CmoCh09G000050 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G000050
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	UPF0047 protein yjbQ
Location	Cmo_Chr09 : 11246 .. 17151 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGGCCTGTAGGGCTGTCCTTTCCACGTATCATAGGCGGTTGGGCTTTGCGGATGAGCGGTCGGTGAGTGTAGGTTCTGTGGGCTTTAGGTTGCAAAATAATGCAAGGCGCTGTTCTCTTGGCTGCGCAACCACTCCGCGTGAAGTTGCTGTGGAGCAACAATTCCAGTACGGGTAATCCGTCCGCCACCGCAGGCGCCGGCAATCCAAGCTTGATGGCGGCCGCTGGTCCGAAGTGGGCTCAGAAGACTGTTACGCTGCCTCCTCATAGGCGGGGCTGTCATCTCATCACCCCGAAGGTGATTAATTGGTTGTCGTCTCCCACCTTATCTAGAATCTTGTATTGGTCTTCTGGGGGTTTAAATGGTGCCTGTCCTCTACATAATTCAGTTTCACTTTTCCTAACAATAGACGAAAAATTATTCATTTATACCTTAGTATGCAATTTTTTCCTCATATTGCTGCTACTGAGTTTGATTTCTATATCAGATAATGAAGGAAATTGGGAAGGACTTGTCAGAATTCAAATGTGGCCTTGCTCACATCTTCTGTAAATCTTCTAATCTAGTTTATCTATTTTGGAGATTAATGTGTAGTTGGATTTCTTTGTGGAATCATTTGCTGATGTCTCAGTGCAGCATACGAGTGCCTCTCTTACCATCAATGAAAACTATGATTCGGATGTTCGGAGTGATACTGAAACCTTCCTCAACAATATAGTGCCTGAAGTTAGTTTGCTATCCGCCTCTATCATTTGCAACTCTCATTTATCGAAAGCTTTCCCATTTGACCCTTTGTTTCTCTCTCCCACTCTTTCATTTGGGGGTATGTTTGCAGGGTACATCTGCTCCTTGGAAGCATACACTTGAAGGTCATCAAAATTCCTTCTACTTTATTCTACTAAGAAGAATTTTCCTCTTTTTTAGTTAACTGATTTCATATACTGAAAAAGAAACTGTACTATAAAAAGGGCCCGGGATTTTGTCTCCGTCATAACATTGTAACACAATTTGAACTCTTGTAATGTGTAGGATGCTAATGAATCTGCTGACTGGCTACGAGGGAGGAGGGACTATGATAGATGTGTGGTAGTTTATGAAAAAACGTCGGAAAAATGTAAAATTGACCAACCAATGTTAAGAATATATAAAGAGGAAGTAGGCTGAAACAGAGTTTATGCGAAGTAATCTCATTTTAATTTGACGGGTTATCTTAGTAAAAGCTAACTCATTCCTGAGCCTTCAAAGTTCTATACTTCTATGCCGTCTAAAAATGATTGAAGGGGTAACTGACGAACTTATATGTATACTGGTTTGGATAAGAATAGGAAGCATAAAGATTTTTTTCAACAAAAAAAAAAGGATTCTTTGACCTGTTTGCTGGAAGTTACTGAATGAATCTTAGACTAATAAAACGACTATCAAAACGTATTATATACCACAAAAACTCTTTGTTGCATGCTTTTAGATTTAAATTTTCAAATAGAAATGCAAGTGCCTCAGCATCACATATAAAATTCATAAGAAATATAGGATTGGGGGAAGAGAGTGTTTGGAAAGCCTCTCTTTTTTCTAAAAACATTACTCTCTAGTTTATACTCAACTAAGATGGATCAGGGGAATATTGACAAAAAAAATTATTTTGTTCTTGTGCTCATTATGCAGGCCCGGATGACATGCCCGCGCACATTAAATCATCAATGTTTGGCTGTGCACTCACGTGGGTTATTCGACATTGTTTCTGGATTAAATGCCTAGTTGACCTGCTGTTCTCATTTGTGGTTATTCTTTTGTAGGGTTCCAATTACAAATGGAAAGTTTAATATGGGTACTTGGCAGGTACAGTTTAGTAGGTCTTTTTTTTTTAATTAATATTATTTTTATTATTATTAATTGTAGTTTTTCCGTTAAATAAAAAACTAACAATTTTTGTTAATAGTGAATATGGAAAAGAGTTCGTTATATTCCTTTGTTTGGTACACAATTTGTAATTTTGGTATGAGAATAAATCATTCCTTAGCATTCTTATATACTCATGAACAAGGGTAATCCATACCTTTCCGAAGTTTTGGGTTTTCAACTTTTCTCTCTGCCTATGATTAAACTTTTCGTCTCACTTAAAACTTCTCTTCTTACTTCTTCTGCTCTTCTTTTTTCTTCTTGTTTTATATATTTTCTTTTTGTTCGTGCATATTTGTTTATCTTATTTAGTTAGAACAAATTAATATGTTTAAGTTAATTTTTTTAATTGATAGGACTACTTGTGTTTGTTAGGTTGTTGATTCATAACCTTTACAGTAAATGAAAAGTAAGGCTCGTGTTTCAGATTTTTTTTTTTTTGTACTTGTTTTATCATTTTTGGTTCACTTTATGCTGTATCCTTTAAGGAAAAGTTTGGAAATGCATGGGAAAAGTACTTTAATGTTCAATCACCAGGTTAACTTAGTATCTGACGTTGTAATTGTAGATGGCTTTCGTGAGGTTAGCATGTCATTTAGAAAGAAGTTCTGTTCCTGATTAGGGTTAAGGAAATCCACTAGATTTATTGGTTCAAGTCATGATTGGAAATGGATATAAAGCCTCTACATGATTTCCCACCCTGATCAGATGAAACATAGCCTTGCCACTTTTGTACTTCGAATTAAAGTAATGCCAACTACCTGGATCTTCTTAGATCTCCACTCTTCAAACATGAATCTTTTTGGCCCTTTGAAACATGATTCAAATATTCATCCTTCATTCTTGCCTGTTGAAGCTCTATTTCTTTTTCCTCTTTTTAATTGGAGACAAATTTTCATTGATAATAAAAATTTCGTAAGAAAATGAACGAAAAAATCTTCAAAATGTCTTTTTCCCACCTGTACTTCGTGGTACATGTCTACCAAGAGTGCAACCAAAGCTTCAAAATGGCTTTTTCCTTAGAGGCTGCTACCTTCCTGTTAAGAACAAGAAATGTCCACGTAAAGCCTTCTTAAGATGACTGAAATTATGATAACAGTGGAAATTTAAAATCAATCTGGGATCAGTTTTCTCCCATCCATCCACTCAATCCAATTGAATACTTCTTCTAAATTGACACTTGTGGTCTTTTGTGTTTCTGCTTCAGTAAGATGATTCAACTAAAAAGATCATTCTATGTTGAACACTCAAGTGTCAGAATATTCCCTTGGGTGAATTGGCAACTCCAAATATTCTCCTGTAATGCAATAATTCCCGTTGAGAATGAGCTTGTTTGAGTCTCTTTGTTCTCTAATCAATGCAGGATTTGTTGCCACTTCATGTTGGTACTCACTTTGATGCCTCTTCTTCTATGTGCTTATTTCTTCAGCAATTTTGTCCATTCATTCAAGCAACATTGAAGTATTCTTCTCCATCTTAAGAATTTTATACGAATCCCGTAGACAAAGCTAAATCCTTCTTTCTTATTTCTTTCAAAACTGAATTGAATGTTCAAGAGAAATATTTATATAATTGAGAGATATTTTTGTAATCCCTTTAAACAGAGGTAATATTTAGGGATTGGTTTTAGGGATTTATTTATATGTATTATTACCTAATATCTAGGGCTAGCTAAATTTTATTTTATTTTTTTTTGGTCTTTTTTGTATTATAAAACGAACCTGTATCTCTTTGAAAATAAGTGAGCAAGATAGTTTATATTGCAACATGATATTAAAGCTTTTCTATTCTAGAAAATTTGATTAGAACCAAAACCCTAATACAATCGGTGAAACCTTCATCGTTGCCGACCATCCATCATGATCAAGTTTCTTCTGCAAACTACCTCAAACCCATCAAGCACTCAAAATCTAGGAGGGTTGCAATATTTCTAGTGCATGTAGATGACATATAGTCACTAAAGTACTTTCTTAGCATTGAAGTAGCGTACTCAGCTCAATGCATTTTCATATCACAAGAAGAAATATGTGATGGATTTATTGATGGAAACAAAGAAAAGCATAGGTGAACTTGCACCAACACTGATGGATCCACATTAGAAATTGGGAGAGTCAAAAAAAGAACCATTACAGAGAAATGTACCAGAGGTCAGTGGGAGGTTCATATATCTAGCTCACACTAGATTAGACATAGCATACTCCGTAAGTGTAATTATTCAATTCATTCATGATCTGCAAGAACCTTACCTTCAGGCGACATATAGAGTGTTAGGTTACTTGAAAGGAACTTCAAGAAAAGGAATTTTGTTCAAACGGAACTATTCCATTGCATTGGAAGATTGCACCGATGCTAACTATGTTGGATCATTTGTAGACCGAAGATTTACTATGGAGTATTGTACTTTTCTTGGAGTTAATTTGTTAACATGGAGGAGTAAAAAGCAAAATGTGGTGTCTAGATTATCTGTCGAATTAGAATTTCGAGCTATTGCACAAGGGTTTTTGTGAACTCTTATGGTTGAAGATGATCCTTGATGATTTACAATTTAAGGGAGAAGATCCAATGAAGTTGTACTGCGACAACAAATCAGCTATCCACATTGCACATAATCCTATCCAACATGGAGAAGGGGATAGTATGCATTAGTTATGTACCCCATAACTACAACTAACCGATATACTAACAAAAGGATAATATCTATTCCTCAGATTGAGGGAGAGTGTTGAAAGAATGACCTTGATTCAAGGAATATTTATGCATATTTTTAACTAAGGAAAATATTACCTAGTATCTAAGGATTGATTCTAGGGATTTATATGTATGTATTATTACCTAGCATAGCTAGATTTTGTGTGAAGTTGAAGAACTGACCGCATTTCCATTACTACCAGAGGAATATTATGAATCTTTCCAAAGTATTCATGAGGAGGTGGATTCTCCTTTACCCCCTAGTTTTCCTGCTTTTGTTCACTTTTCCACTTCTTTTAACTTGTAAGCAACTATCTTTTTTTTTTCTTTTTTCGTTTTTTCTTTTTTAATTAAATAGTAATAAAAATTATTTTAAAATAAAAGGCCAGCAACAACCAGGCATCTGATTGTTTCTAGCAAAAATATGATGGACTCCTCTCTTTCTCTCTCTTACATAGTTTTGTAATTAGCTGCTTATCCATTCCTTTATTGGCTTATCTTATGTGTTACCAGCAAAAACCAGCCATATGATGGACTCCCTCTCTCCCTCTCCCACTCTTACTTATGTACGGAGGGCTTATATTAAACCAAAACATCTGTAGTGTTGTTTAACTTGATTTGACTTTTCTTTATTACACCCAGTTGAATTAGCAATATTAAATTAGTGTTTGCATATTTCCGGTCTTTAATATAATTCTTTTTTATCATATTGAAACAAAGGTAATGCCTGATGGATCAGGATAAGTTATGACATGAAGTTTTAAGGATTGAAGTCTGTGTGTATGAAATTTTTCTGCATTTAGTAGAACTGAGAGATCAGATGGGGGAGGGTTGATGAATAGGTCTGAGGTTTGGGGGAGGGTTTCTATCCTTGGTTCAGTGTGTCGAATGGATTTATATACGGAATGCCACATGCTAGGACAGATGAAACTTTTAGTTTAAAATTTAATGGCTAATTTTGATTGGACTTTGGATGCTTCAGGGAATATGGCTATGTGAGCACCGAGACCACCCCACTGCACGCAATATTGTGGTCACCCTGAATGGAATTTAGGTGATGGTAAGAGTTGGAGCTTCTGCCTGCCCAACTATTTCCCCTGGTTGTATCAATGTCAATAATAAACTGGTCTCCTTGCCTTGGCAAAACTGAACTGTAGACTCGGAGTCTGGGGACCATGTGAAATCACCCCTTTTTTTTTCATTTTTTTTTTTTCATTTGAGATGGTTGTTAATGGTTTATCATTTAGTTATGCTTGTATATTGGTCAACTTTATTGGGAGAGATATATGATGAATATGAACCCATTAGCATTCCCCCNNNN

