CmoCh09G007700 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh09G007700
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionProteasome subunit beta type-3-A
LocationCmo_Chr09 : 3905729 .. 3908992 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCCGCCCTCCATTCTTCTTCCATCTGCTGTTCTTCATTTCGCGGTGCTCTTTAAGCATTCTAATCGATGTAATTGTTTCATTTTAAATTTCTTTCTTTCTGCGTATGTTCTTCGAAATCGATTATCCGATCAAGCTTCTTCGATCGCGCTGGCGTGCAAATCTCATCTGTGAGTGAAAAATACTGATGATTGATACTCCTTTCTACGATCGTCTCTTCTAGTTATGATTGATATTGTTTCCATTAAGGTCTTGGTTGTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTTCCATTAAGGTCTTGGTTTTTTTTTTTTTTTTTTTTGTCATCTTATTTCGCAGGAGTGTTTTGTTTTTGTTATGATTCATTAGTTTTTAGTGAGTGCTGAATCTATACGACGTTATAGGTAATGTAGCCAGCTCATTGGCCTCTGGTTTTTCTCGGCCATTGGCGAGCATTTGGATCCTCACTTGATTTTCTCTCTGGAAGGACCTGCAGGTTGGTGCATTTTTTTCTGTTTCTTTTGATTTTCACATCATGTGGCCTCTAACCGTAAACTTAATCATCTACCTGATTTTGTCACGTTCTTTGCTTTTCTTTATTGAATATTGTTACCTGATTTTGTCACTGCTCGCACATGTTCCCATTTCAGTTTGTGGATCAACATGGGATTTCATAGAGAATTTCTGCGTTGCCGATTTGCTAAAGATGGGCATGATCTTGATTCTTTCATACTTTGGTGAGTGAAACAATTATGTTTTTGTGTATGTCAGTCCCTTGGTATTTGTAATATGCTGGAATTTCTCTGTTTTCCATGGTTGGGAGAAAACAGCCTTACAGCTTAAAATCTTGCATATACAAGCACTCTTAGTTTACATCTGCATAATATTTTATTACAACCAAAGATATAAAACCAAAGCTATGGGGTTTATCGACTAATCCTTGATGTTGATATCGAACCCTTCGATTTCTGGATATATCGACGGATATTTAATCATTGATTACAACTATTGATGTTCTATTAACTTCCTAATGTACCTGTGGTTGTAAATTGTCATCAGTTTTTATTTAATTTAGTTATTAACTCTCATCAATTTATATCGAAATTTGATAGAGCTTTGTGTTTCACATTACATTTCTTGAGTGACATTTTGGTGAGAGTCTTTGTAGTGTAAGAGTGAGGTATTCGCTTGTAACACCTTGATTATTAGTGATTGGTTGCTACCCGTGGATGTAGGAGAATTTTTTCTATCCAAACCACGTAAATATTTTGGTATCTCTATGTATAATTCCGTGCATTGTGGTTGTGAGTACATTCGTTCTGCTTTCGCTACAACAATCGGTATCATAGTTTCGTGGTTGTAGCATTTGGCGCACAACACCAGACCCGCTTTTTTTGTAGAACATTTCTAGTTCAATAGTTGAAGCTAATTTGATATGGTATGGAAGCATGCAATTGTTTCTTCTACGTTTTGAAATGTATAGTTCATTTCTCTCAACATTTATCTGTCAAATTAAAGTTGCTAGCATCAATAACTTACTGGTATAAAGATAATGGCAATTAAGTTCATTTGTGAGTTGTAACGAAGAATAGGTTCGTACATCTCCTATGCATGTATTGCCATTTATTTGGTATCTCTCATTTATTTGGCTCATAACCCTTTTGGTTATCTTCCATTGTGATATATGAATTATCTTGATTCATGTATAACATTAATATTACTATGCCCGTATAAAGGTTTGTCTAGCATTGTTTTGAAGTGTGGAGTTATTGTCATTTTGTATTTGCTTAGAGGCAATTAGGAGGAACTTTATAAGAGAGACTTTGTAGTGTGAGAATGACAGAGATACACTTGTTAACATTTTGGTTACCGTGATTAGCTACCACCCGTGGATGTAAGAGAATTTCTTCTGTCCGAACTACGTAAATCTTTGTCTCTTTGTTTAATTTCTGTTTGTGGGTGTGTGAGTGCAATCGATTTTGCTTCACTTCTGCTCCATCAATAATGATAATGGCAACTAAGTTCATATGGTATGGGAAGATGCAGCTATTTTCCGTGTTATGGTATGTGGAAACATCTAGTTATCAGATCGAAGTTGGTTATGACTTACTGATGTAATTGTAATGGGATTTGGGAATACAATCTACTGTTTGTCCCCTAATAATGCCTTTTACTTCTTTACCTGGTATGACTCTAAATCATAGGCTCACAAGATCAAAAGAAACTTCTTCGGAAAGGGATCCAAATCCAGTTTAGATGTGTTTAGTTACAAATGATGGCGAGAATTTATGTGCATTTTTGTTTGTTGATTATTACATAGAACATTAGTTCAGTGCTTGAATCTGCTCTTTCTTTTGGGGATTGTATGCAGGTATTTTACTCCTATGTTTATTACATAAAATTGGCGTCTTCGGCTGCATCGGTCGGGGTCGGGAGGGTTCTGCAGAACGATATGGACTTGTTTAGCTTGTCATTGTCAAAAGAACAAGAAGGCAGGCACTTTAGAAGAAAGGACCTGGAAGAAAAGTTTGAAAGTGAAGAAGGAAAACATCGGCATGGGGTCAACAAGCGATTCGAGCAATTTCCCCAAACGTGTTGAGTCGAGAACTAGCAGACGGGTGTCTCGTAGATAGATGAGGAACCACAGAGGTTTTGAAGTGAGAAAGTCATCGAGGTCGAAAAGTCATGGAATTCGAGTTAAGGAAGAGTAGAGTGTTGGTCTATGGTAAGCACAGAAGAAAATCTGTTGAGGTTGGGACTCATTTGAATGAGATTCTCCACAATAGTATGATATTGTCCACTTTGAGCGTAAGCTCTTAAGCTCTTATGGCTTTGCTTTGGGCTTCCCCAAAAAGTCTTATACCAACGGGGTTAGTATTCCTTACTTATAAACTCATGATTATTCCCTAAATTAGCCGATGTGCGACTTTCGTCCCACATTGAAATGTATGGATCATCCAAATTTGTGCATAGAGAAAGAGAATATGGAAGAGGAAGGCAAAGACGGTAGCAGCTGGCTGGGATTTGAAGAGTATTTAACAAAGGTA

