CmoCh09G011450 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G011450
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	Cmo_Chr09 : 6696712 .. 6698895 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGACTAATTCGAGGAATAGAAGAGTTGACTGATCGAATAGGAAGATTGGAGATTCAAAATCAAGCTCGACAGAGGATTCCACTACCTACACCCTCAACTGATACATATGAGGGCGACAATTCTGATCACCACGAGGATAATCCGCATGTGGTTGGCCATGGCTTGATGCGAGGGAGAGACCATGGAAGAAGGTATCATAATTTACAACAACAAGTTCCTTATGATGATAGAATTGATCGTAACGTGGGGAGCATCAAATTAAAACTTCCCAAGTTTTATGGAAAAAACGATCCAGAGGAGTAGCTTGAGTGGGAGAAAACGGTGGAGTCAGTGTTCAACTGTCATAATTTTAGTGATGAAAAGAAGGTATTGTTGTGCATTGCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATATCAAGTAGGAGAAGAAACCTTGAAGCACCAATTGATTCATGGTACGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCAACGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGATGCAAATCTGTGGAAGATTATTACAAGGAGATGGATACATTAATGGATCGACTTGATCTCGATGAGGACATGGAGGCTCTCATGGCATGGTTTCTTAATGGGTTAAACACAGAGATTGCAGACAAGACTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACAGTGCAATTAAGATCGAGAGGCAAATCCAACAAAGGTCTCAACGGTATTCTTCTAAAACTTTTCCCAATTCTACTTCTACATGGAAAAAGGATAGTAAAAACATTGATTATAAGCATAGAAATCAAGAGATTAATGAGAAGCCTCAAGCTAAATTTGAGAAAGGGGAGAGTTCTAGAACAGGGAAAGAAAAAGTAGAAAAGTCTAATGTTCGAAATAGAGATTTAAAGTGTTGGAGATGTCAAGGGGTAGGACATTATAATAGAGATTGCCCAAATGCAAGAATTATGACCATCAAGGAGGGGGAAATTGTTACAGATGACGAGGCATATGACGACATAAAGGAGGAAACTAATGAGAGTGAGGAGTTTAGTGAAGAGGACCCTATACATATATCTTTGGTTACTCGACGAGCTCTAAACACCCACATTAAGGAGGACAGCCTAGACCAATGGGAGAACTTATTTCAAACCTGGTGTCTTGTTCAATCTATACCTTGTAGTGTTGTCATTGATAGCGGTAGTTGCACCAATGTTGTGAGTTCCATTCTAGTCAAAAGACATAATTTAAAGACACAACTACATCCACGACCCTACAAGCTTCAATGGTTGAATGATCATGGGGAAGTACGGGTAACTCAATAAGCTCTTGTTTCTTTTACTATTAGAAATATGTTGATGATGTTTTATGTGATGTTGTATCCATGCATGTTGGAGATTTACTACTGGGGAGGCCTTGGCAATTTGATCGTCGGGTAATGTATGATGGGTATGCAAATCGATACTCTTTTATTCACAACGGTAGAAAAACTACTCTTATTCCATTGTCTCCAAAAGATGTATTTATTGATCATTGCAAACTTGAAAAGAAAAGGCAAGAGGTTGATGCAAAAGCAGAGATTGAAAAAGAATTAAGTGAACAAAAAGAGCTTGAGTGAAAAGCAAAAGAGTAACACTCCCTAGAGAAAAAAAAGAGAGAAAAGCCAAATTAGTAAGCTTGTATGTTAGCTCAAGTGAGGCTAGTAATCTTTTGCTCTCTAACCAGACTATTCTTGTACTTATGTGCAAGGGGTCTTGTTACTTTACTAACATGCTTACCTCTTCTTTGCCTAGTGATTTTGTTGTGCTTTTGCAAGAGTTTGAAGATTTATTTTTCGAGGAGATGCCTAGTAGTTTGCCACCACTTAGAGGGATTGAATACAAGACTGACTTAATTCCTGGCGCGCCCATTCCAAACCGACCAGCTTATAGGACTAATTCAAAGGAGGCTGAAGAGATACAAAGGCAAGTAAGTGAACTCCTTGCTAAAGGGTATGTACGTGAAAGTTTGAGTCCTTGTTCTGTTCCAGTTATTCTTGTACGTAAGAAAGATGGTTCTTGGCGTATATGTGTTGATTGTAGGGCTATAAACAAGATAACTATAAAGTATATGCATCTAATTCCCAGATTAGATGA