mRNA sequence

GCGGCCTGTAGGGCTGTCCTTTCCACGTATCATAGGCGGTTGGGCTTTGCGGATGAGCGGTCGGTGAGTGTAGGTTCTGTGGGCTTTAGGTTGCAAAATAATGCAAGGCGCTGTTCTCTTGGCTGCGCAACCACTCCGCGTGAAGTTGCTGTGGAGCAACAATTCCAGTACGGGTAATCCGTCCGCCACCGCAGGCGCCGGCAATCCAAGCTTGATGGCGGCCGCTGGTCCGAAGTGGGCTCAGAAGACTGTTACGCTGCCTCCTCATAGGCGGGGCTGTCATCTCATCACCCCGAAGATAATGAAGGAAATTGGGAAGGACTTGTCAGAATTCAAATGTGGCCTTGCTCACATCTTCTTGCAGCATACGAGTGCCTCTCTTACCATCAATGAAAACTATGATTCGGATGTTCGGAGTGATACTGAAACCTTCCTCAACAATATAGTGCCTGAAGGTACATCTGCTCCTTGGAAGCATACACTTGAAGTAAAAGCTAACTCATTCCTGAGCCTTCAAAGTTCTATACTTCTATGCCGTCTAAAAATGATTGAAGGGGCCCGGATGACATGCCCGCGCACATTAAATCATCAATGTTTGGCTGTGCACTCACGGTTCCAATTACAAATGGAAAGTTTAATATGGGTACTTGGCAGGGAATATGGCTATGTGAGCACCGAGACCACCCCACTGCACGCAATATTGTGGTCACCCTGAATGGAATTTAGGTGATGGTAAGAGTTGGAGCTTCTGCCTGCCCAACTATTTCCCCTGGTTGTATCAATGTCAATAATAAACTGGTCTCCTTGCCTTGGCAAAACTGAACTGTAGACTCGGAGTCTGGGGACCATGTGAAATCACCCCTTTTTTTTTCATTTTTTTTTTTTCATTTGAGATGGTTGTTAATGGTTTATCATTTAGTTATGCTTGTATATTGGTCAACTTTATTGGGAGAGATATATGATGAATATGAACCCATTAGCATTCCCCCNNNN

