CmoCh09G010630 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh09G010630
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCysteine proteinase inhibitor
LocationCmo_Chr09 : 5776333 .. 5776677 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCATACGTCAAAGTTGTTCTCGGGCAAAATGAAGCCTCGATTCAAGGTCCGAAAAATCTCGAATATGGTCGATTGGAACCGATTGAGAAAATCACCCCATATGTGGAAGAGATAGGAAGGTTTGCAGTAATGGAGCACAATCAGCAAAGTGGGGAACATTAGAAATTCATTTGTGTGATAAGGGGATGGAGCCAAATTGTAGCTGGAACAAATTATCGGCTTATTATTGAAGCCAGAAACCACGTTGGTTTGGCTTGGAATTATGAGGCTATGGTATATGATAAGCCATGGGAGAAGACATGGAAGCTCATAGAGTTTGTACCTTTACTCATGAACTGA

mRNA sequence

ATGAGTTCATACGTCAAAGTTGTTCTCGGGCAAAATGAAGCCTCGATTCAAGGTCCGAAAAATCTCGAATATGGTCGATTGGAACCGATTGAGAAAATCACCCCATATGTGGAAGAGATAGGAAGGGGATGGAGCCAAATTGTAGCTGGAACAAATTATCGGCTTATTATTGAAGCCAGAAACCACGTTGGTTTGGCTTGGAATTATGAGGCTATGGTATATGATAAGCCATGGGAGAAGACATGGAAGCTCATAGAGTTTGTACCTTTACTCATGAACTGA

Coding sequence (CDS)

ATGAGTTCATACGTCAAAGTTGTTCTCGGGCAAAATGAAGCCTCGATTCAAGGTCCGAAAAATCTCGAATATGGTCGATTGGAACCGATTGAGAAAATCACCCCATATGTGGAAGAGATAGGAAGGGGATGGAGCCAAATTGTAGCTGGAACAAATTATCGGCTTATTATTGAAGCCAGAAACCACGTTGGTTTGGCTTGGAATTATGAGGCTATGGTATATGATAAGCCATGGGAGAAGACATGGAAGCTCATAGAGTTTGTACCTTTACTCATGAACTGA
Homology
[Close]
BLAST of CmoCh09G010630 vs. Swiss-Prot
Match: CYT1_ACTDE (Cysteine proteinase inhibitor 1 OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-06
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 1 

Query: 38  EEIGRGWSQIVAGTNYRLIIEARNHVGLAWNYEAMVYDKPWEKTWKLIEF 88
           + + RG++Q+VAGTNYRL+I A++   +  NYEA+V+DKPW     L  F
Sbjct: 65  QSVVRGYTQVVAGTNYRLVIAAKDG-AVVGNYEAVVWDKPWMHFRNLTSF 113

[Close]
BLAST of CmoCh09G010630 vs. Swiss-Prot
Match: CYT5_ARATH (Cysteine proteinase inhibitor 5 OS=Arabidopsis thaliana GN=CYS5 PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 3.1e-06
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 1 

Query: 38  EEIGRGWSQIVAGTNYRLIIEARNHVGLAWNYEAMVYDKPWEKTWKLIEFVP 90
           E +  G +Q+V+GTNYRL + A +  G++ NY A+V+DKPW K   L  F P
Sbjct: 64  ETVVSGETQVVSGTNYRLKVAANDGDGVSKNYLAIVWDKPWMKFRNLTSFEP 115

[Close]
BLAST of CmoCh09G010630 vs. TAIR10
Match: AT5G47550.1 (AT5G47550.1 Cystatin/monellin superfamily protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.8e-07
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 1 

Query: 38  EEIGRGWSQIVAGTNYRLIIEARNHVGLAWNYEAMVYDKPWEKTWKLIEFVP 90
           E +  G +Q+V+GTNYRL + A +  G++ NY A+V+DKPW K   L  F P
Sbjct: 64  ETVVSGETQVVSGTNYRLKVAANDGDGVSKNYLAIVWDKPWMKFRNLTSFEP 115

