CmoCh09G003520 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G003520
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Retrovirus-related Pol polyprotein from transposon TNT 1-94) (3.1.13.-)
Location	Cmo_Chr09 : 1524593 .. 1525871 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAATCAAGTTTTTCAGCCGTTGCACCACCAGTCTTCGATGGAGACAATTATCAAATGTGGGCAGTTCGTATGGAGACTTATTTGGAGGCCTTGGATCTTTGGGAAGCAATAGAAGAGGATTACGAGGTCCCTCCGCTTCCAGCAAATCCTACTGTAGCACAAATCAAATTACAGAAGGAAAAGAAAACAAGGAAATCAAAGGCAAAAGCTTGCCTATTTGCCACTGTATCTAAAATGATTTCATGCGAATAATGTCCCTCAAAACAGCAAAAGAAATCTGGGATTATCTCAAGGCTGAATATGAAGGAGATGAGAGGATTCGTGGAATGAAAGTCCTGAATTTGATCAAGGATTTCGAGTTGCAGAAGATGAAGGAGTCAGAGTCGGTAAAAGAGTACTCAGACAAACTTCTCAGCATCGCCAACAAGGTGAGATTGCTTGGTTCTGTATTAAATGATTCCAGGATCGTTGAAAAGCTGCTAGTCACTCCTCCAGAGAAGTTTGAAGCCACCATTACTACTCTGGAGAACACCAAAGACTTGTCAAAGACTTCTCTTAGAGAGCTCTTGAATGCTTTAAAAGCGCAAGAGCAAAGGAGGTCTATGAGACAAGAAGGGGTGATTGAAGGCGCCTTACTTGTTGAGCATCAAGACAGCCGCAGGTATAAAAACAACTAAACTTTCAAAAATCAATTGACGTATGGAGATTCATCTGCCAATTATCAAAAGACAAAAGGAAGAGGTTTCAAAAAATCCTATTCACCTTGCCGCCATTGTGAGAAGAAAGGTCATCCACCATACAAGTGTTGGAGAAGACCTGACGCCTTCTGCTCCAAATGCAATCAACTTGGACATGAAGCTGTGATCTGCAAAGCCAAAGATCCGGTGAAAGAAGTAGATGCACAGGTCGTTGATCAAGAAGAAGAAGAAGAAGAAGAAGATCAATTGTTTATGGTCACTTCTTCCTCAAGCAAAGAATCAAGCGAGAGCTGGTTGATTGATAGTGGGTGCACAAATCACATGACATATGACAAGGAGTCTTTTGAGGAATTAAGAGACACCGAAGATAAAAGAGTGAGGATTGGCAATGGTGAACACTTGGAAGTCAAGGGAAAAGGCACAGTAGCTATAACAAGCTATGAAGGTACAAAATTTATTCCAGATGTTTTATTTGTGCCTAAAATTGATCAAAATCTCTTGAGCGTTGGTCAGTTACTTAATAAAGGCTATAAAGTATTGTTTGAGAATAAGCAGTGCTGGATCAAAGATGCTAG

mRNA sequence

ATGGGAGAATCAAGTTTTTCAGCCGTTGCACCACCAGTCTTCGATGGAGACAATTATCAAATGTGGGCAGTTCGTATGGAGACTTATTTGGAGGCCTTGGATCTTTGGGAAGCAATAGAAGAGGATTACGAGGTCCCTCCGCTTCCAGCAAATCCTACTGTAGCACAAATCAAATTACAGAAGGAAAAGAAAACAAGGAAATCAAAGGCAAAAGCTTGCCTATTTGCCACTGCTGAATATGAAGGAGATGAGAGGATTCGTGGAATGAAAGTCCTGAATTTGATCAAGGATTTCGAGTTGCAGAAGATGAAGGAGTCAGAGTCGGTAAAAGAGTACTCAGACAAACTTCTCAGCATCGCCAACAAGGTGAGATTGCTTGGTTCTGTATTAAATGATTCCAGGATCGTTGAAAAGCTGCTAGTCACTCCTCCAGAGAAGTTTGAAGCCACCATTACTACTCTGGAGAACACCAAAGACTTGTCAAAGACTTCTCTTAGAGAGCTCTTGAATGCTTTAAAAGCGCAAGAGCAAAGGAGGTCTATGAGACAAGAAGGGGTGATTGAAGGCGCCTTACTTGTTGAGCATCAAGACAGCCGCAGACCTGACGCCTTCTGCTCCAAATGCAATCAACTTGGACATGAAGCTGTGATCTGCAAAGCCAAAGATCCGGTGAAAGAAGTAGATGCACAGGTCGTTGATCAAGAAGAAGAAGAAGAAGAAGAAGATCAATTGTTTATGGTCACTTCTTCCTCAAGCAAAGAATCAAGCGAGAGCTGGTTGATTGATAGTGGGTGCACAAATCACATGACATATGACAAGGAGTCTTTTGAGGAATTAAGAGACACCGAAGATAAAAGAGTGAGGATTGGCAATGGTGAACACTTGGAAGTCAAGGGAAAAGGCACAGTAGCTATAACAAGCTATGAAGTGCTGGATCAAAGATGCTAG