mRNA sequence

CCTCCGCCCTCCATTCTTCTTCCATCTGCTGTTCTTCATTTCGCGGTGCTCTTTAAGCATTCTAATCGATGTAATTGTTTCATTTTAAATTTCTTTCTTTCTGCGTATGTTCTTCGAAATCGATTATCCGATCAAGCTTCTTCGATCGCGCTGGCGTGCAAATCTCATCTGTAATGTAGCCAGCTCATTGGCCTCTGGACCTGCAGTTTGTGGATCAACATGGGATTTCATAGAGAATTTCTGCGTTGCCGATTTGCTAAAGATGGGCATGATCTTGATTCTTTCATACTTTGGTATTTTACTCCTATGTTTATTACATAAAATTGGCGTCTTCGGCTGCATCGGTCGGGGTCGGGAGGGTTCTGCAGAACGATATGGACTTGTTTAGCTTGTCATTGTCAAAAGAACAAGAAGGCAGGCACTTTAGAAGAAAGGACCTGGAAGAAAAGTTTGAAAGTGAAGAAGGAAAACATCGGCATGGGGTCAACAAGCGATTCGAGCAATTTCCCCAAACGTGTTGAGTCGAGAACTAGCAGACGGGTGTCTCGTAGATAGATGAGGAACCACAGAGGTTTTGAAGTGAGAAAGTCATCGAGGTCGAAAAGTCATGGAATTCGAGTTAAGGAAGAGTAGAGTGTTGGTCTATGGTAAGCACAGAAGAAAATCTGTTGAGGTTGGGACTCATTTGAATGAGATTCTCCACAATAGTATGATATTGTCCACTTTGAGCGTAAGCTCTTAAGCTCTTATGGCTTTGCTTTGGGCTTCCCCAAAAAGTCTTATACCAACGGGAGAAAGAGAATATGGAAGAGGAAGGCAAAGACGGTAGCAGCTGGCTGGGATTTGAAGAGTATTTAACAAAGGTA