Coding sequence (CDS)

ATGCAAGGCGCTGTTCTCTTGGCTGCGCAACCACTCCGCGTGAAGTTGCTGTGGAGCAACAATTCCAGTACGGGTAATCCGTCCGCCACCGCAGGCGCCGGCAATCCAAGCTTGATGGCGGCCGCTGGTCCGAAGTGGGCTCAGAAGACTGTTACGCTGCCTCCTCATAGGCGGGGCTGTCATCTCATCACCCCGAAGATAATGAAGGAAATTGGGAAGGACTTGTCAGAATTCAAATGTGGCCTTGCTCACATCTTCTTGCAGCATACGAGTGCCTCTCTTACCATCAATGAAAACTATGATTCGGATGTTCGGAGTGATACTGAAACCTTCCTCAACAATATAGTGCCTGAAGGTACATCTGCTCCTTGGAAGCATACACTTGAAGTAAAAGCTAACTCATTCCTGAGCCTTCAAAGTTCTATACTTCTATGCCGTCTAAAAATGATTGAAGGGGCCCGGATGACATGCCCGCGCACATTAAATCATCAATGTTTGGCTGTGCACTCACGGTTCCAATTACAAATGGAAAGTTTAATATGGGTACTTGGCAGGGAATATGGCTATGTGAGCACCGAGACCACCCCACTGCACGCAATATTGTGGTCACCCTGA

Homology

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BLAST of CmoCh09G000050 vs. Swiss-Prot
Match: YJBQ_ECO57 (UPF0047 protein YjbQ OS=Escherichia coli O157:H7 GN=yjbQ PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-12
Identity = 41/98 (41.84%), Postives = 58/98 (59.18%), Query Frame = 1


Query: 46  WAQKTVTLPPHRRGCHLITPKIMKEIGKDLSEFKCGLAHIFLQHTSASLTINENYDSDVR 105
           W QKT+TL    RG HL+T +I+ ++  D+     GL H+ LQHTSASLT+NEN D  VR
Sbjct: 2   WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 61

Query: 106 SDTETFLNNIVPEGTSAPWKHTLEVKANSFLSLQSSIL 144
            D E F    VP+  +  ++H  E   +    ++SS+L
Sbjct: 62  HDMERFFLRTVPD--NGNYEHDYEGADDMPSHIKSSML 96

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BLAST of CmoCh09G000050 vs. Swiss-Prot
Match: YJBQ_ECOLI (UPF0047 protein YjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-12
Identity = 41/98 (41.84%), Postives = 58/98 (59.18%), Query Frame = 1


Query: 46  WAQKTVTLPPHRRGCHLITPKIMKEIGKDLSEFKCGLAHIFLQHTSASLTINENYDSDVR 105
           W QKT+TL    RG HL+T +I+ ++  D+     GL H+ LQHTSASLT+NEN D  VR
Sbjct: 2   WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 61

Query: 106 SDTETFLNNIVPEGTSAPWKHTLEVKANSFLSLQSSIL 144
            D E F    VP+  +  ++H  E   +    ++SS+L
Sbjct: 62  HDMERFFLRTVPD--NGNYEHDYEGADDMPSHIKSSML 96

[Close]

BLAST of CmoCh09G000050 vs. Swiss-Prot
Match: YE72_SCHPO (UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4A8.02c PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.8e-12
Identity = 45/127 (35.43%), Postives = 70/127 (55.12%), Query Frame = 1


Query: 48  QKTVTLPPHRRGCHLITPKIMKEIGKDLSEFKCGLAHIFLQHTSASLTINENYDSDVRSD 107
           Q+ +TL    +G ++IT  ++K++  +L  F  G  + F+QHTSA+LTINEN+D+D R+D
Sbjct: 5   QRIITLDRRSKGFYIITNDLVKKL-PELKSFSSGTVNFFIQHTSAALTINENWDADTRAD 64

Query: 108 TETFLNNIVPEGTSAPWKHTLEVKANSFLSLQSSILLCRLKMIEGARMTCPRTLNHQCLA 167
               L+ IVPE  SA ++HT E   +    ++SS++        G  +T P T     L 
Sbjct: 65  MNDILDKIVPE--SAGYRHTAEGLDDMPAHVKSSLI--------GPSLTVPITNGKLSLG 120

Query: 168 VHSRFQL 175
                QL
Sbjct: 125 TWQDIQL 120

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BLAST of CmoCh09G000050 vs. Swiss-Prot
Match: YJBQ_SALTI (UPF0047 protein YjbQ OS=Salmonella typhi GN=yjbQ PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 1


Query: 46  WAQKTVTLPPHRRGCHLITPKIMKEIGKDLSEFKCGLAHIFLQHTSASLTINENYDSDVR 105
           W Q+T+TL    RG HLIT +I  ++   L   + GL H+ L HTSASLT+NEN D  VR
Sbjct: 2   WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVR 61