Coding sequence (CDS)

ATGGGAGAATCAAGTTTTTCAGCCGTTGCACCACCAGTCTTCGATGGAGACAATTATCAAATGTGGGCAGTTCGTATGGAGACTTATTTGGAGGCCTTGGATCTTTGGGAAGCAATAGAAGAGGATTACGAGGTCCCTCCGCTTCCAGCAAATCCTACTGTAGCACAAATCAAATTACAGAAGGAAAAGAAAACAAGGAAATCAAAGGCAAAAGCTTGCCTATTTGCCACTGCTGAATATGAAGGAGATGAGAGGATTCGTGGAATGAAAGTCCTGAATTTGATCAAGGATTTCGAGTTGCAGAAGATGAAGGAGTCAGAGTCGGTAAAAGAGTACTCAGACAAACTTCTCAGCATCGCCAACAAGGTGAGATTGCTTGGTTCTGTATTAAATGATTCCAGGATCGTTGAAAAGCTGCTAGTCACTCCTCCAGAGAAGTTTGAAGCCACCATTACTACTCTGGAGAACACCAAAGACTTGTCAAAGACTTCTCTTAGAGAGCTCTTGAATGCTTTAAAAGCGCAAGAGCAAAGGAGGTCTATGAGACAAGAAGGGGTGATTGAAGGCGCCTTACTTGTTGAGCATCAAGACAGCCGCAGACCTGACGCCTTCTGCTCCAAATGCAATCAACTTGGACATGAAGCTGTGATCTGCAAAGCCAAAGATCCGGTGAAAGAAGTAGATGCACAGGTCGTTGATCAAGAAGAAGAAGAAGAAGAAGAAGATCAATTGTTTATGGTCACTTCTTCCTCAAGCAAAGAATCAAGCGAGAGCTGGTTGATTGATAGTGGGTGCACAAATCACATGACATATGACAAGGAGTCTTTTGAGGAATTAAGAGACACCGAAGATAAAAGAGTGAGGATTGGCAATGGTGAACACTTGGAAGTCAAGGGAAAAGGCACAGTAGCTATAACAAGCTATGAAGTGCTGGATCAAAGATGCTAG

Homology

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BLAST of CmoCh09G003520 vs. TrEMBL
Match: A0A151TNI1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_022187 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 2.2e-98
Identity = 204/363 (56.20%), Postives = 249/363 (68.60%), Query Frame = 1


Query: 3   ESSFSAVAPPVFDGDNYQMWAVRMETYLEALDLWEAIEEDYEVPPLPANPTVAQIKLQKE 62
           ES+FS VAPPVFDGDNY  WAV+ME YLEALDLWEA+E +YEV  L  NPTVAQIK+ KE
Sbjct: 4   ESNFSQVAPPVFDGDNYDRWAVKMEAYLEALDLWEAVEAEYEVLLLLNNPTVAQIKMHKE 63

Query: 63  KKTRKSKAKACLFATA-------------------EYEGDERIRGMKVLNLIKDFELQKM 122
           +KTRK+KAK CLFA                     EY GDERIR M+VLNL+++FELQ+M
Sbjct: 64  RKTRKAKAKTCLFAGVSQTIFTRIMTLKSAKEIWDEYAGDERIRSMQVLNLMREFELQRM 123

Query: 123 KESESVKEYSDKLLSIANKVRLLGSVLNDSRIVEKLLVTPPEKFEATITTLENTKDLSKT 182
           KESE +KEYSDKLL IANK+RLLGS   DSRIVEK+LVT PEK+EA+I +LENT+DLSK 
Sbjct: 124 KESEKIKEYSDKLLGIANKIRLLGSNFPDSRIVEKILVTVPEKYEASIASLENTRDLSKI 183

Query: 183 SLRELLNALKAQEQRRSMRQEGVIEGALLVEHQDSR------------------------ 242
           +  E+L+A +AQEQR  MR++  +EGALLV+ Q ++                        
Sbjct: 184 TFAEVLHAFQAQEQRSLMREDHAVEGALLVKSQQAKNYKKNYPASSYDKGKGGKKSYPPC 243

Query: 243 ---------------RPDAFCSKCNQLGHEAVICKAKDPVKEVDAQVVDQEEEEEEEDQL 302
                          RPDA C+KCNQ+GHEA+ICK+K+  +E +A+  DQ    EEEDQL
Sbjct: 244 QHCGKMGHAPFKCWQRPDAKCNKCNQMGHEAIICKSKNQQQEEEAKPADQ----EEEDQL 303

Query: 303 FMVTSSSSKESSESWLIDSGCTNHMTYDKESFEELRDTEDKRVRIGNGEHLEVKGKGTVA 308
           F+ T   S ESSESWLIDS CTNHMT++K  F +LR T   +VRIGNG+H+ VKGKGT+A
Sbjct: 304 FVATCFLSSESSESWLIDSSCTNHMTFNKALFRDLRPTNVTKVRIGNGDHISVKGKGTIA 362

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BLAST of CmoCh09G003520 vs. TrEMBL
Match: A0A151SFK6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_024452 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 4.0e-92
Identity = 194/358 (54.19%), Postives = 243/358 (67.88%), Query Frame = 1


Query: 3   ESSFSAVAPPVFDGDNYQMWAVRMETYLEALDLWEAIEEDYEVPPLPANPTVAQIKLQKE 62
           E+SFS    PVFDG+NY +WAVRME+YLEA DLWEA+EEDY+VPPLP NPT+AQIK  KE
Sbjct: 4   ETSFSQATLPVFDGENYDLWAVRMESYLEAFDLWEAVEEDYDVPPLPDNPTMAQIKNHKE 63

Query: 63  KKTRKSKAKACLFA-----------------------TAEYEGDERIRGMKVLNLIKDFE 122
           KKTRK+KAK+CLFA                        AEY GDERIR M+VLNL+++FE
Sbjct: 64  KKTRKAKAKSCLFAGVSTTIFTRIMTLKSAKAIWDYLKAEYVGDERIRSMQVLNLMREFE 123

Query: 123 LQKMKESESVKEYSDKLLSIANKVRLLGSVLNDSRIVEKLLVTPPEKFEATITTLENTKD 182
           LQ+MKESE++KEYSDKLLSIANK+RLLGS   DSRIVEK+LVT PE++EA+IT+LEN+K+
Sbjct: 124 LQRMKESETIKEYSDKLLSIANKIRLLGSDFADSRIVEKILVTVPERYEASITSLENSKN 183

Query: 183 LSKTSLRELLNALKAQEQRRSMRQEGVIEGALLVEH------------------------ 242
           LSK +L E+L+AL+AQEQRR MR++  +EGAL  +H                        
Sbjct: 184 LSKITLAEVLHALQAQEQRRLMREDHAVEGALSAKHHVAGYNKKNFFKKNPSTSNENTTN 243

Query: 243 -----QDSRRPDAFCSKCNQLGHEAVICKAKDPVKEVDAQVVDQEEEEEEEDQLFMVTSS 302
                +  ++    C  C ++GH    C      K  DA+  D +  +E EDQLF+ T  
Sbjct: 244 NQNKGKGKKKSYPPCQHCGKMGHPPFRC-----WKRPDAKCTDAQNAQENEDQLFVATCF 303

Query: 303 SSKESSESWLIDSGCTNHMTYDKESFEELRDTEDKRVRIGNGEHLEVKGKGTVAITSY 309
           S+  SSESWLIDSGCTNHMTYD+E F+ L +TE K VRIGNGE + VKGKG++ ITS+
Sbjct: 304 STNSSSESWLIDSGCTNHMTYDRELFKCLDNTEVKWVRIGNGEQIPVKGKGSIVITSH 356

[Close]

BLAST of CmoCh09G003520 vs. TrEMBL
Match: A0A151UAW8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_020663 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 2.0e-88
Identity = 192/350 (54.86%), Postives = 241/350 (68.86%), Query Frame = 1


Query: 3   ESSFSAVAPPVFDGDNYQMWAVRMETYLEALDLWEAIEEDYEVPPLPANPTVAQIKLQKE 62
           ES+FS +APP+F+ +NY +WAV+ME YLEALDLWEAIEEDYEV PLP NPTVAQI+  KE
Sbjct: 4   ESNFSQIAPPIFNEENYDLWAVKMEAYLEALDLWEAIEEDYEVLPLPDNPTVAQIRSHKE 63

Query: 63  KKTRKSKAKACLFATA-----------------------EYEGDERIRGMKVLNLIKDFE 122
           +K RK+KAK+CLFA                         EY GDERIR M+VLNL+++FE
Sbjct: 64  RKIRKAKAKSCLFAGVSQTIFTRVMALKTAKSIWDYLKEEYAGDERIRSMQVLNLMREFE 123

