CmoCh09G002960 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh09G002960
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Serine carboxypeptidase, putative) (3.4.16.5)
LocationCmo_Chr09 : 1293420 .. 1295927 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAATAAGCGTGGTTTATTGTTGTTAGATCTTCAGGTTTGTGATAATGGAAATGTCTCTGTTATATTATTATTTCTCTGCTTATTAAAGAATATTTCCTTTTCTGTAACGCCCGCTCATCGGCAACGCGATTAACAGGAGTTACCATCATCAACGACAACATACTCTAACACCCAACCATAATCTCGAAATGTTTAAAAAAACATCCAGTAAAACATTTAAAACCGGTGCTATTTTAAACTTAAAACAACCAGAGTAAATTCTTGACAGCGAAAAACATAATTATACAAAACAGACACAGACATGGATTCCCAGTAGTCTTCAATGGTCTCGTCCTCGGTTGGCCTGCACCATCTAAATCTGGAAAGAAAAGTTATAATAATTTTGATGAGTAATTAGATTACTCAGTAAGTAGCTAGCTTATCACTCAAGAGTTCATAACTAATCTTTCCAGGTGTTTTTAGGTTTTATTCATCATTGACTCCTAGTTCTCTTACTAGGGTCATCTGTTCGTTAATGAGGTATCTCAGCTACCTCCAGCTAGGTTACTGACTCTCTCTCGATATGCTTATCTAGAATTTTCGGACTCGTATGTAAGACTCGCTCTCGGTCAAATACGGCCCGTCTACTAATTGCTCTGGCGGCCTGTTTATCTCATATACCAACGGTCAGGAGTACTCATGCTCCCTGACTTAGCACACAGCGCGTTGGCCAGGAACTCCGCGGGAATTAGTAGACTATCATACTCAGTAAATAAGCCATAGCTCAACCACCAATAAGCATATCTAGAGTCATAACCTTTCCATTAACATGCATAACATACTCACAGTTACTGCATGCTTTCATACATGTATCATGATCAACACGTAGAACATTCTGACAATCGTTTATATCATGCTTACATCACAGGCAAGCAGTCACAATATACAATAAACACGAACTATCATCGAAGCTCATCATAACTTATTAAGCTCTTAATCAGGTAAACAACATACTCACATGTTGTAAAACAAGTTAAGAACTAGTTCAAAGGTCGATACGCTACTTACCTGGTTTCGAATCCCTTTCTCTCTTGATTGTACATTTAATAGGGTATTTCAACACAATTCCTTCCAAGTAGACCTATATTTCACCATTTTCAAGGTAAGTATAGGTCAATCTAGGTAGAACAGGTCAAAACAAATCGAACGGGACAAACCGGGAACCGAACGGACGCTTCACGCGCCCTCACGCTCCCTCACGCGCCTCGGTGTGTCTGTCCCACGCGCCAGTCGCACGCCCAGTCGCGGCCCTCACGCGCCTGCGTGTAGTGCACGCGCTCGTCTTCAACCTCTCCTCCCTGCAATTTTTCCCAATCTTTTCCTTTAATACCCGTTGTGTCCCGAAGCAAAAATTTCATCTCTACAGCTCGAATTTCGTTCTGATTTCTTCTACAACTTTATAGATCTTCTAACCACGGTTCTAACCAGCCTTATTTCATAACTTATTATGCAGTATAACTCAAGATATCGAGATTTAAAGGTTCGGTGATGTGGGTTTTTTTCGTTACCTTCGAATTACCGTCCGCTTCAGCTCGGGGCCGTATCCTTTCCTCAAAAGATTCCTCAGCAACAACCCCTCTTCCTTTACCCTCGATTGATGTCCAATTTTAAGCAACCAAAAACTCGAATTCTCCACAAATTTCTTCCTCTGTTTACTGGGTTTCTCTCCATCTCCATTCTTCGTTTTTCTTCCCTTTTTAAAGCCTAATCAGGCTCTAATATGCTTCCACCTCCCCTAATCACCCTCTCATCCATCCCACGCCTCCAGCTACGCGTCCACCGCCCCTCAACCTCCTTTACAGCAGCTGCTTGACGCAGCTGCTTCGTTTCCGTCGTTCCTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTAATTAATTAATTAATTTATTTATTTATTTATTATTATTATTATTATTAAACACACAACACATACACACAAAATACATTTTATCATTATTTTGGGTTATTACATTTTCTTTTCTTCTTATTTTAGGGATATATTGGGAAATCCAATCACCCTTCATGATTCAAATACCGATCAATTATTCGAGTTAATATGATTTTTTCGAAACAAGAAAACATAGGCATGAAAATTACGAACAAACAAATAATTATTGGATGATTAATTTGTATGCAGTCATTGACCTCTAGTTGCAAACTTGCAAGGGAGAGTACGTGAATATTGATTCCAACAATGTGGACTGTTTACGACACTATAAAGCGTACCAAAAGATACGTAGGTTTCGTTAAACTTGAAACAATAAACTTGAAGCGTACCAAGTGATTATATTTGTTTTATTCTTCTTCATAGTGTTTCGAATATCGAGATAGGTTCAATTTTGTTGCCAAAATGTTCGTTTATTTCACCGAAACCACGAGAAGGTGGAGTTCACGAGAGATCGATATACGACACCTCCAGATTTTCCCTTGATCCTTAG