Coding sequence (CDS)

ATGTTCTTCGAAATCGATTATCCGATCAAGCTTCTTCGATCGCGCTGGCGTGCAAATCTCATCTGTAATGTAGCCAGCTCATTGGCCTCTGGACCTGCAGTTTGTGGATCAACATGGGATTTCATAGAGAATTTCTGCGTTGCCGATTTGCTAAAGATGGGCATGATCTTGATTCTTTCATACTTTGGTATTTTACTCCTATGTTTATTACATAAAATTGGCGTCTTCGGCTGCATCGGTCGGGGTCGGGAGGGTTCTGCAGAACGATATGGACTTGTTTAG
Homology
[Close]
BLAST of CmoCh09G007700 vs. TrEMBL
Match: A0A0A0L1V0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G361810 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.1e-13
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 1 

Query: 33 AVCGSTWDFI---ENFCVADLLKMGMILILSYFGILLLCLLHKIGVFGCIGRG 83
          +VCGSTWDFI   ENFCVA+LLKMGM+ ILSYF +LLL LLHKIG+F CIGRG
Sbjct: 34 SVCGSTWDFICYIENFCVANLLKMGMVFILSYFVLLLLYLLHKIGIFRCIGRG 86

[Close]
BLAST of CmoCh09G007700 vs. TrEMBL
Match: W9QYY7_9ROSA (Proteasome subunit beta type-3-A OS=Morus notabilis GN=L484_013374 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.8e-08
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 1 

Query: 28  LASGPAVCGSTWDFI---ENFCVADLLKMGMILILSYFGILLLCLLHKIGVFGCI 80
           L  G +VCGSTWDFI   ENFCV+ LLKM M+L+L Y  +L L LLHK+G+  C+
Sbjct: 229 LREGYSVCGSTWDFICYIENFCVSHLLKMAMVLVLLYIVLLFLYLLHKLGICECV 283

[Close]
BLAST of CmoCh09G007700 vs. TrEMBL
Match: A0A061FPA2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_035162 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-07
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1 

Query: 33 AVCGSTWDF---IENFCVADLLKMGMILILSYFGILLLCLLHKIGVFGCIG 81
          +VCGSTWDF   IENFCVA+LLK+ M+L+LSY  +L   LL+K+G+  CIG
Sbjct: 34 SVCGSTWDFICYIENFCVANLLKLIMVLVLSYIVLLFFYLLYKVGICQCIG 84

[Close]
BLAST of CmoCh09G007700 vs. TrEMBL
Match: B9S2X0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0563330 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.4e-07
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 1 

Query: 33 AVCGSTWDF---IENFCVADLLKMGMILILSYFGILLLCLLHKIGVFGCIG 81
          +VCGSTWDF   IENFCVA+LLK+ M+L L Y  +LL+ LL+K+ +F C+G
Sbjct: 34 SVCGSTWDFVCYIENFCVANLLKLAMVLALLYIVLLLIYLLYKLRIFECVG 84

[Close]
BLAST of CmoCh09G007700 vs. TrEMBL
Match: A0A0D2S7R6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G247900 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.8e-07
Identity = 29/53 (54.72%), Postives = 41/53 (77.36%), Query Frame = 1 

Query: 33 AVCGSTWD---FIENFCVADLLKMGMILILSYFGILLLCLLHKIGVFGCIGRG 83
          ++CGSTWD   +IENFCVA++LK+ M+L+LSY  +L L LL+K+G+  CI  G
Sbjct: 34 SICGSTWDLICYIENFCVANILKLIMVLVLSYIVLLYLYLLYKVGICQCIAHG 86

[Close]
BLAST of CmoCh09G007700 vs. TAIR10
Match: AT1G21722.1 (AT1G21722.1 unknown protein)

HSP 1 Score: 54.3 bits (129), Expect = 4.7e-08
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 