Query: 106 SDTETFLNNIVPEGTSAPWKHTLEVKANSFLSLQSSIL 144
           +D E      VP+  +A ++H  E   +    ++SS+L
Sbjct: 62  ADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVL 96

[Close]

BLAST of CmoCh09G000050 vs. Swiss-Prot
Match: YJBQ_SALTY (UPF0047 protein YjbQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yjbQ PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 1


Query: 46  WAQKTVTLPPHRRGCHLITPKIMKEIGKDLSEFKCGLAHIFLQHTSASLTINENYDSDVR 105
           W Q+T+TL    RG HLIT +I  ++   L   + GL H+ L HTSASLT+NEN D  VR
Sbjct: 2   WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVR 61

Query: 106 SDTETFLNNIVPEGTSAPWKHTLEVKANSFLSLQSSIL 144
           +D E      VP+  +A ++H  E   +    ++SS+L
Sbjct: 62  ADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVL 96

[Close]

BLAST of CmoCh09G000050 vs. TrEMBL
Match: A0A0A0L4Q6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G665660 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.8e-62
Identity = 122/147 (82.99%), Postives = 132/147 (89.80%), Query Frame = 1


Query: 1   MQGAVLLAAQPLRVKLLWSNNSSTGNPSATAGAGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA++LAAQPLRVKLL SNNSSTGNPSATAG+ NPS MAAAGPKWAQKTVTL PHRRGC
Sbjct: 1   MQGAIILAAQPLRVKLLRSNNSSTGNPSATAGSSNPSFMAAAGPKWAQKTVTLSPHRRGC 60

Query: 61  HLITPKIMKEIGKDLSEFKCGLAHIFLQHTSASLTINENYDSDVRSDTETFLNNIVPEGT 120
           HLITPKIMKEIG+DLSEFKCGLAHIFLQHTSASLTINENYDSDV++DTETFLN IVPEGT
Sbjct: 61  HLITPKIMKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDSDVQNDTETFLNKIVPEGT 120

Query: 121 SAPWKHTLEVKANSFLSLQSSILLCRL 148
           SAPWKHTLE   +    ++SS+  C L
Sbjct: 121 SAPWKHTLEGPDDMPAHIKSSLFGCAL 147

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BLAST of CmoCh09G000050 vs. TrEMBL
Match: U5GNF8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s00360g PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 8.4e-51
Identity = 107/166 (64.46%), Postives = 117/166 (70.48%), Query Frame = 1


Query: 39  MAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGKDLSEFKCGLAHIFLQHTSASLTINE 98
           MA + PKWAQKT+TLPPHRRGCHLITPKI+ EIG DLSEFKCGLAH+FL HTSASLTINE
Sbjct: 39  MATSAPKWAQKTITLPPHRRGCHLITPKILNEIGSDLSEFKCGLAHLFLHHTSASLTINE 98

Query: 99  NYDSDVRSDTETFLNNIVPEGTSAPWKHTLEVKANSFLSLQSSILLCRLKMIEGARMTCP 158
           NYDSDVR DTETFLN IVPEG SAPWKHTLE   +    ++SS+  C L           
Sbjct: 99  NYDSDVRDDTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCSLTF--------- 158

Query: 159 RTLNHQCLAVHSRFQLQMESLIWVLGREYGYVSTETTPLHAILWSP 205
               + C    + FQ  MESLIW LGREYG VST TT L   LW P
Sbjct: 159 ----YSC----AGFQSLMESLIWALGREYGCVSTGTTLLRVKLWLP 187

[Close]

BLAST of CmoCh09G000050 vs. TrEMBL
Match: A0A059BRK5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01955 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 9.0e-45
Identity = 92/135 (68.15%), Postives = 108/135 (80.00%), Query Frame = 1


Query: 13  RVKLLWSNNSSTGNPSATAGAGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIG 72
           RV+ L++ N     P +TA   +P  MAA+GPKWAQKT+TLPP RRGCHL+TPKI+KEIG
Sbjct: 78  RVRALYTANP----PPSTAVGSDPGSMAASGPKWAQKTITLPPQRRGCHLVTPKILKEIG 137

Query: 73  KDLSEFKCGLAHIFLQHTSASLTINENYDSDVRSDTETFLNNIVPEGTSAPWKHTLEVKA 132
           +DLSEFKCGLAH+FLQHTSASLTINENYDSDVR DTETFLN IVPEG SAPWKHT+E   
Sbjct: 138 QDLSEFKCGLAHLFLQHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAPWKHTIEGPD 197

Query: 133 NSFLSLQSSILLCRL 148
           +    ++SS+  C L
Sbjct: 198 DMPAHIKSSMFGCTL 208

[Close]

BLAST of CmoCh09G000050 vs. TrEMBL
Match: A0A059BQY1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01955 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.5e-44
Identity = 89/120 (74.17%), Postives = 102/120 (85.00%), Query Frame = 1