mRNA sequence

ATGGAAAGACTAATTCGAGGAATAGAAGAGTTGACTGATCGAATAGGAAGATTGGAGATTCAAAATCAAGCTCGACAGAGGATTCCACTACCTACACCCTCAACTGATACATATGAGGGCGACAATTCTGATCACCACGAGGATAATCCGCATGTGGTTGGCCATGGCTTGATGCGAGGGAGAGACCATGGAAGAAGGAGAAGAAACCTTGAAGCACCAATTGATTCATGGTACGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCAACGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGATGCAAATCTGTGGAAGATTATTACAAGGAGATGGATACATTAATGGATCGACTTGATCTCGATGAGGACATGGAGGCTCTCATGGCATGGTTTCTTAATGGGTTAAACACAGAGATTGCAGACAAGACTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACAGTGCAATTAAGATCGAGAGGCAAATCCAACAAAGGTCTCAACGGTATTCTTCTAAAACTTTTCCCAATTCTACTTCTACATGGAAAAAGGATAGTAAAAACATTGATTATAAGCATAGAAATCAAGAGATTAATGAGAAGCCTCAAGCTAAATTTGAGAAAGGGGAGAGTTCTAGAACAGGGAAAGAAAAAGTAGAAAAGTCTAATGTTCGAAATAGAGATTTAAAGTGTTGGAGATGTCAAGGGGTAGGACATTATAATAGAGATTGCCCAAATGCAAGAATTATGACCATCAAGGAGGGGGAAATTGTTACAGATGACGAGGCATATGACGACATAAAGGAGGAAACTAATGAGAGTGAGGAGTTTAGTGAAGAGGACCCTATACATATATCTTTGGTTACTCGACGAGCTCTAAACACCCACATTAAGGAGGACAGCCTAGACCAATGGGAGAACTTATTTCAAACCTGGTGTCTTGTTCAATCTATACCTTGTAGTGTTGTCATTGATAGCGGTAGTTGCACCAATGTTACTATTCTTGTACTTATGTGCAAGGGGTCTTGTTACTTTACTAACATGCTTACCTCTTCTTTGCCTAGTGATTTTGTTGTGCTTTTGCAAGAGTTTGAAGATTTATTTTTCGAGGAGATGCCTAGTAGTTTGCCACCACTTAGAGGGATTGAATACAAGACTGACTTAATTCCTGGCGCGCCCATTCCAAACCGACCAGCTTATAGGACTAATTCAAAGGAGGCTGAAGAGATACAAAGGCAAGTAAGTGAACTCCTTGCTAAAGGGTATGGCTATAAACAAGATAACTATAAAGTATATGCATCTAATTCCCAGATTAGATGA

Coding sequence (CDS)

ATGGAAAGACTAATTCGAGGAATAGAAGAGTTGACTGATCGAATAGGAAGATTGGAGATTCAAAATCAAGCTCGACAGAGGATTCCACTACCTACACCCTCAACTGATACATATGAGGGCGACAATTCTGATCACCACGAGGATAATCCGCATGTGGTTGGCCATGGCTTGATGCGAGGGAGAGACCATGGAAGAAGGAGAAGAAACCTTGAAGCACCAATTGATTCATGGTACGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCAACGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGATGCAAATCTGTGGAAGATTATTACAAGGAGATGGATACATTAATGGATCGACTTGATCTCGATGAGGACATGGAGGCTCTCATGGCATGGTTTCTTAATGGGTTAAACACAGAGATTGCAGACAAGACTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACAGTGCAATTAAGATCGAGAGGCAAATCCAACAAAGGTCTCAACGGTATTCTTCTAAAACTTTTCCCAATTCTACTTCTACATGGAAAAAGGATAGTAAAAACATTGATTATAAGCATAGAAATCAAGAGATTAATGAGAAGCCTCAAGCTAAATTTGAGAAAGGGGAGAGTTCTAGAACAGGGAAAGAAAAAGTAGAAAAGTCTAATGTTCGAAATAGAGATTTAAAGTGTTGGAGATGTCAAGGGGTAGGACATTATAATAGAGATTGCCCAAATGCAAGAATTATGACCATCAAGGAGGGGGAAATTGTTACAGATGACGAGGCATATGACGACATAAAGGAGGAAACTAATGAGAGTGAGGAGTTTAGTGAAGAGGACCCTATACATATATCTTTGGTTACTCGACGAGCTCTAAACACCCACATTAAGGAGGACAGCCTAGACCAATGGGAGAACTTATTTCAAACCTGGTGTCTTGTTCAATCTATACCTTGTAGTGTTGTCATTGATAGCGGTAGTTGCACCAATGTTACTATTCTTGTACTTATGTGCAAGGGGTCTTGTTACTTTACTAACATGCTTACCTCTTCTTTGCCTAGTGATTTTGTTGTGCTTTTGCAAGAGTTTGAAGATTTATTTTTCGAGGAGATGCCTAGTAGTTTGCCACCACTTAGAGGGATTGAATACAAGACTGACTTAATTCCTGGCGCGCCCATTCCAAACCGACCAGCTTATAGGACTAATTCAAAGGAGGCTGAAGAGATACAAAGGCAAGTAAGTGAACTCCTTGCTAAAGGGTATGGCTATAAACAAGATAACTATAAAGTATATGCATCTAATTCCCAGATTAGATGA

Homology

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BLAST of CmoCh09G011450 vs. TrEMBL
Match: A5AMK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016481 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.5e-64
Identity = 156/379 (41.16%), Postives = 231/379 (60.95%), Query Frame = 1


Query: 66  RRRNLEAPIDSWYEFKESMRKRFVPQYFQRDMAQKLQALKQGCKSVEDYYKEMDTLMDRL 125
           +RRN E PI++W E K +MR+RFVP ++ RD+ QKLQ+L QG +SV+DY+KEM+  M R 
Sbjct: 253 KRRNYERPIETWEEMKATMRRRFVPSHYYRDLYQKLQSLTQGYRSVDDYHKEMEIAMIRA 312