Query: 33 AVCGSTWDFI---ENFCVADLLKMGMILILSYFGILLLCLLHKIGVFGCIGRG 83
          +VC S WDFI   ENFCVA+L K  +ILILSYF +  + +L+K+G + CI  G
Sbjct: 34 SVCPSPWDFICYVENFCVANLAKTALILILSYFFLFFIYMLYKVGFWHCIIHG 86

[Close]
BLAST of CmoCh09G007700 vs. NCBI nr
Match: gi|659086938|ref|XP_008444189.1| (PREDICTED: protein HAPLESS 2 isoform X1 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-13
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 33 AVCGSTWDFI---ENFCVADLLKMGMILILSYFGILLLCLLHKIGVFGCIGRG 83
          +VCGSTWDFI   ENFCVA+L+KMGM+ ILSYF +LLL LLHKIG+FGCIGRG
Sbjct: 34 SVCGSTWDFICYIENFCVANLVKMGMVFILSYFVLLLLYLLHKIGIFGCIGRG 86

[Close]
BLAST of CmoCh09G007700 vs. NCBI nr
Match: gi|449449908|ref|XP_004142706.1| (PREDICTED: protein HAPLESS 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 5.9e-13
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 1 

Query: 33 AVCGSTWDFI---ENFCVADLLKMGMILILSYFGILLLCLLHKIGVFGCIGRG 83
          +VCGSTWDFI   ENFCVA+LLKMGM+ ILSYF +LLL LLHKIG+F CIGRG
Sbjct: 34 SVCGSTWDFICYIENFCVANLLKMGMVFILSYFVLLLLYLLHKIGIFRCIGRG 86

[Close]
BLAST of CmoCh09G007700 vs. NCBI nr
Match: gi|1012100207|ref|XP_015957159.1| (PREDICTED: uncharacterized protein LOC107481394 [Arachis duranensis])

HSP 1 Score: 69.3 bits (168), Expect = 4.0e-09
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 1 

Query: 33 AVCGSTWDF---IENFCVADLLKMGMILILSYFGILLLCLLHKIGVFGCIGRG 83
          +VCG TWDF   IENFCVA+LL++ M+ IL Y  +L   LLHK+G+FGCIGRG
Sbjct: 34 SVCGPTWDFLCYIENFCVANLLRLAMVFILLYAVLLFFYLLHKLGIFGCIGRG 86

[Close]
BLAST of CmoCh09G007700 vs. NCBI nr
Match: gi|1021547433|ref|XP_016165208.1| (PREDICTED: uncharacterized protein LOC107607821 [Arachis ipaensis])

HSP 1 Score: 69.3 bits (168), Expect = 4.0e-09
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 1 

Query: 33 AVCGSTWDF---IENFCVADLLKMGMILILSYFGILLLCLLHKIGVFGCIGRG 83
          +VCG TWDF   IENFCVA+LL++ M+ IL Y  +L   LLHK+G+FGCIGRG
Sbjct: 34 SVCGPTWDFLCYIENFCVANLLRLAMVFILLYAVLLFFYLLHKLGIFGCIGRG 86

[Close]
BLAST of CmoCh09G007700 vs. NCBI nr
Match: gi|1021477808|ref|XP_016177940.1| (PREDICTED: uncharacterized protein LOC107620263 [Arachis ipaensis])

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-08
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 1 

Query: 33 AVCGSTWDF---IENFCVADLLKMGMILILSYFGILLLCLLHKIGVFGCIGRG 83
          +VCG TWDF   IEN CVA+LL++ M+ IL Y  +L   LLHK+GVFGCIGRG
Sbjct: 34 SVCGPTWDFLCYIENVCVANLLRLAMVFILLYAVLLFFYLLHKLGVFGCIGRG 86