mRNA sequence

ATGGAAAATAAGCGTGGTTTATTGTTGTTAGATCTTCAGTTGCAAACTTGCAAGGGAGAGTACGTGAATATTGATTCCAACAATGTGGACTGTTTACGACACTATAAAGCGTACCAAAAGATACGTAGTGTTTCGAATATCGAGATAGGTTCAATTTTGTTGCCAAAATGTTCGTTTATTTCACCGAAACCACGAGAAGGTGGAGTTCACGAGAGATCGATATACGACACCTCCAGATTTTCCCTTGATCCTTAG

Coding sequence (CDS)

ATGGAAAATAAGCGTGGTTTATTGTTGTTAGATCTTCAGTTGCAAACTTGCAAGGGAGAGTACGTGAATATTGATTCCAACAATGTGGACTGTTTACGACACTATAAAGCGTACCAAAAGATACGTAGTGTTTCGAATATCGAGATAGGTTCAATTTTGTTGCCAAAATGTTCGTTTATTTCACCGAAACCACGAGAAGGTGGAGTTCACGAGAGATCGATATACGACACCTCCAGATTTTCCCTTGATCCTTAG
Homology
[Close]
BLAST of CmoCh09G002960 vs. TrEMBL
Match: V4SGT9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001059mg PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.0e-08
Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = 1 

Query: 16  TCKGEYVNIDSNNVDCLRHYKAYQKIRSVSNIEIGSILLPKCSFISPKPREGGVHERSIY 75
           TC G+Y NID +NVDCL   +A+ ++  +S ++   IL P+C F SPKPR+     RS+ 
Sbjct: 245 TCGGDYANIDPSNVDCLNDNQAFSEL--ISGLDQNHILEPRCPFFSPKPRDSNGKRRSLN 304

Query: 76  DT--SRFSLDP 85
           D   S+  LDP
Sbjct: 305 DNEKSQEFLDP 313

[Close]
BLAST of CmoCh09G002960 vs. TrEMBL
Match: A0A067GPA3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012236mg PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.0e-08
Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = 1 

Query: 16  TCKGEYVNIDSNNVDCLRHYKAYQKIRSVSNIEIGSILLPKCSFISPKPREGGVHERSIY 75
           TC G+Y NID +NVDCL   +A+ ++  +S ++   IL P+C F SPKPR+     RS+ 
Sbjct: 245 TCGGDYANIDPSNVDCLNDNQAFSEL--ISGLDQNHILEPRCPFFSPKPRDSNGKRRSLN 304

Query: 76  DT--SRFSLDP 85
           D   S+  LDP
Sbjct: 305 DNEKSQEFLDP 313

[Close]
BLAST of CmoCh09G002960 vs. TrEMBL
Match: A0A067GP12_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012276mg PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.0e-08
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 1 

Query: 16  TCKGEYVNIDSNNVDCLRHYKAYQKIRSVSNIEIGSILLPKCSFISPKPREGGVHERS-- 75
           TC GEYVN+D NN DCL   + + K+   S +E   IL P C F SPKPR    + RS  
Sbjct: 245 TCGGEYVNVDPNNKDCLNDIQTFSKL--TSGVEKSHILEPHCQFFSPKPRASSRNRRSLN 304