Query: 126 DLDEDMEALMAWFLNGLNTEIADKTDLQPYSNIEELLHSAIKIERQIQQRSQRYSSKTFP 185
           +++E+ EA MA FLNGLN +IA+  +LQ Y  +E+++H AIK+ERQ++++  R  S   P
Sbjct: 313 NVEENREATMARFLNGLNRDIANVVELQHYVELEDMVHMAIKVERQLKRKETR--SFQNP 372

Query: 186 NSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEKVEKSNVRNRDLKCWRCQG 245
            S+++W+ + +    K        K +    + E+    K K E S  RNRD+KC+RC G
Sbjct: 373 GSSASWRXNGR----KDEGVVFKSKTEPPKRRDEAPNVNKGKNE-SQTRNRDIKCFRCLG 432

Query: 246 VGHYNRDCPNARIM-TIKEGEIVTDDEAYDDIKEETNESEEFSEEDPIH-ISLVTRRALN 305
           VGH    CPN R M    +GE+ T+ E  DD      ++ + + E P+   SLV RRAL+
Sbjct: 433 VGHIASQCPNKRTMIAXVDGEVETESEEDDDQMPSLEDACDNNVEYPVEGESLVARRALS 492

Query: 306 THIKEDSLDQW-ENLFQTWCLVQSIPCSVVIDSGSC-TNVTILVLMCKGSCYFTNMLTSS 365
             +KED ++Q  EN+F T C + +     + D G    N  +LV    G  Y   +L   
Sbjct: 493 AQVKEDDMEQQRENIFHTRCHINN---KWLNDCGEVKVNKQVLVSFSIGR-YKDEVLCDI 552

Query: 366 LPSDFVVLL---------QEFEDLFFEEMPSSLPPLRGIEYKTDLIPGAPIPNRPAYRTN 425
           +P     +L         +E+ED+F  ++PS LPP+RGIE++ + +PGA IPNRPAYR+N
Sbjct: 553 VPMHAGHILLGRPWQFDRKEYEDVFPNDVPSGLPPIRGIEHQINFVPGATIPNRPAYRSN 612

Query: 426 SKEAEEIQRQVSELLAKGY 432
            +E +E+QRQV ELL KG+
Sbjct: 613 PEETKELQRQVEELLTKGH 620

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BLAST of CmoCh09G011450 vs. TrEMBL
Match: A5C3B5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020071 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.2e-55
Identity = 147/378 (38.89%), Postives = 215/378 (56.88%), Query Frame = 1


Query: 104 LKQGCKSVEDYYKEMDTLMDRLDLDEDMEALMAWFLNGLNTEIADKTDLQPYSNIEELLH 163
           +K   +SV+DY+KEM   M R +++ED EA M  F NGLN +IA+  +LQ Y  +E+++H
Sbjct: 171 IKTCYRSVDDYHKEMXIAMIRANVEEDREATMTRFPNGLNRDIANVVELQHYVELEDMVH 230

Query: 164 SAIKIERQIQQRSQRYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEK--GESS 223
            AIK+ER+++ +  R  S   P S+++WK + +      +++E+  K + K  K   E+ 
Sbjct: 231 MAIKVERRLKXKGTR--SFQNPXSSASWKPNVR------KDEEVVFKSKTKPXKMRDEAP 290

Query: 224 RTGKEKVEKSNVRNRDLKCWRCQGVGHYNRDCPNARIMTIK-EGEIVTDDEAYDDIKEET 283
              K K  KS   NRD+KC+RC GVGH    CPN R M  + +GE+ T+ E  DD     
Sbjct: 291 NVNKGK-NKSQTHNRDIKCFRCLGVGHIASQCPNKRTMIARVDGEVETESEEDDDQMPSL 350

Query: 284 NESEEFSEEDPIH-ISLVTRRALNTHIKEDSLDQW-ENLFQTWCLVQSIPCSVVIDSGSC 343
            ++ + + E P+   SLV RRAL+  +K+D ++Q  EN+F T C + +  CS++ID GSC
Sbjct: 351 EDACDDNVEYPVEGESLVARRALSAQVKKDDMEQQRENIFHTRCHINNKVCSMIIDGGSC 410

Query: 344 TN-----------------------------VTIL----------------VLMCKGSCY 403
           TN                             V +L                VL+ K  C+
Sbjct: 411 TNFLNDCGEVKVNKQVLVSFSIGRYKDEVLGVFMLRRVMSRMXFYTNXSIFVLLYKEVCF 470

Query: 404 FTNMLTSSLPSDFVVLLQEFEDLFFEEMPSSLPPLRGIEYKTDLIPGAPIPNRPAYRTNS 432
            TN L  SLPS  V LLQE+ED+F  ++PS LPP+RGIE++ D + GA IPNRPAYR+N 
Sbjct: 471 NTNELDESLPSVVVFLLQEYEDVFPNDVPSGLPPIRGIEHQIDFVXGATIPNRPAYRSNP 530

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BLAST of CmoCh09G011450 vs. TrEMBL
Match: A5AG41_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037350 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.2e-51
Identity = 140/376 (37.23%), Postives = 209/376 (55.59%), Query Frame = 1


Query: 66  RRRNLEAPIDSWYEFKESMRKRFVPQYFQRDMAQKLQALKQGCKSVEDYYKEMDTLMDRL 125
           RRRN E  I++W E K +MR+R                      +V+DY+KEM+  M R 
Sbjct: 121 RRRNYERLIETWEEMKATMRRR----------------------NVDDYHKEMEIAMIRA 180