The following BLAST results are available for this feature:
BLAST of CmoCh09G007700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh09G007700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1V0_CUCSA4.1e-1377.36Uncharacterized protein OS=Cucumis sativus GN=Csa_4G361810 PE=4 SV=1[more]
W9QYY7_9ROSA6.8e-0858.18Proteasome subunit beta type-3-A OS=Morus notabilis GN=L484_013374 PE=3 SV=1[more]
A0A061FPA2_THECC2.6e-0760.78Uncharacterized protein OS=Theobroma cacao GN=TCM_035162 PE=4 SV=1[more]
B9S2X0_RICCO4.4e-0758.82Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0563330 PE=4 SV=1[more]
A0A0D2S7R6_GOSRA5.8e-0754.72Uncharacterized protein OS=Gossypium raimondii GN=B456_009G247900 PE=4 SV=1[more]
BLAST of CmoCh09G007700 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G21722.14.7e-0852.83 unknown protein[more]
BLAST of CmoCh09G007700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659086938|ref|XP_008444189.1|1.6e-1377.36PREDICTED: protein HAPLESS 2 isoform X1 [Cucumis melo][more]
gi|449449908|ref|XP_004142706.1|5.9e-1377.36PREDICTED: protein HAPLESS 2 isoform X1 [Cucumis sativus][more]
gi|1012100207|ref|XP_015957159.1|4.0e-0962.26PREDICTED: uncharacterized protein LOC107481394 [Arachis duranensis][more]
gi|1021547433|ref|XP_016165208.1|4.0e-0962.26PREDICTED: uncharacterized protein LOC107607821 [Arachis ipaensis][more]
gi|1021477808|ref|XP_016177940.1|2.0e-0862.26PREDICTED: uncharacterized protein LOC107620263 [Arachis ipaensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G007700.1CmoCh09G007700.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35278FAMILY NOT NAMEDcoord: 34..82
score: 1.5
NoneNo IPR availablePANTHERPTHR35278:SF1F8K7.16coord: 34..82
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh09G007700Cucsa.125320Cucumber (Gy14) v1cgycmoB0327
CmoCh09G007700CmaCh09G007780Cucurbita maxima (Rimu)cmacmoB027
CmoCh09G007700Csa4G361810Cucumber (Chinese Long) v2cmocuB013
CmoCh09G007700CSPI04G17660Wild cucumber (PI 183967)cmocpiB013
CmoCh09G007700Cp4.1LG02g03020Cucurbita pepo (Zucchini)cmocpeB029
CmoCh09G007700Cp4.1LG06g05990Cucurbita pepo (Zucchini)cmocpeB034
CmoCh09G007700MELO3C010502.2Melon (DHL92) v3.6.1cmomedB025
CmoCh09G007700CsaV3_4G028090Cucumber (Chinese Long) v3cmocucB0017
CmoCh09G007700Cla97C11G221910Watermelon (97103) v2cmowmbB009
CmoCh09G007700CsGy4G016810Cucumber (Gy14) v2cgybcmoB435
CmoCh09G007700Carg00326Silver-seed gourdcarcmoB0906
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh09G007700CmoCh01G014290Cucurbita moschata (Rifu)cmocmoB013
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh09G007700Silver-seed gourdcarcmoB1117
CmoCh09G007700Silver-seed gourdcarcmoB1399
CmoCh09G007700Watermelon (97103) v2cmowmbB032
CmoCh09G007700Wax gourdcmowgoB0031
CmoCh09G007700Cucurbita moschata (Rifu)cmocmoB008
CmoCh09G007700Cucurbita moschata (Rifu)cmocmoB030
CmoCh09G007700Cucurbita maxima (Rimu)cmacmoB282
CmoCh09G007700Cucurbita maxima (Rimu)cmacmoB432
CmoCh09G007700Cucurbita maxima (Rimu)cmacmoB676
CmoCh09G007700Melon (DHL92) v3.5.1cmomeB017
CmoCh09G007700Melon (DHL92) v3.5.1cmomeB025
CmoCh09G007700Watermelon (Charleston Gray)cmowcgB009
CmoCh09G007700Watermelon (Charleston Gray)cmowcgB031
CmoCh09G007700Watermelon (97103) v1cmowmB016
CmoCh09G007700Watermelon (97103) v1cmowmB030
CmoCh09G007700Cucurbita pepo (Zucchini)cmocpeB010
CmoCh09G007700Cucurbita pepo (Zucchini)cmocpeB016
CmoCh09G007700Bottle gourd (USVL1VR-Ls)cmolsiB015
CmoCh09G007700Bottle gourd (USVL1VR-Ls)cmolsiB029
CmoCh09G007700Cucumber (Gy14) v2cgybcmoB684