Query: 13  RVKLLWSNNSSTGNPSATAGAGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIG 72
           RV+ L++ N     P +TA   +P  MAA+GPKWAQKT+TLPP RRGCHL+TPKI+KEIG
Sbjct: 78  RVRALYTANP----PPSTAVGSDPGSMAASGPKWAQKTITLPPQRRGCHLVTPKILKEIG 137

Query: 73  KDLSEFKCGLAHIFLQHTSASLTINENYDSDVRSDTETFLNNIVPEGTSAPWKHTLEVKA 132
           +DLSEFKCGLAH+FLQHTSASLTINENYDSDVR DTETFLN IVPEG SAPWKHT+E K+
Sbjct: 138 QDLSEFKCGLAHLFLQHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAPWKHTIEGKS 193

[Close]

BLAST of CmoCh09G000050 vs. TrEMBL
Match: M5WVQ0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012129mg PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.7e-43
Identity = 95/141 (67.38%), Postives = 109/141 (77.30%), Query Frame = 1


Query: 7   LAAQPLRVKLLWSNNSSTGNPSATAGAGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPK 66
           L+A P+RV       S    PS T    +P+ MAAAGPKWAQKT+TLPP RRGCHLITPK
Sbjct: 10  LSASPVRVVKC----SLVRAPSTTVN--DPNSMAAAGPKWAQKTITLPPQRRGCHLITPK 69

Query: 67  IMKEIGKDLSEFKCGLAHIFLQHTSASLTINENYDSDVRSDTETFLNNIVPEGTSAPWKH 126
           I+KEIG++LS+F CGLAH+FLQHTSASLTINENYDSDVR DTETFLN IVPEGTSAPWKH
Sbjct: 70  IVKEIGQELSDFNCGLAHLFLQHTSASLTINENYDSDVRDDTETFLNRIVPEGTSAPWKH 129

Query: 127 TLEVKANSFLSLQSSILLCRL 148
           TLE   +    ++SS+  C L
Sbjct: 130 TLEGPDDMPAHIKSSMFGCTL 144

[Close]

BLAST of CmoCh09G000050 vs. TAIR10
Match: AT1G21065.1 (AT1G21065.1 unknown protein)

HSP 1 Score: 164.9 bits (416), Expect = 5.4e-41
Identity = 77/119 (64.71%), Postives = 95/119 (79.83%), Query Frame = 1


Query: 29  ATAGAGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGKDLSEFKCGLAHIFLQ 88
           A       S+ +++G KWAQKT+TLPP RRGCHLITPKI+KEI +DLS+F CGLAH+FLQ
Sbjct: 61  ANPATDRASMASSSGAKWAQKTITLPPLRRGCHLITPKILKEIREDLSDFNCGLAHVFLQ 120

Query: 89  HTSASLTINENYDSDVRSDTETFLNNIVPEGTSAPWKHTLEVKANSFLSLQSSILLCRL 148
           HTSASLTINENYD DV++DTETFLN IVPEG SAPW+HT+E   +    ++SS+  C+L
Sbjct: 121 HTSASLTINENYDPDVQADTETFLNRIVPEGNSAPWRHTMEGPDDMPAHIKSSMFGCQL 179

[Close]

BLAST of CmoCh09G000050 vs. NCBI nr
Match: gi|659105236|ref|XP_008453044.1| (PREDICTED: UPF0047 protein C4A8.02c [Cucumis melo])

HSP 1 Score: 249.2 bits (635), Expect = 6.1e-63
Identity = 124/147 (84.35%), Postives = 133/147 (90.48%), Query Frame = 1


Query: 1   MQGAVLLAAQPLRVKLLWSNNSSTGNPSATAGAGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA++LAAQPLRVKLL SNNSSTGNPSATAG+ NPSLMAAAGPKWAQKTVTL PHRRGC
Sbjct: 1   MQGAIILAAQPLRVKLLRSNNSSTGNPSATAGSSNPSLMAAAGPKWAQKTVTLSPHRRGC 60

Query: 61  HLITPKIMKEIGKDLSEFKCGLAHIFLQHTSASLTINENYDSDVRSDTETFLNNIVPEGT 120
           HLITPKIMKEIG+DLSEFKCGLAHIFLQHTSASLTINENYDSDV+SDTETFLN IVPEGT
Sbjct: 61  HLITPKIMKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDSDVQSDTETFLNKIVPEGT 120

Query: 121 SAPWKHTLEVKANSFLSLQSSILLCRL 148
           SAPWKHTLE   +    ++SS+  C L
Sbjct: 121 SAPWKHTLEGPDDMPAHIKSSLFGCAL 147

[Close]

BLAST of CmoCh09G000050 vs. NCBI nr
Match: gi|449455657|ref|XP_004145568.1| (PREDICTED: UPF0047 protein C4A8.02c [Cucumis sativus])

HSP 1 Score: 246.5 bits (628), Expect = 4.0e-62
Identity = 122/147 (82.99%), Postives = 132/147 (89.80%), Query Frame = 1