Query: 126 DLDEDMEALMAWFLNGLNTEIADKTDLQPYSNIEELLHSAIKIERQIQQRSQRYSSKTFP 185
           +++ED E  MA FLNGLN +IA+  +LQ Y  +E ++H AIK+ERQ++++     S   P
Sbjct: 181 NVEEDRETTMARFLNGLNRDIANVVELQHYVELENMVHMAIKVERQLKRKGTL--SFQNP 240

Query: 186 NSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEKVEKSNVRNRDLKCWRCQG 245
            S+++W+ + +    K        K +    + E+    K K E S  RN D+KC+   G
Sbjct: 241 GSSASWRPNGR----KDEGVVFKSKTKPPKRRDEAPNVNKGKNE-SQTRNHDIKCFHYLG 300

Query: 246 VGHYNRDCPNARIMTIK-EGEIVTDDEAYDDIKEETNESEEFSEEDPIH-ISLVTRRALN 305
           VGH    CPN R M    +GE+ T+ E  DD      +S + + E P+   SLV RRAL+
Sbjct: 301 VGHIASQCPNKRTMIAHVDGEVETESEEDDDQMPSLEDSCDDNVEYPVEGESLVARRALS 360

Query: 306 THIKEDSLDQW-ENLFQTWCLVQSIPCSVVIDSGSCTNVTILVLMCKGSCYFTNMLTSSL 365
             +K+D ++Q  EN+F T C + +  CS++ID GSC NV    L+ K      N+ T   
Sbjct: 361 AQVKKDDMEQQRENIFHTRCHINNKVCSMIIDGGSCANVASTTLVEK-----LNLPTLKH 420

Query: 366 PSDFVVL-------LQEFEDLFFEEMPSSLPPLRGIEYKTDLIPGAPIPNRPAYRTNSKE 425
           P  + +        ++E++D+F   + S LP +R IE++ D +PGA IPNRPAYR+N +E
Sbjct: 421 PRPYKLQWLNDCGEVKEYKDVFPNNVLSGLPLIREIEHQIDFVPGATIPNRPAYRSNPEE 462

Query: 426 AEEIQRQVSELLAKGY 432
            +E+QRQV ELL KG+
Sbjct: 481 TKELQRQVEELLTKGH 462

[Close]

BLAST of CmoCh09G011450 vs. TrEMBL
Match: E7BQD7_PEA (Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 9.4e-47
Identity = 118/284 (41.55%), Postives = 167/284 (58.80%), Query Frame = 1


Query: 66  RRRNLEAPIDSWYEFKESMRKRFVPQYFQRDMAQKLQALKQGCKSVEDYYKEMDTLMDRL 125
           RRR  E PID+W E K  MR+RFVP Y+ R++  KL+ L QG KSVE+Y+KEM+ L  R 
Sbjct: 132 RRRYAERPIDTWEEMKRIMRRRFVPSYYHRELHNKLRRLTQGSKSVEEYFKEMEVLKIRA 191

Query: 126 DLDEDMEALMAWFLNGLNTEIADKTDLQPYSNIEELLHSAIKIERQIQQRSQRYSSKTFP 185
           +++ED EA MA FL+GLN +I+D  +L  Y  ++EL+H AIK+E+Q++++SQ   + T  
Sbjct: 192 NVEEDDEATMARFLHGLNHDISDIVELHHYVEMDELVHQAIKVEQQLKRKSQARRNSTTF 251

Query: 186 NSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEKVEKSNVRNRDLKCWRCQG 245
           NS S WK  +K      +    + K      KG++  +    V      N+ +KC++CQG
Sbjct: 252 NSQS-WKDKTK------KEGASSSKEATVENKGKTITSSSSSVS----TNKSVKCFKCQG 311

Query: 246 VGHYNRDCPNARIMTIKEGEIVTDDEAYDDIKEETNESEEFSEEDPIHISLVTRRALNTH 305
            GH    CP  R M ++E E + ++       E+ +  EEF EE P    L+ RR L + 
Sbjct: 312 QGHIASQCPTKRTMLMEENEGIVEE-------EDGDYDEEFEEEIPSGDLLMVRRMLGSQ 371

Query: 306 IKEDSLDQWENLFQTWCLVQSIPCSVVIDSGSCTNVTILVLMCK 350
           IKE+   Q ENLF T C VQ   CS++ID GSCTNV    L+ K
Sbjct: 372 IKEEDTGQRENLFHTRCFVQGKVCSLIIDGGSCTNVASTRLVSK 397

[Close]

BLAST of CmoCh09G011450 vs. TrEMBL
Match: E7BQD6_PEA (Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.1e-46
Identity = 117/276 (42.39%), Postives = 162/276 (58.70%), Query Frame = 1


Query: 66  RRRNLEAPIDSWYEFKESMRKRFVPQYFQRDMAQKLQALKQGCKSVEDYYKEMDTLMDRL 125
           RRR  E PID+W E K  MR+RFVP Y+ R++  KLQ L QG KSVE+Y+KEM+ L  R 
Sbjct: 132 RRRYAERPIDTWEEMKRIMRRRFVPSYYHRELHNKLQRLTQGSKSVEEYFKEMEVLKIRA 191