[Close]
BLAST of CmoCh09G010630 vs. NCBI nr
Match: gi|695018835|ref|XP_009396392.1| (PREDICTED: cysteine proteinase inhibitor 1 {ECO:0000303|PubMed:14697268}-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 58.5 bits (140), Expect = 7.0e-06
Identity = 26/63 (41.27%), Postives = 42/63 (66.67%), Query Frame = 1 

Query: 30  IEKITPYVEEIGRGWSQIVAGTNYRLIIEARNHVGLAWNYEAMVYDKPWEKTWKLIEFVP 89
           +EK    + ++  G +Q+VAGTNYRL++E R+  G +  YEA+V++KPWE   +L  F  
Sbjct: 60  LEKTNLTLRKVEGGETQVVAGTNYRLVLEVRDGSGASARYEAVVWEKPWESFKQLASFHK 119

Query: 90  LLM 93
           L++
Sbjct: 120 LVI 122

The following BLAST results are available for this feature:
BLAST of CmoCh09G010630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CYT1_ACTDE1.8e-0648.00Cysteine proteinase inhibitor 1 OS=Actinidia deliciosa PE=1 SV=1[more]
CYT5_ARATH3.1e-0646.15Cysteine proteinase inhibitor 5 OS=Arabidopsis thaliana GN=CYS5 PE=2 SV=2[more]
BLAST of CmoCh09G010630 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh09G010630 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G47550.11.8e-0746.15 Cystatin/monellin superfamily protein[more]
BLAST of CmoCh09G010630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|695018835|ref|XP_009396392.1|7.0e-0641.27PREDICTED: cysteine proteinase inhibitor 1 {ECO:0000303|PubMed:14697268}-like [M... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018073Prot_inh_cystat_CS
IPR020381Proteinase inhibitor I25, cystatin, conserved region
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G010630.1CmoCh09G010630.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018073Proteinase inhibitor I25, cystatin, conserved sitePROSITEPS00287CYSTATINcoord: 45..58
scor
IPR020381Proteinase inhibitor I25, cystatin, conserved regionPRODOMPD001231coord: 38..87
score: 3.
IPR020381Proteinase inhibitor I25, cystatin, conserved regionPFAMPF16845SQAPIcoord: 38..88
score: 1.1
NoneNo IPR availableGENE3DG3DSA:3.10.450.10coord: 38..89
score: 3.
NoneNo IPR availableunknownSSF54403Cystatin/monellincoord: 23..90
score: 1.02

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh09G010630Wax gourdcmowgoB0013
CmoCh09G010630Cucurbita maxima (Rimu)cmacmoB436
CmoCh09G010630Cucurbita moschata (Rifu)cmocmoB009
CmoCh09G010630Cucurbita moschata (Rifu)cmocmoB029
CmoCh09G010630Cucurbita moschata (Rifu)cmocmoB018
CmoCh09G010630Cucurbita maxima (Rimu)cmacmoB027
CmoCh09G010630Cucurbita maxima (Rimu)cmacmoB283
CmoCh09G010630Cucurbita maxima (Rimu)cmacmoB675
CmoCh09G010630Wild cucumber (PI 183967)cmocpiB027
CmoCh09G010630Cucumber (Chinese Long) v2cmocuB026
CmoCh09G010630Melon (DHL92) v3.5.1cmomeB020
CmoCh09G010630Watermelon (Charleston Gray)cmowcgB026
CmoCh09G010630Watermelon (97103) v1cmowmB009
CmoCh09G010630Cucurbita pepo (Zucchini)cmocpeB009
CmoCh09G010630Cucurbita pepo (Zucchini)cmocpeB014
CmoCh09G010630Cucurbita pepo (Zucchini)cmocpeB021
CmoCh09G010630Cucurbita pepo (Zucchini)cmocpeB034
CmoCh09G010630Melon (DHL92) v3.6.1cmomedB019
CmoCh09G010630Silver-seed gourdcarcmoB0091
CmoCh09G010630Silver-seed gourdcarcmoB1116
CmoCh09G010630Silver-seed gourdcarcmoB1383
CmoCh09G010630Watermelon (97103) v2cmowmbB026