CmoCh09G003350 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTATATACTCCCGGGAAAACCATCGCCGGCGACTTTCTTTCCGTCCGCACCGAACCCCAGACCTCTAATTTCACCTTTCAAAAACCCAAGACCATTCCACCTCCGAAATTCCCCTTCCAGAATATCCCTCTCCTTCTCTTTCCGAAAAGGAAACAACATGCCGTCGGATACTGGCTGCCCTGTTCCGCCGGAGCAGCTGCCGATTAATGAATATCAGACTCTCTCCACCTCTTTCCCTTTCTCCTGGGCTGTCGGAGATATAGTTGAGTACTGTTCTCGATTGGTCGCCACCGGTGCTTCCTTTGCGCTCTTCATAGGACTTCCGGTTGCTTGGTTCGGCACCGTGGGGGTCGAATCGGATCCGTTGAGTCGATCTCTTTGCGCTGTTTCGAGTGGAATATTATTCGTTACGATCGCGGTTGTCAGGATGTATCTCGGTTGGGCTTACGTCGGTAACCGTCTACTCAGTGCGACTGTAGAATGTAAACTCTCATTTCTGTGTTTCTTACTTTTAGCCCTAGAATCGCAGTTCTTCGTTCAAAGATAGTACTGGATTCTTTTCTTTCCATGTCTAGCGAAAAAAATTTCATCATCGTTCTGAAATTTTCCTTTATACAGACGAAGAGACCGGATGGTACGACGGCCAGGTACACTCATCCAGTTCTTCTTCTTCTTCTCATAGGATCAAGATTCCATTTCATCTCTGAAATTAAGACCTCATGTTTGCAGATTTGGGTAAAAACTGCCGAAGTTTTAGCCCGCGATCGCCTCCTCGGTTCCTACACTGTAAGCAACCGATCTCGATCCTAATTTCGACTTCCTCTCCATAAATCCAAGTTTCAGTTGCAATTTAGAAATCTTCTCAGGTGAAGCCGGTGCTCAGTAGGCTAAAATACACTCTCGTTAGCCTTGCGGCATCTCTGTTTGTGTCCATTATTGTGCTCATCAACATCGATGGAAGCCAATTGCTGGGGCCTTTCTTCACCGGAAAATATGCAGCAGATGACAGCAGCAGCAGGGTCATTCCCGGCGTTTATAGCGACGAATCCGCCAGATCTTTCGAGCCTGATGCGTTCTGTGGGCGTGGCGAAGATGATCTTCCCAATGACATTCACTTCGCTGGTAACTGATTGATTAATATTTTTTTTTCTTTAAATAATAATTTTTTAAAATTATCTATTTTCTCTGTTTCGTACGTTTCTAATTTCATGAGAGAGTAGATTGAAACTGGCAGGCTTAATTTGTAAAGGAAAAGCCCAAATCACATAATGAGCCCAGCCCAAATCATAGAATGAGCCCAGCCCAGTAGCTACCGCACCAGTTTCTACAGAATGAGCCCAGCCCAGTAGCCACCTCACCAGTTTCCACAGACTCAGCCCAAATGCTCCTCACTATTTGTTGCTTAATAGTTAACCAATAAGAAGCTGACACCTGTATTGCGTTAAATTATTATTTACTTTAATTATATTCTCTTTTTTTTTTTTGGATAAGACAATAATTTATTACTTTTTTGTTGTCGAATTTTCCGTAAATCCTGTTTACAAATTTTTCAATCAACGACTTTTTTTTTACTGTTCAGTCCGTTTTTCAATAAATAAATAAATAAATAAAATTATCTCCATCGGCTTCACGCTTCCCAATGTAATATTTCGATTTTCCACATACTTTAGGCATAGTCCAATTTTGTGGCTGAATCATCGTCATTACATGTGACC ATGTATATACTCCCGGGAAAACCATCGCCGGCGACTTTCTTTCCGTCCGCACCGAACCCCAGACCTCTAATTTCACCTTTCAAAAACCCAAGACCATTCCACCTCCGAAATTCCCCTTCCAGAATATCCCTCTCCTTCTCTTTCCGAAAAGGAAACAACATGCCGTCGGATACTGGCTGCCCTGTTCCGCCGGAGCAGCTGCCGATTAATGAATATCAGACTCTCTCCACCTCTTTCCCTTTCTCCTGGGCTGTCGGAGATATAGTTGAGTACTGTTCTCGATTGGTCGCCACCGGTGCTTCCTTTGCGCTCTTCATAGGACTTCCGGTTGCTTGGTTCGGCACCGTGGGGGTCGAATCGGATCCGTTGAGTCGATCTCTTTGCGCTGTTTCGAGTGGAATATTATTCGTTACGATCGCGGTTGTCAGGATGTATCTCGGTTGGGCTTACGTCGGTAACCGTCTACTCAGTGCGACTGTAGAATACGAAGAGACCGGATGGTACGACGGCCAGATTTGGGTAAAAACTGCCGAAGTTTTAGCCCGCGATCGCCTCCTCGGTTCCTACACTGTGAAGCCGGTGCTCAGTAGGCTAAAATACACTCTCGTTAGCCTTGCGGCATCTCTGTTTGTGTCCATTATTGTGCTCATCAACATCGATGGAAGCCAATTGCTGGGGCCTTTCTTCACCGGAAAATATGCAGCAGATGACAGCAGCAGCAGGGTCATTCCCGGCGTTTATAGCGACGAATCCGCCAGATCTTTCGAGCCTGATGCGTTCTGTGGGCGTGGCGAAGATGATCTTCCCAATGACATTCACTTCGCTGATTGAAACTGGCAGGCTTAATTTGTAAAGGAAAAGCCCAAATCACATAATGAGCCCAGCCCAAATCATAGAATGAGCCCAGCCCAGTAGCTACCGCACCAGTTTCTACAGAATGAGCCCAGCCCAGTAGCCACCTCACCAGTTTCCACAGACTCAGCCCAAATGCTCCTCACTATTTGTTGCTTAATAGTTAACCAATAAGAAGCTGACACCTGTATTGCGTTAAATTATTATTTACTTTAATTATATTCTCTTTTTTTTTTTTGGATAAGACAATAATTTATTACTTTTTTGTTGTCGAATTTTCCGTAAATCCTGTTTACAAATTTTTCAATCAACGACTTTTTTTTTACTGTTCAGTCCGTTTTTCAATAAATAAATAAATAAATAAAATTATCTCCATCGGCTTCACGCTTCCCAATGTAATATTTCGATTTTCCACATACTTTAGGCATAGTCCAATTTTGTGGCTGAATCATCGTCATTACATGTGACC ATGTATATACTCCCGGGAAAACCATCGCCGGCGACTTTCTTTCCGTCCGCACCGAACCCCAGACCTCTAATTTCACCTTTCAAAAACCCAAGACCATTCCACCTCCGAAATTCCCCTTCCAGAATATCCCTCTCCTTCTCTTTCCGAAAAGGAAACAACATGCCGTCGGATACTGGCTGCCCTGTTCCGCCGGAGCAGCTGCCGATTAATGAATATCAGACTCTCTCCACCTCTTTCCCTTTCTCCTGGGCTGTCGGAGATATAGTTGAGTACTGTTCTCGATTGGTCGCCACCGGTGCTTCCTTTGCGCTCTTCATAGGACTTCCGGTTGCTTGGTTCGGCACCGTGGGGGTCGAATCGGATCCGTTGAGTCGATCTCTTTGCGCTGTTTCGAGTGGAATATTATTCGTTACGATCGCGGTTGTCAGGATGTATCTCGGTTGGGCTTACGTCGGTAACCGTCTACTCAGTGCGACTGTAGAATACGAAGAGACCGGATGGTACGACGGCCAGATTTGGGTAAAAACTGCCGAAGTTTTAGCCCGCGATCGCCTCCTCGGTTCCTACACTGTGAAGCCGGTGCTCAGTAGGCTAAAATACACTCTCGTTAGCCTTGCGGCATCTCTGTTTGTGTCCATTATTGTGCTCATCAACATCGATGGAAGCCAATTGCTGGGGCCTTTCTTCACCGGAAAATATGCAGCAGATGACAGCAGCAGCAGGGTCATTCCCGGCGTTTATAGCGACGAATCCGCCAGATCTTTCGAGCCTGATGCGTTCTGTGGGCGTGGCGAAGATGATCTTCCCAATGACATTCACTTCGCTGATTGA
BLAST of CmoCh09G003350 vs. Swiss-Prot
Match: YCF36_CYAPA (Uncharacterized protein ycf36 OS=Cyanophora paradoxa GN=ycf36 PE=3 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 1.9e-27 Identity = 64/145 (44.14%), Postives = 93/145 (64.14%), Query Frame = 1
BLAST of CmoCh09G003350 vs. Swiss-Prot
Match: YCF36_PORPU (Uncharacterized protein ycf36 OS=Porphyra purpurea GN=ycf36 PE=3 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 3.4e-24 Identity = 61/147 (41.50%), Postives = 84/147 (57.14%), Query Frame = 1
BLAST of CmoCh09G003350 vs. Swiss-Prot
Match: YCF36_PYRYE (Uncharacterized protein ycf36 OS=Pyropia yezoensis GN=ycf36 PE=3 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 3.8e-23 Identity = 64/161 (39.75%), Postives = 91/161 (56.52%), Query Frame = 1
BLAST of CmoCh09G003350 vs. Swiss-Prot
Match: YCF36_GUITH (Uncharacterized protein ycf36 OS=Guillardia theta GN=ycf36 PE=3 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 4.6e-21 Identity = 55/140 (39.29%), Postives = 78/140 (55.71%), Query Frame = 1
BLAST of CmoCh09G003350 vs. TrEMBL
Match: A0A0A0L3Z3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G646010 PE=4 SV=1) HSP 1 Score: 462.6 bits (1189), Expect = 3.3e-127 Identity = 232/268 (86.57%), Postives = 243/268 (90.67%), Query Frame = 1
BLAST of CmoCh09G003350 vs. TrEMBL