Query: 126 DLDEDMEALMAWFLNGLNTEIADKTDLQPYSNIEELLHSAIKIERQIQQRSQRYSSKTFP 185
           +++ED EA MA FL+GLN +I+D  +L  Y  ++EL+H AIK+E+Q++++SQ   + T  
Sbjct: 192 NVEEDDEATMARFLHGLNHDISDIVELHHYVEMDELVHQAIKVEQQLKRKSQARRNSTTF 251

Query: 186 NSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEKVEKSNVRNRDLKCWRCQG 245
           NS S WK  +K      +    + K      KG++  +    V      N+ +KC++CQG
Sbjct: 252 NSQS-WKDKTK------KEGASSSKEATVENKGKTITSSSSSVST----NKSVKCFKCQG 311

Query: 246 VGHYNRDCPNARIMTIKEGEIVTDDEAYDDIKEETNESEEFSEEDPIHISLVTRRALNTH 305
            GH    CP  R M ++E E + ++E  D  KE       F EE P    L+ RR L + 
Sbjct: 312 QGHIASQCPTKRTMLMEENEEIVEEEDGDYDKE-------FGEEIPSGDLLMVRRMLGSQ 371

Query: 306 IKEDSLDQWENLFQTWCLVQSIPCSVVIDSGSCTNV 342
           IKE+   Q ENLF   C VQ   CS++ID GSCTNV
Sbjct: 372 IKEEDTSQRENLFHIRCFVQGKVCSLIIDGGSCTNV 389

[Close]

BLAST of CmoCh09G011450 vs. NCBI nr
Match: gi|823218652|ref|XP_012442007.1| (PREDICTED: uncharacterized protein LOC105767023 [Gossypium raimondii])

HSP 1 Score: 266.2 bits (679), Expect = 1.1e-67
Identity = 161/375 (42.93%), Postives = 236/375 (62.93%), Query Frame = 1


Query: 66  RRRNLEAPIDSWYEFKESMRKRFVPQYFQRDMAQKLQALKQGCKSVEDYYKEMDTLMDRL 125
           RRRN E P+ +W E K  MRK+F+P Y+ R++ QKLQ+L QG +SVEDYYKEM+  M R 
Sbjct: 59  RRRNGERPVSTWAEMKAIMRKQFIPAYYHRELYQKLQSLTQGQRSVEDYYKEMEVAMIRA 118

Query: 126 DLDEDMEALMAWFLNGLNTEIADKTDLQPYSNIEELLHSAIKIERQIQQRSQRYSSKTFP 185
           D++ED EA MA FL GLN EIA+  +L  Y  + +++H AIK+E+Q++++    +S++FP
Sbjct: 119 DVEEDREATMARFLAGLNREIANIVELHHYVEVIDMVHMAIKVEKQLKRKG---TSRSFP 178

Query: 186 NSTS--TWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEKVEKSNVRNRDLKCWRC 245
           N++S   W + +   D   RN+E++     KF K   + + K K++    R+RD+KC++C
Sbjct: 179 NTSSLTRWGQGTNKRDMPSRNKEVS--GATKFNK-PIAESSKGKMDAQPNRSRDIKCFKC 238

Query: 246 QGVGHYNRDCPNARIMTIKEGEIVTDDEAYDDIKEETNESEEFSEEDPIHISLVTRRALN 305
            G GH    CPN   M I++ E    +EA + ++EE  E  E +E   I   LV +R+L 
Sbjct: 239 LGRGHIKSQCPNRNAMFIRDDE----NEAVEQLEEE--EDIEQAENGEI---LVVKRSLT 298

Query: 306 THIKEDSLDQWENLFQTWCLVQSIPCSVVIDSGSCTNVTILVLMCKGSCYFTNMLTSSLP 365
               E+   Q EN+F T C VQ   C V+ID GSCTNV   +++ K       + T+  P
Sbjct: 299 LQGVEND-QQRENIFHTRCQVQGNICCVIIDGGSCTNVASTLMVEK-----LGLATTKHP 358

Query: 366 SDFVVL-------LQEFEDLFFEEMPSSLPPLRGIEYKTDLIPGAPIPNRPAYRTNSKEA 425
             + +        L+EF+D+F EE+PS LPP+ GIE++ DL+PGA IPNRPAYR+N +E 
Sbjct: 359 HPYKLQWLNDGGELKEFQDVFPEEIPSGLPPISGIEHQIDLVPGAAIPNRPAYRSNPEET 412

Query: 426 EEIQRQVSELLAKGY 432
           +E+Q+QV+ELL KGY
Sbjct: 419 KELQKQVNELLEKGY 412

[Close]

BLAST of CmoCh09G011450 vs. NCBI nr
Match: gi|823137916|ref|XP_012468777.1| (PREDICTED: uncharacterized protein LOC105786844 [Gossypium raimondii])

HSP 1 Score: 260.8 bits (665), Expect = 4.5e-66
Identity = 158/376 (42.02%), Postives = 234/376 (62.23%), Query Frame = 1


Query: 66  RRRNLEAPIDSWYEFKESMRKRFVPQYFQRDMAQKLQALKQGCKSVEDYYKEMDTLMDRL 125
           RRRN E P+ +W E K  MRKRF+  Y+ R++ QKLQ+L QG +SVEDYYKEM+  M R 
Sbjct: 127 RRRNGERPVSTWAEMKAIMRKRFILAYYHRELYQKLQSLTQGQRSVEDYYKEMEVAMIRA 186