Query: 123 LQKMKESESVKEYSDKLLSIANKVRLLGSVLNDSRIVEKLLVTPPEKFEATITTLENTKD 182
           LQ+MKESE++KEYSDKLL IANKVRLLGS   DSRIVEK+LVT PE++EA+  +LENTK+
Sbjct: 124 LQRMKESETIKEYSDKLLGIANKVRLLGSDFADSRIVEKILVTVPERYEASKASLENTKN 183

Query: 183 LSKTSLRELLN-----ALKA------QEQRRSMRQEGVIEGALLVEHQDS---------- 242
           LSK +L E+ N     AL A      Q +++  ++           +Q            
Sbjct: 184 LSKITLAEVQNHVVEGALPAKHHEVEQSKKKHFKKNQASSNQSPTSNQMKGKGGHPPFKC 243

Query: 243 -RRPDAFCSKCNQLGHEAVICKAKDPVKEVDAQVVDQEEEEEEEDQLFMVTSSSSKESSE 302
            RRP+A CSKCNQ+GHEA+ICK K+   +  AQ+ DQ    EEED+LF+ T   S ES+E
Sbjct: 244 WRRPEAKCSKCNQMGHEAIICKNKN-CHDEGAQIADQ----EEEDRLFVATCFLSSESNE 303

Query: 303 SWLIDSGCTNHMTYDKESFEELRDTEDKRVRIGNGEHLEVKGKGTVAITS 308
           SWLIDSGCTNHMT+D+  F++LR T   +VRIGNG+++ VKGKGTVAITS
Sbjct: 304 SWLIDSGCTNHMTFDEALFKDLRPTNITKVRIGNGDYITVKGKGTVAITS 348

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BLAST of CmoCh09G003520 vs. TrEMBL
Match: M1B1W5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013513 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.6e-85
Identity = 188/353 (53.26%), Postives = 230/353 (65.16%), Query Frame = 1


Query: 26  METYLEALDLWEAIEEDYEVPPLPANPTVAQIKLQKEKKTRKSKAKACLFAT-------- 85
           METYL+A+D+WEA+EEDYEVP  P NPT++QIK  K++KTRKSKAKACLF+         
Sbjct: 1   METYLDAMDMWEAVEEDYEVPSFPNNPTISQIKNHKDRKTRKSKAKACLFSAISSSIFTR 60

Query: 86  ---------------AEYEGDERIRGMKVLNLIKDFELQKMKESESVKEYSDKLLSIANK 145
                           EYEGDE IRGM+VLNLI+DFE+QKMKE+E++K+YS++LL+IAN+
Sbjct: 61  IMSLKSAKAIWDYLKVEYEGDEMIRGMQVLNLIRDFEIQKMKETETIKDYSERLLNIANR 120

Query: 146 VRLLGSVLNDSRIVEKLLVTPPEKFEATITTLENTKDLSKTSLRELLNALKAQEQRRSMR 205
           VRLLGSVLNDSRIVEK+LVT PE+FEATI TLENTKDLSK +  ELLNAL+A EQRR MR
Sbjct: 121 VRLLGSVLNDSRIVEKILVTVPERFEATINTLENTKDLSKITFAELLNALQAHEQRRVMR 180

Query: 206 Q---------------------------EGVIEGAL------------LVEHQDS----- 265
           +                           EG+                 L +H        
Sbjct: 181 EEGNTEGALFAKPQDGGKNKKKKNKKNGEGISASTTKGKSGHSKKSYPLCKHNKKGHPSY 240

Query: 266 ---RRPDAFCSKCNQLGHEAVICKAKDPVKEVDAQVVDQEEEEEEEDQLFMVTSSSSKES 309
              RRPDA CSKCNQLGHE VICK     +E +AQ+VD +EE    DQLF+ T  SS+ S
Sbjct: 241 KCWRRPDARCSKCNQLGHEVVICKNNGQQQEAEAQIVDGKEE----DQLFVATCFSSRSS 300

[Close]

BLAST of CmoCh09G003520 vs. TrEMBL
Match: A0A151RSU4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_032829 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.0e-84
Identity = 183/344 (53.20%), Postives = 227/344 (65.99%), Query Frame = 1


Query: 26  METYLEALDLWEAIEEDYEVPPLPANPTVAQIKLQKEKKTRKSKAKACLFATA------- 85
           ME YLEALDLW+A+E +YEV PLP NP VAQIK+ KE+KTRK+KAK CLFA         
Sbjct: 1   MEAYLEALDLWKAVEAEYEVLPLPNNPIVAQIKMHKERKTRKAKAKTCLFAGVSQAIFTR 60

Query: 86  ----------------EYEGDERIRGMKVLNLIKDFELQKMKESESVKEYSDKLLSIANK 145
                           EY GDERIR MKVLNL+++FELQ+MKE E +KEYSDKLL IANK
Sbjct: 61  IKTLKSAKEIWDYLKEEYAGDERIRSMKVLNLMREFELQRMKEYEKIKEYSDKLLGIANK 120