Query: 1   MQGAVLLAAQPLRVKLLWSNNSSTGNPSATAGAGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA++LAAQPLRVKLL SNNSSTGNPSATAG+ NPS MAAAGPKWAQKTVTL PHRRGC
Sbjct: 1   MQGAIILAAQPLRVKLLRSNNSSTGNPSATAGSSNPSFMAAAGPKWAQKTVTLSPHRRGC 60

Query: 61  HLITPKIMKEIGKDLSEFKCGLAHIFLQHTSASLTINENYDSDVRSDTETFLNNIVPEGT 120
           HLITPKIMKEIG+DLSEFKCGLAHIFLQHTSASLTINENYDSDV++DTETFLN IVPEGT
Sbjct: 61  HLITPKIMKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDSDVQNDTETFLNKIVPEGT 120

Query: 121 SAPWKHTLEVKANSFLSLQSSILLCRL 148
           SAPWKHTLE   +    ++SS+  C L
Sbjct: 121 SAPWKHTLEGPDDMPAHIKSSLFGCAL 147

[Close]

BLAST of CmoCh09G000050 vs. NCBI nr
Match: gi|700200404|gb|KGN55562.1| (hypothetical protein Csa_4G665660 [Cucumis sativus])

HSP 1 Score: 246.5 bits (628), Expect = 4.0e-62
Identity = 122/147 (82.99%), Postives = 132/147 (89.80%), Query Frame = 1


Query: 1   MQGAVLLAAQPLRVKLLWSNNSSTGNPSATAGAGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA++LAAQPLRVKLL SNNSSTGNPSATAG+ NPS MAAAGPKWAQKTVTL PHRRGC
Sbjct: 1   MQGAIILAAQPLRVKLLRSNNSSTGNPSATAGSSNPSFMAAAGPKWAQKTVTLSPHRRGC 60

Query: 61  HLITPKIMKEIGKDLSEFKCGLAHIFLQHTSASLTINENYDSDVRSDTETFLNNIVPEGT 120
           HLITPKIMKEIG+DLSEFKCGLAHIFLQHTSASLTINENYDSDV++DTETFLN IVPEGT
Sbjct: 61  HLITPKIMKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDSDVQNDTETFLNKIVPEGT 120

Query: 121 SAPWKHTLEVKANSFLSLQSSILLCRL 148
           SAPWKHTLE   +    ++SS+  C L
Sbjct: 121 SAPWKHTLEGPDDMPAHIKSSLFGCAL 147

[Close]

BLAST of CmoCh09G000050 vs. NCBI nr
Match: gi|566155488|ref|XP_006386119.1| (hypothetical protein POPTR_0002s00360g [Populus trichocarpa])

HSP 1 Score: 208.4 bits (529), Expect = 1.2e-50
Identity = 107/166 (64.46%), Postives = 117/166 (70.48%), Query Frame = 1


Query: 39  MAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGKDLSEFKCGLAHIFLQHTSASLTINE 98
           MA + PKWAQKT+TLPPHRRGCHLITPKI+ EIG DLSEFKCGLAH+FL HTSASLTINE
Sbjct: 39  MATSAPKWAQKTITLPPHRRGCHLITPKILNEIGSDLSEFKCGLAHLFLHHTSASLTINE 98

Query: 99  NYDSDVRSDTETFLNNIVPEGTSAPWKHTLEVKANSFLSLQSSILLCRLKMIEGARMTCP 158
           NYDSDVR DTETFLN IVPEG SAPWKHTLE   +    ++SS+  C L           
Sbjct: 99  NYDSDVRDDTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCSLTF--------- 158

Query: 159 RTLNHQCLAVHSRFQLQMESLIWVLGREYGYVSTETTPLHAILWSP 205
               + C    + FQ  MESLIW LGREYG VST TT L   LW P
Sbjct: 159 ----YSC----AGFQSLMESLIWALGREYGCVSTGTTLLRVKLWLP 187

[Close]

BLAST of CmoCh09G000050 vs. NCBI nr
Match: gi|702369481|ref|XP_010061347.1| (PREDICTED: UPF0047 protein C4A8.02c [Eucalyptus grandis])

HSP 1 Score: 188.3 bits (477), Expect = 1.3e-44
Identity = 92/135 (68.15%), Postives = 108/135 (80.00%), Query Frame = 1


Query: 13  RVKLLWSNNSSTGNPSATAGAGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIG 72
           RV+ L++ N     P +TA   +P  MAA+GPKWAQKT+TLPP RRGCHL+TPKI+KEIG
Sbjct: 78  RVRALYTANP----PPSTAVGSDPGSMAASGPKWAQKTITLPPQRRGCHLVTPKILKEIG 137

Query: 73  KDLSEFKCGLAHIFLQHTSASLTINENYDSDVRSDTETFLNNIVPEGTSAPWKHTLEVKA 132
           +DLSEFKCGLAH+FLQHTSASLTINENYDSDVR DTETFLN IVPEG SAPWKHT+E   
Sbjct: 138 QDLSEFKCGLAHLFLQHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAPWKHTIEGPD 197