Query: 126 DLDEDMEALMAWFLNGLNTEIADKTDLQPYSNIEELLHSAIKIERQIQQRSQRYSSKTFP 185
           D++ED EA MA FL GLN EIA+  +L  Y  + +++H AIK+E+Q++++    +S++FP
Sbjct: 187 DVEEDREATMARFLAGLNREIANIVELHHYVEVIDMVHMAIKVEKQLKRKG---TSRSFP 246

Query: 186 NSTS--TWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEKVEKSNVRNRDLKCWRC 245
           N++S   W + +   D   RN+E++     KF K   + + K K++    R+RD+KC++C
Sbjct: 247 NTSSMTRWGQGTNKRDMPSRNKEVS--GATKFNK-PIAESSKGKMDAQPNRSRDIKCFKC 306

Query: 246 QGVGHYNRDCPNARIMTI-KEGEIVTDDEAYDDIKEETNESEEFSEEDPIHISLVTRRAL 305
            G GH    C N   M I  +G+I ++ E   +  E   E EE  + +   I LV +R+L
Sbjct: 307 LGRGHIASQCLNRNAMFIWDDGKIESEGEQEQEAVEPNKEEEEVEQAENGEI-LVVKRSL 366

Query: 306 NTHIKEDSLDQWENLFQTWCLVQSIPCSVVIDSGSCTNVTILVLMCKGSCYFTNMLTSSL 365
                E+   Q EN+F T C V    C V+ID GSCTNV   +++ K       ++T+  
Sbjct: 367 TLQGAEND-QQRENIFHTRCQVNGKICCVIIDVGSCTNVASTLMVEK-----LGLVTTKH 426

Query: 366 PSDFVVL-------LQEFEDLFFEEMPSSLPPLRGIEYKTDLIPGAPIPNRPAYRTNSKE 425
           P  + +        L+EF+D+F E++PS LPP+RGIE++ DL+PGA IPNRPAYR+N +E
Sbjct: 427 PHPYKLQWLNDGGELKEFQDVFPEQIPSGLPPIRGIEHQIDLVPGAAIPNRPAYRSNPEE 486

Query: 426 AEEIQRQVSELLAKGY 432
            +E+Q+QV+ELL KGY
Sbjct: 487 TKELQKQVNELLEKGY 489

[Close]

BLAST of CmoCh09G011450 vs. NCBI nr
Match: gi|147818189|emb|CAN73562.1| (hypothetical protein VITISV_016481 [Vitis vinifera])

HSP 1 Score: 252.7 bits (644), Expect = 1.2e-63
Identity = 156/379 (41.16%), Postives = 231/379 (60.95%), Query Frame = 1


Query: 66  RRRNLEAPIDSWYEFKESMRKRFVPQYFQRDMAQKLQALKQGCKSVEDYYKEMDTLMDRL 125
           +RRN E PI++W E K +MR+RFVP ++ RD+ QKLQ+L QG +SV+DY+KEM+  M R 
Sbjct: 253 KRRNYERPIETWEEMKATMRRRFVPSHYYRDLYQKLQSLTQGYRSVDDYHKEMEIAMIRA 312

Query: 126 DLDEDMEALMAWFLNGLNTEIADKTDLQPYSNIEELLHSAIKIERQIQQRSQRYSSKTFP 185
           +++E+ EA MA FLNGLN +IA+  +LQ Y  +E+++H AIK+ERQ++++  R  S   P
Sbjct: 313 NVEENREATMARFLNGLNRDIANVVELQHYVELEDMVHMAIKVERQLKRKETR--SFQNP 372

Query: 186 NSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEKVEKSNVRNRDLKCWRCQG 245
            S+++W+ + +    K        K +    + E+    K K E S  RNRD+KC+RC G
Sbjct: 373 GSSASWRXNGR----KDEGVVFKSKTEPPKRRDEAPNVNKGKNE-SQTRNRDIKCFRCLG 432

Query: 246 VGHYNRDCPNARIM-TIKEGEIVTDDEAYDDIKEETNESEEFSEEDPIH-ISLVTRRALN 305
           VGH    CPN R M    +GE+ T+ E  DD      ++ + + E P+   SLV RRAL+
Sbjct: 433 VGHIASQCPNKRTMIAXVDGEVETESEEDDDQMPSLEDACDNNVEYPVEGESLVARRALS 492

Query: 306 THIKEDSLDQW-ENLFQTWCLVQSIPCSVVIDSGSC-TNVTILVLMCKGSCYFTNMLTSS 365
             +KED ++Q  EN+F T C + +     + D G    N  +LV    G  Y   +L   
Sbjct: 493 AQVKEDDMEQQRENIFHTRCHINN---KWLNDCGEVKVNKQVLVSFSIGR-YKDEVLCDI 552

Query: 366 LPSDFVVLL---------QEFEDLFFEEMPSSLPPLRGIEYKTDLIPGAPIPNRPAYRTN 425
           +P     +L         +E+ED+F  ++PS LPP+RGIE++ + +PGA IPNRPAYR+N
Sbjct: 553 VPMHAGHILLGRPWQFDRKEYEDVFPNDVPSGLPPIRGIEHQINFVPGATIPNRPAYRSN 612

Query: 426 SKEAEEIQRQVSELLAKGY 432
            +E +E+QRQV ELL KG+
Sbjct: 613 PEETKELQRQVEELLTKGH 620

[Close]