Query: 146 VRLLGSVLNDSRIVEKLLVTPPEKFEATITTLENTKDLSKTSLRELLNALKAQEQRRSMR 205
           +RLLGS   DS IVEK+LVT  EK+EA+  +LENT+DLSK +  E+L+A +AQEQR  MR
Sbjct: 121 IRLLGSNFPDSIIVEKILVTVSEKYEASTASLENTRDLSKITFAEVLHAFQAQEQRSLMR 180

Query: 206 QEGVIEGALLVEHQDSR---------------------------------------RPDA 265
           ++  +EGALLV+ Q ++                                       RPDA
Sbjct: 181 EDHAVEGALLVKSQQAKNYKKNYPASSYDKGKGGKKSYPPCQHCGKMGHAPFRCWQRPDA 240

Query: 266 FCSKCNQLGHEAVICKAKDPVKEVDAQVVDQEEEEEEEDQLFMVTSSSSKESSESWLIDS 308
            C+KCNQ+GHEA+ICK+K+  +E +A+  DQ    +EEDQLF+ T   S ESSESWLIDS
Sbjct: 241 KCNKCNQMGHEAIICKSKNQQQEEEAKAADQ----KEEDQLFVATCFLSSESSESWLIDS 300

[Close]

BLAST of CmoCh09G003520 vs. NCBI nr
Match: gi|823251370|ref|XP_012458313.1| (PREDICTED: uncharacterized protein LOC105779111 [Gossypium raimondii])

HSP 1 Score: 444.9 bits (1143), Expect = 1.2e-121
Identity = 252/336 (75.00%), Postives = 272/336 (80.95%), Query Frame = 1


Query: 2   GESSFSAVAPPVFDGDNYQMWAVRMETYLEALDLWEAIEEDYEVPPLPANPTVAQIKLQK 61
           G SSFS VAPPVFDGDNYQMWAVRMETYLEALDLWE +EEDYEVPPLPANPTV QIK QK
Sbjct: 3   GGSSFSVVAPPVFDGDNYQMWAVRMETYLEALDLWELVEEDYEVPPLPANPTVPQIKAQK 62

Query: 62  EKKTRKSKAKACLFAT---------AEYEGDERIRGMKVLNLIKDFELQKMKESESVKEY 121
           EKKTRKSKAKACLFA          AEYEGDERIRGMKVLNLI+DFELQKMKESESVKEY
Sbjct: 63  EKKTRKSKAKACLFAAVKGNLDYLKAEYEGDERIRGMKVLNLIRDFELQKMKESESVKEY 122

Query: 122 SDKLLSIANKVRLLGSVLNDSRIVEKLLVTPPEKFEATITTLENTKDLSKTSLRELLNAL 181
           SD+LLSIANKVRLLGS LNDSRIVEKLLVT PEKFEATITTLENT DLSK SL ELLNAL
Sbjct: 123 SDRLLSIANKVRLLGSELNDSRIVEKLLVTVPEKFEATITTLENTNDLSKISLAELLNAL 182

Query: 182 KAQEQRRSMRQEGVIEGALLVEHQDSRRPDAFCSKCNQLGHEAVICKAKDPV-------- 241
           +AQEQRRSMRQEGVIEGAL V+HQD+ R +   S+  +  H+A+I +AK+ V        
Sbjct: 183 QAQEQRRSMRQEGVIEGALPVKHQDNNRYNLRTSQRVEKIHQAIIRRAKEEVSRNPTHLV 242

Query: 242 -----------KEVDAQVVDQEEEEEEEDQLFMVTSSSSKESSESWLIDSGCTNHMTYDK 301
                      +EVDAQV DQEEE    DQLF++T  S +ESSESWLI+SGCTNHMTYDK
Sbjct: 243 TIVRRKVKGQVQEVDAQVADQEEE----DQLFVLTCFSGRESSESWLINSGCTNHMTYDK 302

Query: 302 ESFEELRDTEDKRVRIGNGEHLEVKGKGTVAITSYE 310
               ELR+TE KRVRIGNGE+LEVKGKGTVAITSYE
Sbjct: 303 ----ELRNTEVKRVRIGNGEYLEVKGKGTVAITSYE 330

[Close]

BLAST of CmoCh09G003520 vs. NCBI nr
Match: gi|971545142|ref|XP_015162830.1| (PREDICTED: uncharacterized protein LOC107060037 [Solanum tuberosum])

HSP 1 Score: 410.6 bits (1054), Expect = 2.5e-111
Identity = 219/334 (65.57%), Postives = 262/334 (78.44%), Query Frame = 1


Query: 2   GESSFSAVAPPVFDGDNYQMWAVRMETYLEALDLWEAIEEDYEVPPLPANPTVAQIKLQK 61
           GE+SFS++APP F+G++YQ+WAVRM+TYLEALDLWEA+E+DYE+ PLP NPT+AQIK  K
Sbjct: 3   GEASFSSMAPPAFNGESYQIWAVRMQTYLEALDLWEAVEDDYEIVPLPNNPTIAQIKNHK 62

Query: 62  EKKTRKSKAKACLFATA-----------------------EYEGDERIRGMKVLNLIKDF 121
           E+KT KSKAKACL+                          EYEGDERIRGM+VLNL+++F
Sbjct: 63  ERKTMKSKAKACLYIAVSSTIFTRIMSLKSAKEVWDYLKTEYEGDERIRGMQVLNLVREF 122

Query: 122 ELQKMKESESVKEYSDKLLSIANKVRLLGSVLNDSRIVEKLLVTPPEKFEATITTLENTK 181
           ELQ+MKESE++KEYSD+LL+IAN+VRLLGS  NDSRIVEK+LVT PEKFEAT+TTLENTK
Sbjct: 123 ELQRMKESETIKEYSDRLLNIANRVRLLGSTFNDSRIVEKILVTVPEKFEATVTTLENTK 182

Query: 182 DLSKTSLRELLNALKAQEQRRSMRQEGVIEGALLVEHQ-----DSRRPDAFCSKCNQLGH 241
           DLSK +L ELL+A +AQEQRR MRQEG++EGALLV+HQ       +RPDA CSKCNQ GH
Sbjct: 183 DLSKITLAELLSAFQAQEQRRVMRQEGIVEGALLVKHQYDGRNKKKRPDAKCSKCNQQGH 242

Query: 242 EAVICKAKDPVKEVDAQVVDQEEEEEEEDQLFMVTSSSSKESSESWLIDSGCTNHMTYDK 301
           EAVICKAK    EV+AQV D+     EED LF+ T  +S +SSESWLIDSGC+NHMT DK
Sbjct: 243 EAVICKAKIQQPEVEAQVADR-----EEDHLFVATCFTSLDSSESWLIDSGCSNHMTSDK 302

Query: 302 ESFEELRDTEDKRVRIGNGEHLEVKGKGTVAITS 308
             F+EL +TE K+VRIGN E L VKGKG +AITS
Sbjct: 303 MLFKELWNTETKKVRIGNSECLAVKGKGAIAITS 331

[Close]

BLAST of CmoCh09G003520 vs. NCBI nr
Match: gi|823127429|ref|XP_012435705.1| (PREDICTED: uncharacterized protein LOC105762447 [Gossypium raimondii])

HSP 1 Score: 374.8 bits (961), Expect = 1.5e-100
Identity = 204/260 (78.46%), Postives = 214/260 (82.31%), Query Frame = 1


Query: 2   GESSFSAVAPPVFDGDNYQMWAVRMETYLEALDLWEAIEEDYEVPPLPANPTVAQIKLQK 61
           GESSFS  APPVFDGDNYQMWAVRMETYLEALDLWEA+EEDYEVPPL ANP+VAQIK QK
Sbjct: 3   GESSFSVAAPPVFDGDNYQMWAVRMETYLEALDLWEAVEEDYEVPPLLANPSVAQIKAQK 62

Query: 62  EKKTRKSKAKACLFAT-----------------------AEYEGDERIRGMKVLNLIKDF 121
           E K RKSK KACLFA                        AEY GDERIRGMKVLNLI+DF
Sbjct: 63  ENKIRKSKEKACLFAAVSQMIFTRIMSLKSAKEIWDYLKAEYAGDERIRGMKVLNLIRDF 122

Query: 122 ELQKMKESESVKEYSDKLLSIANKVRLLGSVLNDSRIVEKLLVTPPEKFEATITTLENTK 181
           ELQKMKESESVKEYSD+LLSIANKVRLLGS LNDSRIVE LLVT PEKFEATITTLENTK
Sbjct: 123 ELQKMKESESVKEYSDRLLSIANKVRLLGSELNDSRIVENLLVTIPEKFEATITTLENTK 182

Query: 182 DLSKTSLRELLNALKAQEQRRSMRQEGVIEGALLVEHQDSRRPDAFCSKCNQLGHEAVIC 239
           DLSK  L +LLNAL+ QEQRRSMRQEGVIEGAL V+HQD+ RPDA CSKCNQLGHEAVIC
Sbjct: 183 DLSKICLVKLLNALQEQEQRRSMRQEGVIEGALPVKHQDNNRPDAKCSKCNQLGHEAVIC 242

[Close]

BLAST of CmoCh09G003520 vs. NCBI nr
Match: gi|1012357371|gb|KYP68556.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 367.1 bits (941), Expect = 3.1e-98
Identity = 204/363 (56.20%), Postives = 249/363 (68.60%), Query Frame = 1


Query: 3   ESSFSAVAPPVFDGDNYQMWAVRMETYLEALDLWEAIEEDYEVPPLPANPTVAQIKLQKE 62
           ES+FS VAPPVFDGDNY  WAV+ME YLEALDLWEA+E +YEV  L  NPTVAQIK+ KE
Sbjct: 4   ESNFSQVAPPVFDGDNYDRWAVKMEAYLEALDLWEAVEAEYEVLLLLNNPTVAQIKMHKE 63

Query: 63  KKTRKSKAKACLFATA-------------------EYEGDERIRGMKVLNLIKDFELQKM 122
           +KTRK+KAK CLFA                     EY GDERIR M+VLNL+++FELQ+M
Sbjct: 64  RKTRKAKAKTCLFAGVSQTIFTRIMTLKSAKEIWDEYAGDERIRSMQVLNLMREFELQRM 123

Query: 123 KESESVKEYSDKLLSIANKVRLLGSVLNDSRIVEKLLVTPPEKFEATITTLENTKDLSKT 182
           KESE +KEYSDKLL IANK+RLLGS   DSRIVEK+LVT PEK+EA+I +LENT+DLSK 
Sbjct: 124 KESEKIKEYSDKLLGIANKIRLLGSNFPDSRIVEKILVTVPEKYEASIASLENTRDLSKI 183

Query: 183 SLRELLNALKAQEQRRSMRQEGVIEGALLVEHQDSR------------------------ 242
           +  E+L+A +AQEQR  MR++  +EGALLV+ Q ++                        
Sbjct: 184 TFAEVLHAFQAQEQRSLMREDHAVEGALLVKSQQAKNYKKNYPASSYDKGKGGKKSYPPC 243

Query: 243 ---------------RPDAFCSKCNQLGHEAVICKAKDPVKEVDAQVVDQEEEEEEEDQL 302
                          RPDA C+KCNQ+GHEA+ICK+K+  +E +A+  DQ    EEEDQL
Sbjct: 244 QHCGKMGHAPFKCWQRPDAKCNKCNQMGHEAIICKSKNQQQEEEAKPADQ----EEEDQL 303

Query: 303 FMVTSSSSKESSESWLIDSGCTNHMTYDKESFEELRDTEDKRVRIGNGEHLEVKGKGTVA 308
           F+ T   S ESSESWLIDS CTNHMT++K  F +LR T   +VRIGNG+H+ VKGKGT+A
Sbjct: 304 FVATCFLSSESSESWLIDSSCTNHMTFNKALFRDLRPTNVTKVRIGNGDHISVKGKGTIA 362

[Close]

BLAST of CmoCh09G003520 vs. NCBI nr
Match: gi|697187607|ref|XP_009602835.1| (PREDICTED: uncharacterized protein LOC104097920 [Nicotiana tomentosiformis])

HSP 1 Score: 364.0 bits (933), Expect = 2.6e-97
Identity = 203/353 (57.51%), Postives = 246/353 (69.69%), Query Frame = 1


Query: 2   GESSFSAVAPPVFDGDNYQMWAVRMETYLEALDLWEAIEEDYEVPPLPANPTVAQIKLQK 61
           GE+SFS++APP FDG++YQ+WAVRM+TYLEALDLWEA+E+DYE+ PLP NPT+AQIK  K
Sbjct: 3   GETSFSSIAPPTFDGESYQIWAVRMQTYLEALDLWEAVEDDYEIAPLPNNPTMAQIKNYK 62

Query: 62  EKKTRKSKAKACLFATA-----------------------EYEGDERIRGMKVLNLIKDF 121
           E+KTRKSKAKACLFA                         EYEGDE++RGM+VLNL+++F
Sbjct: 63  ERKTRKSKAKACLFAAVSSTIFTRIMSLKSAKEVWDYLKTEYEGDEKVRGMQVLNLVREF 122

Query: 122 ELQKMKESESVKEYSDKLLSIANKVRLLGSVLNDSRIVEKLLVTPPEKFEATITTLENTK 181
           ELQ+MK+SE++KEYSD+LL+IAN+VRLLGS LNDSRIVEK+LVT PE+FEATITTLENTK
Sbjct: 123 ELQRMKDSETIKEYSDRLLNIANRVRLLGSTLNDSRIVEKILVTVPERFEATITTLENTK 182

Query: 182 DLSKTSLRELLNALKAQEQRRSMRQEGVIEGALLVEHQDSRR------------------ 241
           D+SK +L ELL+A +AQEQRR MRQEG +EGAL V+HQDSRR                  
Sbjct: 183 DMSKITLAELLSAFQAQEQRRVMRQEGAVEGALPVKHQDSRRNQKKQNKKTQGANNENVG 242