Query: 76  IYDTSRFSLDP 85
           + + S+  LDP
Sbjct: 305 VNEQSQEFLDP 313

[Close]
BLAST of CmoCh09G002960 vs. TrEMBL
Match: A0A067GP99_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012276mg PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.0e-08
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 1 

Query: 16  TCKGEYVNIDSNNVDCLRHYKAYQKIRSVSNIEIGSILLPKCSFISPKPREGGVHERS-- 75
           TC GEYVN+D NN DCL   + + K+   S +E   IL P C F SPKPR    + RS  
Sbjct: 245 TCGGEYVNVDPNNKDCLNDIQTFSKL--TSGVEKSHILEPHCQFFSPKPRASSRNRRSLN 304

Query: 76  IYDTSRFSLDP 85
           + + S+  LDP
Sbjct: 305 VNEQSQEFLDP 313

[Close]
BLAST of CmoCh09G002960 vs. TrEMBL
Match: V4T623_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001060mg PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.0e-07
Identity = 28/59 (47.46%), Postives = 35/59 (59.32%), Query Frame = 1 

Query: 16  TCKGEYVNIDSNNVDCLRHYKAYQKIRSVSNIEIGSILLPKCSFISPKPREGGVHERSI 75
           TC GEYVN+D NN DCL   + + K+   S +E   IL P C F SPKPR    + RS+
Sbjct: 245 TCGGEYVNVDPNNKDCLNDIQTFSKL--TSGVEKSHILEPHCQFFSPKPRASSHNRRSL 301

[Close]
BLAST of CmoCh09G002960 vs. TAIR10
Match: AT1G33540.1 (AT1G33540.1 serine carboxypeptidase-like 18)

HSP 1 Score: 47.8 bits (112), Expect = 3.9e-06
Identity = 25/63 (39.68%), Postives = 31/63 (49.21%), Query Frame = 1 

Query: 15  QTCKGEYVNIDSNNVDCLRHYKAYQKIRSVSNIEIGSILLPKCSFISPKPREGGVHERSI 74
           +TC+G YV +D  N  CL+  + Y K   VS I  G IL+  C   SP P  G    RS 
Sbjct: 246 RTCQGNYVKVDPTNTKCLKLMEDYGK--CVSRINEGLILIALCDLASPNPYSGEHGGRSY 305

Query: 75  YDT 78
             T
Sbjct: 306 LQT 306

[Close]
BLAST of CmoCh09G002960 vs. NCBI nr
Match: gi|659103635|ref|XP_008452662.1| (PREDICTED: serine carboxypeptidase-like 13 [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-14
Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 1 

Query: 9   LLDLQLQTCKGEYVNIDSNNVDCLRHYKAYQKIRSVSNIEIGSILLPKCSFISPKPREGG 68
           L +    +CKGEYVNID +NVDCLRHY  YQK   +S I   +ILLPKCSF SPK +E  
Sbjct: 237 LFESLTSSCKGEYVNIDPSNVDCLRHYNTYQK--CISKIHKANILLPKCSFHSPKRQEDA 296

Query: 69  VHE-RSIYDTSRFSLDP 85
           + + RS+Y+T +  LDP
Sbjct: 297 IFDGRSLYNTPKVLLDP 311

[Close]
BLAST of CmoCh09G002960 vs. NCBI nr
Match: gi|659103638|ref|XP_008452663.1| (PREDICTED: serine carboxypeptidase-like 13 [Cucumis melo])

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-13
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 1 

Query: 9   LLDLQLQTCKGEYVNIDSNNVDCLRHYKAYQKIRSVSNIEIGSILLPKCSFISPKPREGG 68
           L +  + +CKGEYVNID +NVD LRHY  YQ  + +S ++  +ILLPKCSF SPK +E  
Sbjct: 237 LFESLVSSCKGEYVNIDPSNVDYLRHYNTYQ--QCISKVQKANILLPKCSFHSPKRQEDA 296

