G011830 vs. TrEMBL
Match: A0A0S3SDB6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G209900 PE=3 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 5.8e-119
Identity = 209/213 (98.12%), Postives = 210/213 (98.59%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREG MSPQTETKASVGFKAGVKDYKLTYYTP+YETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGFMSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV 120
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQYIAYVAYPLDLFEEGSV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVAGEENQYIAYVAYPLDLFEEGSV 120

Query: 121 TNMFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCT 180
           TNMFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCT
Sbjct: 121 TNMFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCT 180

Query: 181 IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV 214
           IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV
Sbjct: 181 IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV 213

[Close]
BLAST of CmoCh09G011830 vs. TrEMBL
Match: A0A0P0JRV7_SALBB (Ribulose bisphosphate carboxylase large chain OS=Salix babylonica GN=rbcL PE=3 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 7.6e-119
Identity = 208/213 (97.65%), Postives = 209/213 (98.12%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREGLMSPQTETK  VGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGLMSPQTETKTGVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV 120
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQYIAYVAYPLDLFEEGSV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVAGEENQYIAYVAYPLDLFEEGSV 120

Query: 121 TNMFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCT 180
           TNMFTSIVGNVFGFKALRALRLEDLRIPTAY+KTFQGPPHGIQVERDKLNKYGRPLLGCT
Sbjct: 121 TNMFTSIVGNVFGFKALRALRLEDLRIPTAYVKTFQGPPHGIQVERDKLNKYGRPLLGCT 180

Query: 181 IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV 214
           IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV
Sbjct: 181 IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV 213

[Close]
BLAST of CmoCh09G011830 vs. TrEMBL
Match: H6T1M0_9POAL (Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) OS=Potarophytum riparium GN=rbcL PE=3 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 1.3e-118
Identity = 209/213 (98.12%), Postives = 210/213 (98.59%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV 120
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQYIAYVAYPLDLFEEGSV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEENQYIAYVAYPLDLFEEGSV 120

Query: 121 TNMFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCT 180
           TNMFTSIVGNVFGFKALRALRLEDLRIPT+Y KTFQGPPHGIQVERDKLNKYGRPLLGCT
Sbjct: 121 TNMFTSIVGNVFGFKALRALRLEDLRIPTSYSKTFQGPPHGIQVERDKLNKYGRPLLGCT 180

Query: 181 IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV 214
           IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV
Sbjct: 181 IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV 213

[Close]
BLAST of CmoCh09G011830 vs. TAIR10
Match: ATCG00490.1 (ATCG00490.1 ribulose-bisphosphate carboxylases)

HSP 1 Score: 413.7 bits (1062), Expect = 7.1e-116
Identity = 199/206 (96.60%), Postives = 201/206 (97.57%), Query Frame = 1 

Query: 8   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 67
           MSPQTETKASVGFKAGVK+YKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE
Sbjct: 1   MSPQTETKASVGFKAGVKEYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSI 127
           SSTGTWTTVWTDGLTSLDRYKGRCY IEPVPGEE Q+IAYVAYPLDLFEEGSVTNMFTSI
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVPGEETQFIAYVAYPLDLFEEGSVTNMFTSI 120

Query: 128 VGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 187
           VGNVFGFKAL ALRLEDLRIP AY KTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL
Sbjct: 121 VGNVFGFKALAALRLEDLRIPPAYTKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 180

Query: 188 SAKNYGRAVYECLRGGLDFTKDDENV 214
           SAKNYGRAVYECLRGGLDFTKDDENV
Sbjct: 181 SAKNYGRAVYECLRGGLDFTKDDENV 206

[Close]
BLAST of CmoCh09G011830 vs. TAIR10
Match: AT2G07732.1 (AT2G07732.1 Ribulose bisphosphate carboxylase large chain, catalytic domain)

HSP 1 Score: 55.1 bits (131), Expect = 6.4e-08
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 1 

Query: 189 AKNYGRAVYECLRGGLDFTKDDENV 214
           AKNYGRAVYECLRGGL FTKDDENV
Sbjct: 14  AKNYGRAVYECLRGGLYFTKDDENV 38

[Close]
BLAST of CmoCh09G011830 vs. TAIR10
Match: ATMG00280.1 (ATMG00280.1 Ribulose bisphosphate carboxylase large chain, catalytic domain)

HSP 1 Score: 55.1 bits (131), Expect = 6.4e-08
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 1 

Query: 189 AKNYGRAVYECLRGGLDFTKDDENV 214
           AKNYGRAVYECLRGGL FTKDDENV
Sbjct: 14  AKNYGRAVYECLRGGLYFTKDDENV 38

[Close]
BLAST of CmoCh09G011830 vs. NCBI nr
Match: gi|74027109|gb|AAZ94659.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Cucumis sativus])