BLAST of CmoCh09G011450 vs. NCBI nr
Match: gi|698551637|ref|XP_009769379.1| (PREDICTED: uncharacterized protein LOC104220246 [Nicotiana sylvestris])

HSP 1 Score: 240.4 bits (612), Expect = 6.3e-60
Identity = 148/381 (38.85%), Postives = 220/381 (57.74%), Query Frame = 1


Query: 71  EAPIDSWYEFKESMRKRFVPQYFQRDMAQKLQALKQGCKSVEDYYKEMDTLMDRLDLDED 130
           +AP+ +W E K  MRKRFVP +FQR++ Q+LQ LKQG  SV++Y+K MD  M + +  E+
Sbjct: 178 QAPVATWAEMKRVMRKRFVPSHFQRELQQRLQTLKQGSMSVDEYFKAMDMAMIQANCTEE 237

Query: 131 MEALMAWFLNGLNTEIADKTDLQPYSNIEELLHSAIKIERQIQQRSQRYSSKTFPNSTST 190
            EA MA FLNGLN EIAD  +LQ Y  I+EL+  ++KIE Q +++            TS+
Sbjct: 238 EEATMARFLNGLNKEIADVVELQQYVTIDELVDLSVKIENQNKRK-----------QTSS 297

Query: 191 WKKDSKNIDYK---HRNQEINEKPQAKFEKG--ESSRTGKEKVEKSNVRNRDLKCWRCQG 250
           WK  +  I  K   +   + + +PQ    KG  E+   GK    K    +  ++C +C+G
Sbjct: 298 WKGRTSTISKKPWPYHEMKSSSRPQEDKGKGKFENKEGGKTFNPKPFTPSSSIQCHKCKG 357

Query: 251 VGHYNRDCPNARIMTIKEGEIVTDDEAYDDIKEETNESEEFSEEDPIHISL-----VTRR 310
            GH   +CP+ R + ++E      D  Y+  K E  E  + S+ED + +       V RR
Sbjct: 358 RGHMMHECPSRRNIILRE------DGGYESEKGEGEEEGDVSDEDDVELPNEGMIGVVRR 417

Query: 311 ALNTHIKEDSLDQWENLFQTWCLVQSIPCSVVIDSGSCTNVTILVLMCKGSCYFTNMLTS 370
            +  ++  +S +Q EN+F T C ++   CS++IDSGSC NV         S YF   L  
Sbjct: 418 IMTINLASNSEEQRENIFHTRCGIKGKTCSMIIDSGSCANVV--------SSYFVEKLGL 477

Query: 371 SL---PSDFVVL-------LQEFEDLFFEEMPSSLPPLRGIEYKTDLIPGAPIPNRPAYR 430
           +    P+ + +        L++FED+F E++P+ LPPLRGIE++ D +PG+ IPNRPAYR
Sbjct: 478 ACMKHPTPYRLQWLNDSGELKDFEDVFPEDIPNGLPPLRGIEHQIDFVPGSQIPNRPAYR 533

Query: 431 TNSKEAEEIQRQVSELLAKGY 432
           +N +E +E+QRQV ELL KG+
Sbjct: 538 SNPEETKELQRQVEELLEKGF 533

[Close]

BLAST of CmoCh09G011450 vs. NCBI nr
Match: gi|1021525293|ref|XP_016206048.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107646376 [Arachis ipaensis])

HSP 1 Score: 236.9 bits (603), Expect = 6.9e-59
Identity = 158/414 (38.16%), Postives = 221/414 (53.38%), Query Frame = 1


Query: 66  RRRNLEAPIDSWYEFKESMRKRFVPQYFQRDMAQKLQALKQGCKSVEDYYKEMDTLMDRL 125
           RR+N + PI+SW   K  M+KRFVP Y+ R++ QKL  L QG KSVEDY+K+MD LM   
Sbjct: 230 RRQNDDHPIESWDLMKRLMKKRFVPSYYYREVHQKLHRLTQGSKSVEDYHKKMDMLMITA 289

Query: 126 DLDEDMEALMAWFLNGLNTEIADKTDLQPYSNIEELLHSAIKIERQIQQRSQRYSSKTFP 185
           D++E+ +  MA F+  LN  IAD  +L  Y  +E+L+  A+K+ERQ Q+R+ R  S   P
Sbjct: 290 DIEENTKVTMARFVGDLNRAIADVMELHHYVEMEDLVSMAMKVERQQQRRAPRELSHANP 349

Query: 186 NSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEKVEKSNVRNRDLKCWRCQG 245
                W+  S +   K +  E N    A  +KG S+ +       +  R+RD+KC++C G
Sbjct: 350 K----WESRSADTT-KTKGVESNALLDATKKKGNSNSSS------ATSRHRDIKCFKCHG 409

Query: 246 VGHYNRDCPNARIMTIKEGEIVTDDEAYDDIKEETNESEEFSEEDPIHI-----SLVTRR 305
           +GHY  DCPN R+M I+  +IV+D +  DD    +  S +   +  +       SL+ RR
Sbjct: 410 MGHYASDCPNRRLMIIRGDDIVSDSDHGDDSDHNSMPSLKDCSDGDVEYAVHGESLIVRR 469

Query: 306 ALNTHIKEDSLDQWENLFQTWCLVQSIPCSV----------------------------- 365
           ALN  +KEDSL+Q  NLF T CLV    CS+                             
Sbjct: 470 ALNLQVKEDSLEQRHNLFHTRCLVGEKVCSLIIDGGSWTNVANTLMVEKLSLTCVQHPKP 529