Query: 69  VHE-RSIYDTSRFSLDP 85
           + E RS+Y+T +  LDP
Sbjct: 297 IFERRSLYNTPKVLLDP 311

[Close]
BLAST of CmoCh09G002960 vs. NCBI nr
Match: gi|659103640|ref|XP_008452664.1| (PREDICTED: serine carboxypeptidase-like 2 [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 4.0e-08
Identity = 31/76 (40.79%), Postives = 46/76 (60.53%), Query Frame = 1 

Query: 9   LLDLQLQTCKGEYVNIDSNNVDCLRHYKAYQKIRSVSNIEIGSILLPKCSFISPKPREGG 68
           L +    +CKGEY+NID +N +CLRHY  Y+K  ++S I IG IL   C   S KP+   
Sbjct: 263 LFESLTSSCKGEYMNIDPSNTECLRHYDTYEK--TISEINIGHILFRHCPPDSAKPQGFS 322

Query: 69  VHERSIYDTSRFSLDP 85
              RS+Y++++   +P
Sbjct: 323 RRRRSLYNSNQVLEEP 336

[Close]
BLAST of CmoCh09G002960 vs. NCBI nr
Match: gi|641862787|gb|KDO81474.1| (hypothetical protein CISIN_1g012236mg [Citrus sinensis])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = 1 

Query: 16  TCKGEYVNIDSNNVDCLRHYKAYQKIRSVSNIEIGSILLPKCSFISPKPREGGVHERSIY 75
           TC G+Y NID +NVDCL   +A+ ++  +S ++   IL P+C F SPKPR+     RS+ 
Sbjct: 245 TCGGDYANIDPSNVDCLNDNQAFSEL--ISGLDQNHILEPRCPFFSPKPRDSNGKRRSLN 304

Query: 76  DT--SRFSLDP 85
           D   S+  LDP
Sbjct: 305 DNEKSQEFLDP 313

[Close]
BLAST of CmoCh09G002960 vs. NCBI nr
Match: gi|567882189|ref|XP_006433653.1| (hypothetical protein CICLE_v10001059mg [Citrus clementina])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = 1 

Query: 16  TCKGEYVNIDSNNVDCLRHYKAYQKIRSVSNIEIGSILLPKCSFISPKPREGGVHERSIY 75
           TC G+Y NID +NVDCL   +A+ ++  +S ++   IL P+C F SPKPR+     RS+ 
Sbjct: 245 TCGGDYANIDPSNVDCLNDNQAFSEL--ISGLDQNHILEPRCPFFSPKPRDSNGKRRSLN 304