HSP 1 Score: 440.7 bits (1132), Expect = 1.5e-120
Identity = 212/213 (99.53%), Postives = 212/213 (99.53%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV 120
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPV GEENQYIAYVAYPLDLFEEGSV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGEENQYIAYVAYPLDLFEEGSV 120

Query: 121 TNMFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCT 180
           TNMFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCT
Sbjct: 121 TNMFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCT 180

Query: 181 IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV 214
           IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV
Sbjct: 181 IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV 213

[Close]
BLAST of CmoCh09G011830 vs. NCBI nr
Match: gi|734309146|gb|KHM99324.1| (Ribulose bisphosphate carboxylase large chain [Glycine soja])

HSP 1 Score: 437.2 bits (1123), Expect = 1.7e-119
Identity = 209/213 (98.12%), Postives = 211/213 (99.06%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREG MSPQTETKASVGFKAGVKDYKLTYYTP+YETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGFMSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV 120
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG+EPV GEENQYIAYVAYPLDLFEEGSV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGLEPVAGEENQYIAYVAYPLDLFEEGSV 120

Query: 121 TNMFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCT 180
           TNMFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCT
Sbjct: 121 TNMFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCT 180

Query: 181 IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV 214
           IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV
Sbjct: 181 IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV 213

[Close]
BLAST of CmoCh09G011830 vs. NCBI nr
Match: gi|965603635|dbj|BAT90812.1| (hypothetical protein VIGAN_06209900 [Vigna angularis var. angularis])

HSP 1 Score: 434.9 bits (1117), Expect = 8.4e-119
Identity = 209/213 (98.12%), Postives = 210/213 (98.59%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREG MSPQTETKASVGFKAGVKDYKLTYYTP+YETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGFMSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV 120
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQYIAYVAYPLDLFEEGSV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVAGEENQYIAYVAYPLDLFEEGSV 120

Query: 121 TNMFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCT 180
           TNMFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCT
Sbjct: 121 TNMFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCT 180

Query: 181 IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV 214
           IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV
Sbjct: 181 IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV 213

[Close]
BLAST of CmoCh09G011830 vs. NCBI nr
Match: gi|948299730|ref|YP_009179175.1| (ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Salix babylonica])

HSP 1 Score: 434.5 bits (1116), Expect = 1.1e-118
Identity = 208/213 (97.65%), Postives = 209/213 (98.12%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREGLMSPQTETK  VGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGLMSPQTETKTGVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV 120
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQYIAYVAYPLDLFEEGSV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVAGEENQYIAYVAYPLDLFEEGSV 120

Query: 121 TNMFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCT 180
           TNMFTSIVGNVFGFKALRALRLEDLRIPTAY+KTFQGPPHGIQVERDKLNKYGRPLLGCT
Sbjct: 121 TNMFTSIVGNVFGFKALRALRLEDLRIPTAYVKTFQGPPHGIQVERDKLNKYGRPLLGCT 180

Query: 181 IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV 214
           IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV
Sbjct: 181 IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV 213

[Close]
BLAST of CmoCh09G011830 vs. NCBI nr
Match: gi|910750193|gb|AKU47140.1| (ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Ananas comosus])

HSP 1 Score: 433.7 bits (1114), Expect = 1.9e-118
Identity = 209/213 (98.12%), Postives = 210/213 (98.59%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV 120
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQYIAYVAYPLDLFEEGSV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEENQYIAYVAYPLDLFEEGSV 120

Query: 121 TNMFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCT 180
           TNMFTSIVGNVFGFKALRALRLEDLRIPT+Y KTFQGPPHGIQVERDKLNKYGRPLLGCT
Sbjct: 121 TNMFTSIVGNVFGFKALRALRLEDLRIPTSYSKTFQGPPHGIQVERDKLNKYGRPLLGCT 180

Query: 181 IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV 214
           IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV
Sbjct: 181 IKPKLGLSAKNYGRAVYECLRGGLDFTKDDENV 213

The following BLAST results are available for this feature:
BLAST of CmoCh09G011830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RBL_LACSA4.9e-11999.51Ribulose bisphosphate carboxylase large chain OS=Lactuca sativa GN=rbcL PE=3 SV=... [more]
RBL_CUCSA3.2e-11899.51Ribulose bisphosphate carboxylase large chain OS=Cucumis sativus GN=rbcL PE=1 SV... [more]
RBL_CICIN5.4e-11899.03Ribulose bisphosphate carboxylase large chain OS=Cichorium intybus GN=rbcL PE=3 ... [more]
RBL_FLAPR9.3e-11898.06Ribulose bisphosphate carboxylase large chain OS=Flaveria pringlei GN=rbcL PE=3 ... [more]
RBL_SOYBN1.2e-11798.54Ribulose bisphosphate carboxylase large chain OS=Glycine max GN=rbcL PE=1 SV=3[more]
BLAST of CmoCh09G011830 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0B2NQK2_GLYSO1.2e-11998.12Ribulose bisphosphate carboxylase large chain OS=Glycine soja GN=glysoja_042737 ... [more]
A0A0C9S5Z3_9SPER4.5e-11997.18TSA: Wollemia nobilis Ref_Wollemi_Transcript_12312_3435 transcribed RNA sequence... [more]
A0A0S3SDB6_PHAAN5.8e-11998.12Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G209900 PE=... [more]
A0A0P0JRV7_SALBB7.6e-11997.65Ribulose bisphosphate carboxylase large chain OS=Salix babylonica GN=rbcL PE=3 S... [more]
H6T1M0_9POAL1.3e-11898.12Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) OS=Pota... [more]
BLAST of CmoCh09G011830 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00490.17.1e-11696.60ATCG00490.1 ribulose-bisphosphate carboxylases[more]
AT2G07732.16.4e-0896.00 Ribulose bisphosphate carboxylase large chain, catalytic domain[more]
ATMG00280.16.4e-0896.00ATMG00280.1 Ribulose bisphosphate carboxylase large chain, catalytic domain[more]
BLAST of CmoCh09G011830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|74027109|gb|AAZ94659.1|1.5e-12099.53ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Cucumis sativus][more]
gi|734309146|gb|KHM99324.1|1.7e-11998.12Ribulose bisphosphate carboxylase large chain [Glycine soja][more]
gi|965603635|dbj|BAT90812.1|8.4e-11998.12hypothetical protein VIGAN_06209900 [Vigna angularis var. angularis][more]
gi|948299730|ref|YP_009179175.1|1.1e-11897.65ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Sal... [more]
gi|910750193|gb|AKU47140.1|1.9e-11898.12ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Ana... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000685RuBisCO_lsu_C
IPR017443RuBisCO_lsu_fd_N
IPR020878RuBisCo_large_chain_AS
Vocabulary: Molecular Function
TermDefinition
GO:0000287magnesium ion binding
GO:0016984ribulose-bisphosphate carboxylase activity
Vocabulary: Biological Process
TermDefinition
GO:0015977carbon fixation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009853 photorespiration
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0015977 carbon fixation
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G011830.1CmoCh09G011830.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalGENE3DG3DSA:3.20.20.110coord: 156..213
score: 2.8
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalPFAMPF00016RuBisCO_largecoord: 161..213
score: 1.7
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalunknownSSF51649RuBisCo, C-terminal domaincoord: 155..213
score: 1.96
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalGENE3DG3DSA:3.30.70.150coord: 29..155
score: 1.3
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalPFAMPF02788RuBisCO_large_Ncoord: 31..151
score: 3.8
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalunknownSSF54966RuBisCO, large subunit, small (N-terminal) domaincoord: 16..156
score: 3.14
IPR020878Ribulose bisphosphate carboxylase, large chain, active sitePROSITEPS00157RUBISCO_LARGEcoord: 203..211
scor
NoneNo IPR availablePANTHERPTHR23321RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLARcoord: 32..213
score: 8.5E
NoneNo IPR availablePANTHERPTHR23321:SF31RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN-RELATEDcoord: 32..213
score: 8.5E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh09G011830Cucurbita moschata (Rifu)cmocmoB024
CmoCh09G011830Cucumber (Gy14) v1cgycmoB0899
CmoCh09G011830Cucurbita maxima (Rimu)cmacmoB027
CmoCh09G011830Cucurbita maxima (Rimu)cmacmoB441
CmoCh09G011830Wild cucumber (PI 183967)cmocpiB025
CmoCh09G011830Cucumber (Chinese Long) v2cmocuB025
CmoCh09G011830Melon (DHL92) v3.5.1cmomeB018
CmoCh09G011830Watermelon (Charleston Gray)cmowcgB028
CmoCh09G011830Watermelon (97103) v1cmowmB012
CmoCh09G011830Cucurbita pepo (Zucchini)cmocpeB012
CmoCh09G011830Cucurbita pepo (Zucchini)cmocpeB021
CmoCh09G011830Bottle gourd (USVL1VR-Ls)cmolsiB026
CmoCh09G011830Cucumber (Gy14) v2cgybcmoB687
CmoCh09G011830Melon (DHL92) v3.6.1cmomedB016
CmoCh09G011830Cucumber (Chinese Long) v3cmocucB0030
CmoCh09G011830Watermelon (97103) v2cmowmbB029
CmoCh09G011830Wax gourdcmowgoB0012