Query: 366 -----VIDSGSCTNVTILVLMCKGSCYFTNMLTSSLPSDFVVLL---------QEFEDLF 425
                + DSG       +++      Y    L   +P     LL         +EF D+F
Sbjct: 530 YTLQWLNDSGEIKVDKQVIIAFSVGKYVYQALCDVVPMQACHLLLGRPWQFDRREFADVF 589

Query: 426 FEEMPSSLPPLRGIEYKTDLIPGAPIPNRPAYRTNSKEAEEIQRQVSELLAKGY 432
             ++P  LPPLRGIE++ D IPGA IPNRPAYR+N +E +E+QRQV ELLAKG+
Sbjct: 590 PTDVPCGLPPLRGIEHQIDFIPGANIPNRPAYRSNPEETKELQRQVKELLAKGH 632

The following BLAST results are available for this feature:

BLAST of CmoCh09G011450 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh09G011450 vs. TrEMBL


Match Name	E-value	Identity	Description
A5AMK2_VITVI	8.5e-64	41.16	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016481 PE=4 SV=1	[more]
A5C3B5_VITVI	3.2e-55	38.89	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020071 PE=4 SV=1	[more]
A5AG41_VITVI	2.2e-51	37.23	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037350 PE=4 SV=1	[more]
E7BQD7_PEA	9.4e-47	41.55	Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1	[more]
E7BQD6_PEA	2.1e-46	42.39	Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1	[more]

BLAST of CmoCh09G011450 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh09G011450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|823218652\|ref\|XP_012442007.1\|	1.1e-67	42.93	PREDICTED: uncharacterized protein LOC105767023 [Gossypium raimondii]	[more]
gi\|823137916\|ref\|XP_012468777.1\|	4.5e-66	42.02	PREDICTED: uncharacterized protein LOC105786844 [Gossypium raimondii]	[more]
gi\|147818189\|emb\|CAN73562.1\|	1.2e-63	41.16	hypothetical protein VITISV_016481 [Vitis vinifera]	[more]
gi\|698551637\|ref\|XP_009769379.1\|	6.3e-60	38.85	PREDICTED: uncharacterized protein LOC104220246 [Nicotiana sylvestris]	[more]
gi\|1021525293\|ref\|XP_016206048.1\|	6.9e-59	38.16	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107646376 [Arachis ip...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC
IPR005162	Retrotrans_gag_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G011450.1	CmoCh09G011450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	GENE3D	G3DSA:4.10.60.10		coord: 235..255 score: 9.
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 239..255 score: 2.
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 239..255 score: 0.
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 239..255 score: 9
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 229..256 score: 6.2
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 68..144 score: 1.7
None	No IPR available	unknown	Coil	Coil	coord: 1..21 score: -coord: 409..429 scor
None	No IPR available	PANTHER	PTHR22847	WD40 REPEAT PROTEIN	coord: 74..175 score: 3.6
None	No IPR available	PANTHER	PTHR22847:SF490	SUBFAMILY NOT NAMED	coord: 74..175 score: 3.6
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 369..431 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G011450	Cucumber (Chinese Long) v3	cmocucB0034
CmoCh09G011450	Cucumber (Chinese Long) v3	cmocucB0039
CmoCh09G011450	Watermelon (97103) v2	cmowmbB036
CmoCh09G011450	Watermelon (97103) v2	cmowmbB039
CmoCh09G011450	Wax gourd	cmowgoB0025
CmoCh09G011450	Wax gourd	cmowgoB0033
CmoCh09G011450	Cucurbita maxima (Rimu)	cmacmoB436
CmoCh09G011450	Cucumber (Gy14) v1	cgycmoB0130
CmoCh09G011450	Cucumber (Gy14) v1	cgycmoB0670
CmoCh09G011450	Cucurbita maxima (Rimu)	cmacmoB027
CmoCh09G011450	Wild cucumber (PI 183967)	cmocpiB029
CmoCh09G011450	Wild cucumber (PI 183967)	cmocpiB035
CmoCh09G011450	Cucumber (Chinese Long) v2	cmocuB032
CmoCh09G011450	Melon (DHL92) v3.5.1	cmomeB008
CmoCh09G011450	Watermelon (Charleston Gray)	cmowcgB002
CmoCh09G011450	Watermelon (Charleston Gray)	cmowcgB004
CmoCh09G011450	Watermelon (97103) v1	cmowmB002
CmoCh09G011450	Watermelon (97103) v1	cmowmB005
CmoCh09G011450	Cucurbita pepo (Zucchini)	cmocpeB015
CmoCh09G011450	Cucurbita pepo (Zucchini)	cmocpeB021
CmoCh09G011450	Cucurbita pepo (Zucchini)	cmocpeB034
CmoCh09G011450	Bottle gourd (USVL1VR-Ls)	cmolsiB005
CmoCh09G011450	Bottle gourd (USVL1VR-Ls)	cmolsiB007
CmoCh09G011450	Cucumber (Gy14) v2	cgybcmoB865
CmoCh09G011450	Cucumber (Gy14) v2	cgybcmoB869
CmoCh09G011450	Melon (DHL92) v3.6.1	cmomedB004
CmoCh09G011450	Melon (DHL92) v3.6.1	cmomedB008