Query: 133 NSFLSLQSSILLCRL 148
           +    ++SS+  C L
Sbjct: 198 DMPAHIKSSMFGCTL 208

The following BLAST results are available for this feature:

BLAST of CmoCh09G000050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YJBQ_ECO57	1.7e-12	41.84	UPF0047 protein YjbQ OS=Escherichia coli O157:H7 GN=yjbQ PE=3 SV=1	[more]
YJBQ_ECOLI	1.7e-12	41.84	UPF0047 protein YjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3 SV=1	[more]
YE72_SCHPO	3.8e-12	35.43	UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...	[more]
YJBQ_SALTI	1.2e-10	40.82	UPF0047 protein YjbQ OS=Salmonella typhi GN=yjbQ PE=3 SV=1	[more]
YJBQ_SALTY	1.2e-10	40.82	UPF0047 protein YjbQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700...	[more]

BLAST of CmoCh09G000050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Q6_CUCSA	2.8e-62	82.99	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G665660 PE=4 SV=1	[more]
U5GNF8_POPTR	8.4e-51	64.46	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s00360g PE=4 SV=1	[more]
A0A059BRK5_EUCGR	9.0e-45	68.15	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01955 PE=4 SV=1	[more]
A0A059BQY1_EUCGR	1.5e-44	74.17	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01955 PE=4 SV=1	[more]
M5WVQ0_PRUPE	1.7e-43	67.38	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012129mg PE=4 SV=1	[more]

BLAST of CmoCh09G000050 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G21065.1	5.4e-41	64.71	unknown protein	[more]

BLAST of CmoCh09G000050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659105236\|ref\|XP_008453044.1\|	6.1e-63	84.35	PREDICTED: UPF0047 protein C4A8.02c [Cucumis melo]	[more]
gi\|449455657\|ref\|XP_004145568.1\|	4.0e-62	82.99	PREDICTED: UPF0047 protein C4A8.02c [Cucumis sativus]	[more]
gi\|700200404\|gb\|KGN55562.1\|	4.0e-62	82.99	hypothetical protein Csa_4G665660 [Cucumis sativus]	[more]
gi\|566155488\|ref\|XP_006386119.1\|	1.2e-50	64.46	hypothetical protein POPTR_0002s00360g [Populus trichocarpa]	[more]
gi\|702369481\|ref\|XP_010061347.1\|	1.3e-44	68.15	PREDICTED: UPF0047 protein C4A8.02c [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001602	UPF0047

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009521	photosystem
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G000050.1	CmoCh09G000050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001602	Uncharacterised protein family UPF0047	GENE3D	G3DSA:2.60.120.460		coord: 44..147 score: 4.3
IPR001602	Uncharacterised protein family UPF0047	PFAM	PF01894	UPF0047	coord: 63..144 score: 2.4
IPR001602	Uncharacterised protein family UPF0047	unknown	SSF111038	YjbQ-like	coord: 46..136 score: 4.06
None	No IPR available	PANTHER	PTHR30615	UNCHARACTERIZED PROTEIN YJBQ-RELATED	coord: 37..129 score: 1.8
None	No IPR available	PANTHER	PTHR30615:SF1	SUBFAMILY NOT NAMED	coord: 37..129 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh09G000050	CmaCh09G000040	Cucurbita maxima (Rimu)	cmacmoB027
CmoCh09G000050	Cla000526	Watermelon (97103) v1	cmowmB000
CmoCh09G000050	Csa4G665660	Cucumber (Chinese Long) v2	cmocuB015
CmoCh09G000050	MELO3C017079	Melon (DHL92) v3.5.1	cmomeB026
CmoCh09G000050	ClCG11G019260	Watermelon (Charleston Gray)	cmowcgB010
CmoCh09G000050	CSPI04G27480	Wild cucumber (PI 183967)	cmocpiB016
CmoCh09G000050	Cp4.1LG00g03960	Cucurbita pepo (Zucchini)	cmocpeB001
CmoCh09G000050	MELO3C017079.2	Melon (DHL92) v3.6.1	cmomedB026
CmoCh09G000050	CsaV3_4G037850	Cucumber (Chinese Long) v3	cmocucB0020
CmoCh09G000050	Cla97C11G225390	Watermelon (97103) v2	cmowmbB010
CmoCh09G000050	Bhi09G002332	Wax gourd	cmowgoB0023
CmoCh09G000050	CsGy4G025760	Cucumber (Gy14) v2	cgybcmoB438
CmoCh09G000050	Carg08587	Silver-seed gourd	carcmoB0144

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G000050	Silver-seed gourd	carcmoB0484
CmoCh09G000050	Wax gourd	cmowgoB0035
CmoCh09G000050	Cucurbita maxima (Rimu)	cmacmoB435
CmoCh09G000050	Cucurbita moschata (Rifu)	cmocmoB017
CmoCh09G000050	Cucurbita pepo (Zucchini)	cmocpeB020