Query: 76  DT--SRFSLDP 85
           D   S+  LDP
Sbjct: 305 DNEKSQEFLDP 313

The following BLAST results are available for this feature:
BLAST of CmoCh09G002960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh09G002960 vs. TrEMBL
Match NameE-valueIdentityDescription
V4SGT9_9ROSI8.0e-0843.66Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001059mg PE=3 SV=1[more]
A0A067GPA3_CITSI8.0e-0843.66Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012236mg PE=3 SV=1[more]
A0A067GP12_CITSI8.0e-0845.07Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012276mg PE=3 SV=1[more]
A0A067GP99_CITSI8.0e-0845.07Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012276mg PE=3 SV=1[more]
V4T623_9ROSI4.0e-0747.46Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001060mg PE=3 SV=1[more]
BLAST of CmoCh09G002960 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G33540.13.9e-0639.68 serine carboxypeptidase-like 18[more]
BLAST of CmoCh09G002960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659103635|ref|XP_008452662.1|2.8e-1454.55PREDICTED: serine carboxypeptidase-like 13 [Cucumis melo][more]
gi|659103638|ref|XP_008452663.1|2.4e-1351.95PREDICTED: serine carboxypeptidase-like 13 [Cucumis melo][more]
gi|659103640|ref|XP_008452664.1|4.0e-0840.79PREDICTED: serine carboxypeptidase-like 2 [Cucumis melo][more]
gi|641862787|gb|KDO81474.1|1.2e-0743.66hypothetical protein CISIN_1g012236mg [Citrus sinensis][more]
gi|567882189|ref|XP_006433653.1|1.2e-0743.66hypothetical protein CICLE_v10001059mg [Citrus clementina][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G002960.1CmoCh09G002960.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh09G002960Cla97C05G108900Watermelon (97103) v2cmowmbB020
CmoCh09G002960Bhi09G002648Wax gourdcmowgoB0029
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh09G002960Watermelon (97103) v2cmowmbB001
CmoCh09G002960Watermelon (97103) v2cmowmbB023
CmoCh09G002960Wax gourdcmowgoB0005
CmoCh09G002960Wax gourdcmowgoB0015
CmoCh09G002960Cucurbita maxima (Rimu)cmacmoB435
CmoCh09G002960Cucurbita moschata (Rifu)cmocmoB033
CmoCh09G002960Cucurbita moschata (Rifu)cmocmoB004
CmoCh09G002960Cucurbita moschata (Rifu)cmocmoB017
CmoCh09G002960Cucurbita moschata (Rifu)cmocmoB028
CmoCh09G002960Cucurbita moschata (Rifu)cmocmoB037
CmoCh09G002960Cucumber (Gy14) v1cgycmoB0214
CmoCh09G002960Cucumber (Gy14) v1cgycmoB0961
CmoCh09G002960Cucumber (Gy14) v1cgycmoB1083
CmoCh09G002960Cucurbita maxima (Rimu)cmacmoB027
CmoCh09G002960Cucurbita maxima (Rimu)cmacmoB164
CmoCh09G002960Cucurbita maxima (Rimu)cmacmoB632
CmoCh09G002960Cucurbita maxima (Rimu)cmacmoB755
CmoCh09G002960Cucurbita maxima (Rimu)cmacmoB841
CmoCh09G002960Wild cucumber (PI 183967)cmocpiB002
CmoCh09G002960Wild cucumber (PI 183967)cmocpiB011
CmoCh09G002960Wild cucumber (PI 183967)cmocpiB024
CmoCh09G002960Cucumber (Chinese Long) v2cmocuB002
CmoCh09G002960Cucumber (Chinese Long) v2cmocuB011
CmoCh09G002960Cucumber (Chinese Long) v2cmocuB024
CmoCh09G002960Melon (DHL92) v3.5.1cmomeB012
CmoCh09G002960Melon (DHL92) v3.5.1cmomeB029
CmoCh09G002960Melon (DHL92) v3.5.1cmomeB037
CmoCh09G002960Watermelon (Charleston Gray)cmowcgB013
CmoCh09G002960Watermelon (Charleston Gray)cmowcgB023
CmoCh09G002960Watermelon (97103) v1cmowmB007
CmoCh09G002960Watermelon (97103) v1cmowmB024
CmoCh09G002960Watermelon (97103) v1cmowmB026
CmoCh09G002960Cucurbita pepo (Zucchini)cmocpeB006
CmoCh09G002960Cucurbita pepo (Zucchini)cmocpeB017
CmoCh09G002960Cucurbita pepo (Zucchini)cmocpeB020
CmoCh09G002960Cucurbita pepo (Zucchini)cmocpeB034
CmoCh09G002960Cucurbita pepo (Zucchini)cmocpeB038
CmoCh09G002960Bottle gourd (USVL1VR-Ls)cmolsiB004
CmoCh09G002960Bottle gourd (USVL1VR-Ls)cmolsiB012
CmoCh09G002960Bottle gourd (USVL1VR-Ls)cmolsiB020
CmoCh09G002960Cucumber (Gy14) v2cgybcmoB138
CmoCh09G002960Cucumber (Gy14) v2cgybcmoB433
CmoCh09G002960Cucumber (Gy14) v2cgybcmoB682
CmoCh09G002960Melon (DHL92) v3.6.1cmomedB012
CmoCh09G002960Melon (DHL92) v3.6.1cmomedB029
CmoCh09G002960Melon (DHL92) v3.6.1cmomedB036
CmoCh09G002960Silver-seed gourdcarcmoB0001
CmoCh09G002960Silver-seed gourdcarcmoB0255
CmoCh09G002960Silver-seed gourdcarcmoB0439
CmoCh09G002960Silver-seed gourdcarcmoB0542
CmoCh09G002960Silver-seed gourdcarcmoB0611
CmoCh09G002960Silver-seed gourdcarcmoB1040
CmoCh09G002960Cucumber (Chinese Long) v3cmocucB0004
CmoCh09G002960Cucumber (Chinese Long) v3cmocucB0015
CmoCh09G002960Cucumber (Chinese Long) v3cmocucB0026