Query: 242 ---------------PDAFC------------------SKCNQLGHEAVICKAKDPVKEV 281
                          P   C                  SKCNQ GHEAVICK+K    EV
Sbjct: 243 NNNKIKTGSKKTNFPPCQHCGKKGHPPFKCWRRPDAKCSKCNQQGHEAVICKSKIQQHEV 302

The following BLAST results are available for this feature:

BLAST of CmoCh09G003520 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh09G003520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151TNI1_CAJCA	2.2e-98	56.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151SFK6_CAJCA	4.0e-92	54.19	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151UAW8_CAJCA	2.0e-88	54.86	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
M1B1W5_SOLTU	1.6e-85	53.26	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013513 PE=4 SV=1	[more]
A0A151RSU4_CAJCA	1.0e-84	53.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]

BLAST of CmoCh09G003520 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh09G003520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|823251370\|ref\|XP_012458313.1\|	1.2e-121	75.00	PREDICTED: uncharacterized protein LOC105779111 [Gossypium raimondii]	[more]
gi\|971545142\|ref\|XP_015162830.1\|	2.5e-111	65.57	PREDICTED: uncharacterized protein LOC107060037 [Solanum tuberosum]	[more]
gi\|823127429\|ref\|XP_012435705.1\|	1.5e-100	78.46	PREDICTED: uncharacterized protein LOC105762447 [Gossypium raimondii]	[more]
gi\|1012357371\|gb\|KYP68556.1\|	3.1e-98	56.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|697187607\|ref\|XP_009602835.1\|	2.6e-97	57.51	PREDICTED: uncharacterized protein LOC104097920 [Nicotiana tomentosiformis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025314	DUF4219

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G003520.1	CmoCh09G003520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025314	Domain of unknown function DUF4219	PFAM	PF13961	DUF4219	coord: 14..40 score: 6.0
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 7..306 score: 4.6
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 79..181 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G003520	Cucumber (Gy14) v2	cgybcmoB433
CmoCh09G003520	Cucumber (Gy14) v2	cgybcmoB872
CmoCh09G003520	Melon (DHL92) v3.6.1	cmomedB009
CmoCh09G003520	Melon (DHL92) v3.6.1	cmomedB029
CmoCh09G003520	Silver-seed gourd	carcmoB0127
CmoCh09G003520	Silver-seed gourd	carcmoB0865
CmoCh09G003520	Silver-seed gourd	carcmoB1040
CmoCh09G003520	Silver-seed gourd	carcmoB1196
CmoCh09G003520	Cucumber (Chinese Long) v3	cmocucB0015
CmoCh09G003520	Cucumber (Chinese Long) v3	cmocucB0042
CmoCh09G003520	Watermelon (97103) v2	cmowmbB038
CmoCh09G003520	Watermelon (97103) v2	cmowmbB016
CmoCh09G003520	Wax gourd	cmowgoB0029
CmoCh09G003520	Wax gourd	cmowgoB0038
CmoCh09G003520	Cucurbita maxima (Rimu)	cmacmoB435
CmoCh09G003520	Cucurbita moschata (Rifu)	cmocmoB003
CmoCh09G003520	Cucurbita moschata (Rifu)	cmocmoB014
CmoCh09G003520	Cucumber (Gy14) v1	cgycmoB0820
CmoCh09G003520	Cucumber (Gy14) v1	cgycmoB0978
CmoCh09G003520	Cucurbita maxima (Rimu)	cmacmoB027
CmoCh09G003520	Cucurbita maxima (Rimu)	cmacmoB164
CmoCh09G003520	Wild cucumber (PI 183967)	cmocpiB011
CmoCh09G003520	Wild cucumber (PI 183967)	cmocpiB038
CmoCh09G003520	Cucumber (Chinese Long) v2	cmocuB011
CmoCh09G003520	Cucumber (Chinese Long) v2	cmocuB035
CmoCh09G003520	Melon (DHL92) v3.5.1	cmomeB010
CmoCh09G003520	Melon (DHL92) v3.5.1	cmomeB029
CmoCh09G003520	Watermelon (Charleston Gray)	cmowcgB017
CmoCh09G003520	Watermelon (97103) v1	cmowmB004
CmoCh09G003520	Watermelon (97103) v1	cmowmB020
CmoCh09G003520	Cucurbita pepo (Zucchini)	cmocpeB008
CmoCh09G003520	Cucurbita pepo (Zucchini)	cmocpeB020
CmoCh09G003520	Cucurbita pepo (Zucchini)	cmocpeB034
CmoCh09G003520	Bottle gourd (USVL1VR-Ls)	cmolsiB009
CmoCh09G003520	Bottle gourd (USVL1VR-Ls)	cmolsiB012