Match: F6H3P4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g01320 PE=4 SV=1) HSP 1 Score: 345.1 bits (884), Expect = 7.8e-92 Identity = 185/259 (71.43%), Postives = 202/259 (77.99%), Query Frame = 1
BLAST of CmoCh09G003350 vs. TrEMBL
Match: B9RRS9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0797580 PE=4 SV=1) HSP 1 Score: 329.3 bits (843), Expect = 4.4e-87 Identity = 178/267 (66.67%), Postives = 203/267 (76.03%), Query Frame = 1
BLAST of CmoCh09G003350 vs. TrEMBL
Match: A0A059CUR1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C03046 PE=4 SV=1) HSP 1 Score: 323.6 bits (828), Expect = 2.4e-85 Identity = 171/258 (66.28%), Postives = 192/258 (74.42%), Query Frame = 1
BLAST of CmoCh09G003350 vs. TrEMBL
Match: M5XNJ5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010221mg PE=4 SV=1) HSP 1 Score: 322.0 bits (824), Expect = 7.0e-85 Identity = 167/262 (63.74%), Postives = 197/262 (75.19%), Query Frame = 1
BLAST of CmoCh09G003350 vs. TAIR10
Match: AT5G11840.1 (AT5G11840.1 Protein of unknown function (DUF1230)) HSP 1 Score: 279.3 bits (713), Expect = 2.6e-75 Identity = 152/260 (58.46%), Postives = 185/260 (71.15%), Query Frame = 1
BLAST of CmoCh09G003350 vs. TAIR10
Match: AT5G67370.1 (AT5G67370.1 Protein of unknown function (DUF1230)) HSP 1 Score: 135.6 bits (340), Expect = 4.7e-32 Identity = 79/174 (45.40%), Postives = 104/174 (59.77%), Query Frame = 1
BLAST of CmoCh09G003350 vs. NCBI nr
Match: gi|659103819|ref|XP_008452715.1| (PREDICTED: uncharacterized protein ycf36 [Cucumis melo]) HSP 1 Score: 464.2 bits (1193), Expect = 1.6e-127 Identity = 233/268 (86.94%), Postives = 244/268 (91.04%), Query Frame = 1
BLAST of CmoCh09G003350 vs. NCBI nr
Match: gi|449447116|ref|XP_004141315.1| (PREDICTED: uncharacterized protein ycf36 [Cucumis sativus]) HSP 1 Score: 462.6 bits (1189), Expect = 4.8e-127 Identity = 232/268 (86.57%), Postives = 243/268 (90.67%), Query Frame = 1
BLAST of CmoCh09G003350 vs. NCBI nr
Match: gi|225429556|ref|XP_002279783.1| (PREDICTED: uncharacterized protein ycf36 [Vitis vinifera]) HSP 1 Score: 345.1 bits (884), Expect = 1.1e-91 Identity = 185/259 (71.43%), Postives = 202/259 (77.99%), Query Frame = 1
BLAST of CmoCh09G003350 vs. NCBI nr
Match: gi|1009134449|ref|XP_015884453.1| (PREDICTED: uncharacterized protein LOC107420101 [Ziziphus jujuba]) HSP 1 Score: 340.9 bits (873), Expect = 2.1e-90 Identity = 182/260 (70.00%), Postives = 203/260 (78.08%), Query Frame = 1
BLAST of CmoCh09G003350 vs. NCBI nr
Match: gi|223544268|gb|EEF45789.1| (conserved hypothetical protein [Ricinus communis]) HSP 1 Score: 329.3 bits (843), Expect = 6.3e-87 Identity = 178/267 (66.67%), Postives = 203/267 (76.03%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |