CmoCh08G012300 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G012300
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(MYB transcription factor) (Myb domain protein 111) (Similarity to myb-related transcription factor)
Location	Cmo_Chr08 : 7793752 .. 7794405 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACTGTTCTTGTAGGTGGTCTCTTATTGCTGGAAATTTACCTGGGCGAACAGATAACGAAATAAAAAACTACTGGAATTCTCGTTTGAGTAAGAAAATTTACAGTACCACCGCCAAAAAAGATGCTCCTGAAAGCGCCGATCTTTCAAAGAGAAGCAACCGAGGCCGACCAAAAAAATCAGCCGTACTAAAAAAGAACAAGAAACAAACTACCCCACTTGAAAGTTCCCAATCTAATTCCATAGCAAAAGTAGCACTTCACGACGCGGGAAGCAATTCTCGATTGGAAGGTGCGGAGAAGGAACCAATTAAAAGCGATGAGGAGGAAAAGAAAGAAACCAGTAACACAGCTATGAAGGATCCGAAAGTAGAGGAAAAGGAAACTTGGGAACTGGGATCAAATGAATTGATCGATGAAACAATAAAAGGTATCGACGAGAGAGAAAATAGTGTTTGGAGTTCAAATATAGAGAGCGAGGAGTTGTACTACTCTTCTTCTGCGTGGGCTTCATCAATCAATTCCAATTTCAACAGTGAATGGCTCAATTGGAACTGGGAAGATGACGGGGGGGTCTTAGGCCAGAATTTCAAAGAACCATCATCTTGGTTTTATTGGGCGAATACCAATGGGAAAGGAGAAGAATGTCTTTGA

mRNA sequence

ATGTACTGTTCTTGTAGGTGGTCTCTTATTGCTGGAAATTTACCTGGGCGAACAGATAACGAAATAAAAAACTACTGGAATTCTCGTTTGAGTAAGAAAATTTACAGTACCACCGCCAAAAAAGATGCTCCTGAAAGCGCCGATCTTTCAAAGAGAAGCAACCGAGGCCGACCAAAAAAATCAGCCGTACTAAAAAAGAACAAGAAACAAACTACCCCACTTGAAAGTTCCCAATCTAATTCCATAGCAAAAGTAGCACTTCACGACGCGGGAAGCAATTCTCGATTGGAAGGTGCGGAGAAGGAACCAATTAAAAGCGATGAGGAGGAAAAGAAAGAAACCAGTAACACAGCTATGAAGGATCCGAAAGTAGAGGAAAAGGAAACTTGGGAACTGGGATCAAATGAATTGATCGATGAAACAATAAAAGGTATCGACGAGAGAGAAAATAGTGTTTGGAGTTCAAATATAGAGAGCGAGGAGTTGTACTACTCTTCTTCTGCGTGGGCTTCATCAATCAATTCCAATTTCAACAGTGAATGGCTCAATTGGAACTGGGAAGATGACGGGGGGGTCTTAGGCCAGAATTTCAAAGAACCATCATCTTGGTTTTATTGGGCGAATACCAATGGGAAAGGAGAAGAATGTCTTTGA

Coding sequence (CDS)

ATGTACTGTTCTTGTAGGTGGTCTCTTATTGCTGGAAATTTACCTGGGCGAACAGATAACGAAATAAAAAACTACTGGAATTCTCGTTTGAGTAAGAAAATTTACAGTACCACCGCCAAAAAAGATGCTCCTGAAAGCGCCGATCTTTCAAAGAGAAGCAACCGAGGCCGACCAAAAAAATCAGCCGTACTAAAAAAGAACAAGAAACAAACTACCCCACTTGAAAGTTCCCAATCTAATTCCATAGCAAAAGTAGCACTTCACGACGCGGGAAGCAATTCTCGATTGGAAGGTGCGGAGAAGGAACCAATTAAAAGCGATGAGGAGGAAAAGAAAGAAACCAGTAACACAGCTATGAAGGATCCGAAAGTAGAGGAAAAGGAAACTTGGGAACTGGGATCAAATGAATTGATCGATGAAACAATAAAAGGTATCGACGAGAGAGAAAATAGTGTTTGGAGTTCAAATATAGAGAGCGAGGAGTTGTACTACTCTTCTTCTGCGTGGGCTTCATCAATCAATTCCAATTTCAACAGTGAATGGCTCAATTGGAACTGGGAAGATGACGGGGGGGTCTTAGGCCAGAATTTCAAAGAACCATCATCTTGGTTTTATTGGGCGAATACCAATGGGAAAGGAGAAGAATGTCTTTGA

Homology

[Close]

BLAST of CmoCh08G012300 vs. Swiss-Prot
Match: MYB82_ARATH (Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.5e-08
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 1


Query: 6   RWSLIAGNLPGRTDNEIKNYWNSRLSKKIYSTTAKKDAPES 47
           RWSLIAG LPGRTDNE+KNYWN+ L+KK    + +++APES
Sbjct: 88  RWSLIAGRLPGRTDNEVKNYWNTHLNKK--PNSRRQNAPES 126

[Close]

BLAST of CmoCh08G012300 vs. Swiss-Prot
Match: TT2_ARATH (Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-07
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1


Query: 6   RWSLIAGNLPGRTDNEIKNYWNSRLSKKIYSTTAKK 42
           RWSLIAG LPGRTDNEIKN+WNS L K++  T  K+
Sbjct: 90  RWSLIAGRLPGRTDNEIKNHWNSNLRKRLPKTQTKQ 125

[Close]

BLAST of CmoCh08G012300 vs. Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.3e-07
Identity = 35/71 (49.30%), Postives = 44/71 (61.97%), Query Frame = 1


Query: 6   RWSLIAGNLPGRTDNEIKNYWNSRLSKKIYS-----TTAKKDAPESADLSK-------RS 63
           RWSLIA +LPGRTDNEIKNYWNS LS++I++     T    D   + D+SK       R 
Sbjct: 88  RWSLIASHLPGRTDNEIKNYWNSHLSRQIHTYRRKYTAGPDDTAIAIDMSKLQSADRRRG 147

[Close]

BLAST of CmoCh08G012300 vs. Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.0e-07
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 1


Query: 6   RWSLIAGNLPGRTDNEIKNYWNSRLSKKI 35
           RWSLIAG +PGRTDNEIKNYWN+ L KK+
Sbjct: 99  RWSLIAGRIPGRTDNEIKNYWNTHLRKKL 127

[Close]

BLAST of CmoCh08G012300 vs. Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.1e-07
Identity = 22/31 (70.97%), Postives = 27/31 (87.10%), Query Frame = 1


Query: 6   RWSLIAGNLPGRTDNEIKNYWNSRLSKKIYS 37
           +WSLIAG LPGRTDNEIKNYWN+ + +K+ S
Sbjct: 88  KWSLIAGRLPGRTDNEIKNYWNTHIKRKLLS 118

[Close]

BLAST of CmoCh08G012300 vs. TrEMBL
Match: M5XBH2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007594mg PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 85/282 (30.14%), Postives = 123/282 (43.62%), Query Frame = 1


Query: 6   RWSLIAGNLPGRTDNEIKNYWNSRLSKKIYS----------TTAKKDAPESADLSKRSNR 65
           RWS IA +LPGRTDNEIKNYWNS LS+KIY+          T        +A    R   
Sbjct: 88  RWSFIAAHLPGRTDNEIKNYWNSHLSRKIYTFTNLGNDYLPTITNVGKKTAASFKDRRAA 147

Query: 66  GRPKKSAVLKKNK---------KQTTPLESSQSNSIAKVALHDAG-SNSRLEGAEKEPIK 125
            R  +S+++ KNK          Q  P +S++ N     A+   G   S L+  E+  + 
Sbjct: 148 ARANRSSIMNKNKNVLAPSPQRSQAKPQQSARENQKGDEAIRMLGLKGSCLDSTERINLD 207

Query: 126 --SDEEEKKE---------TSNTAMKDPKVEEKETWELGSNELIDETIKGI--------- 185
              D++E  E         TS+T +      EKE   LG  E ++  I+G+         
Sbjct: 208 HCGDQKEGAELCLGNKVNITSSTVLSGDNNGEKEV--LGLCECVESEIRGLESGVVDPSG 267

Query: 186 -----DEREN---------------------SVWSSNIE--SEELYYSSSAWASSINSNF 214
                ++RE+                     S+WSSN E  S ELY    +++SS+NS F
Sbjct: 268 NVGFKEQREDGIIMEGSITDEVTKSEGRKSTSLWSSNAESGSGELY----SFSSSMNSTF 327

[Close]

BLAST of CmoCh08G012300 vs. TrEMBL
Match: A0A068UNG5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00030516001 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.9e-08
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 1


Query: 6   RWSLIAGNLPGRTDNEIKNYWNSRLSKKIYST 38
           RWSLIAG LPGRTDNEIKNYWNS LSKKIYST
Sbjct: 908 RWSLIAGRLPGRTDNEIKNYWNSHLSKKIYST 939

[Close]

BLAST of CmoCh08G012300 vs. TrEMBL
Match: B9GYD5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s07680g PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.2e-08
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 1


Query: 6   RWSLIAGNLPGRTDNEIKNYWNSRLSKKIYSTTAKKDAPE 46
           RWSLIAG LPGRTDNEIKNYWNS LSKKI   T K+  P+
Sbjct: 92  RWSLIAGRLPGRTDNEIKNYWNSHLSKKIIDQTQKEKMPD 131

[Close]

BLAST of CmoCh08G012300 vs. TrEMBL
Match: A0A0B2QHJ4_GLYSO (Transcription factor MYB12 OS=Glycine soja GN=glysoja_041579 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.1e-08
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 1


Query: 6   RWSLIAGNLPGRTDNEIKNYWNSRLSKKIY----STTAKKDAPESADLSKRSNRGRPKKS 65
           RWSLIA +LPGRTDNEIKNYWNS LS+KIY    +T++ KD      L  R  RGR  + 
Sbjct: 88  RWSLIASHLPGRTDNEIKNYWNSHLSRKIYTFHGTTSSSKDI--IITLPPRRKRGRSSRW 147

Query: 66  AVLKKNKKQTTPLESSQSNSIA 84
           A +KKNK+Q   + ++ +N +A
Sbjct: 148 A-MKKNKQQ--QIHTTHNNEVA 164

[Close]

BLAST of CmoCh08G012300 vs. TrEMBL
Match: B9RYQ9_RICCO (R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_1312710 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.3e-08
Identity = 38/63 (60.32%), Postives = 43/63 (68.25%), Query Frame = 1


Query: 6   RWSLIAGNLPGRTDNEIKNYWNSRLSKKIYSTTAKKDAPESADLSKRSNRGRPKKSAVLK 65
           RWSLIAG LPGRTDNEIKNYWNS LSK++ ST+       SA   K S RG P+K   L+
Sbjct: 88  RWSLIAGRLPGRTDNEIKNYWNSHLSKRLDSTS-------SATKMKCSTRG-PRKRITLQ 142

Query: 66  KNK 69
            NK
Sbjct: 148 SNK 142

[Close]

BLAST of CmoCh08G012300 vs. TAIR10
Match: AT5G52600.1 (AT5G52600.1 myb domain protein 82)

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-09
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 1


Query: 6   RWSLIAGNLPGRTDNEIKNYWNSRLSKKIYSTTAKKDAPES 47
           RWSLIAG LPGRTDNE+KNYWN+ L+KK    + +++APES
Sbjct: 88  RWSLIAGRLPGRTDNEVKNYWNTHLNKK--PNSRRQNAPES 126

[Close]

BLAST of CmoCh08G012300 vs. TAIR10
Match: AT5G35550.1 (AT5G35550.1 Duplicated homeodomain-like superfamily protein)

HSP 1 Score: 58.2 bits (139), Expect = 7.5e-09
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1


Query: 6   RWSLIAGNLPGRTDNEIKNYWNSRLSKKIYSTTAKK 42
           RWSLIAG LPGRTDNEIKN+WNS L K++  T  K+
Sbjct: 90  RWSLIAGRLPGRTDNEIKNHWNSNLRKRLPKTQTKQ 125

[Close]

BLAST of CmoCh08G012300 vs. TAIR10
Match: AT3G13540.1 (AT3G13540.1 myb domain protein 5)

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-08
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 1


Query: 6   RWSLIAGNLPGRTDNEIKNYWNSRLSKKI 35
           RWSLIAG +PGRTDNEIKNYWN+ L KK+
Sbjct: 99  RWSLIAGRIPGRTDNEIKNYWNTHLRKKL 127

[Close]

BLAST of CmoCh08G012300 vs. TAIR10
Match: AT5G16770.1 (AT5G16770.1 myb domain protein 9)

HSP 1 Score: 56.6 bits (135), Expect = 2.2e-08
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 1


Query: 6   RWSLIAGNLPGRTDNEIKNYWNSRLSKKI 35
           +WS IAGNLPGRTDNEIKNYWN+ L KK+
Sbjct: 88  KWSSIAGNLPGRTDNEIKNYWNTHLRKKL 116

[Close]

BLAST of CmoCh08G012300 vs. TAIR10
Match: AT4G09460.1 (AT4G09460.1 myb domain protein 6)

HSP 1 Score: 56.2 bits (134), Expect = 2.9e-08
Identity = 22/31 (70.97%), Postives = 27/31 (87.10%), Query Frame = 1


Query: 6   RWSLIAGNLPGRTDNEIKNYWNSRLSKKIYS 37
           +WSLIAG LPGRTDNEIKNYWN+ + +K+ S
Sbjct: 88  KWSLIAGRLPGRTDNEIKNYWNTHIKRKLLS 118

[Close]

BLAST of CmoCh08G012300 vs. NCBI nr
Match: gi|659117020|ref|XP_008458382.1| (PREDICTED: myb-related protein Myb4-like [Cucumis melo])

HSP 1 Score: 171.0 bits (432), Expect = 2.3e-39
Identity = 113/222 (50.90%), Postives = 143/222 (64.41%), Query Frame = 1


Query: 6   RWSLIAGNLPGRTDNEIKNYWNSRLSKKIYSTTAKKDAPESADLSKRSNRGRPKKSAVLK 65
           RWSLIAG+LPGRTDNEIKNYWNS LSKKIYS T KKD+P+ + + KR      +++ + K
Sbjct: 88  RWSLIAGHLPGRTDNEIKNYWNSHLSKKIYSDT-KKDSPQESTIPKRGRPNNKQQTIIAK 147

Query: 66  KNKKQTTPLESS-QSNSIAKVALHDAGSN-----SRLEGAEKEPIKSDEEEKKETSNTAM 125
           KNKK+T P E S QSNSI +   ++         +    +EKEP ++D   KK+ +N+  
Sbjct: 148 KNKKKTIPNEESCQSNSIPETTNNNKPKEQEEHATTSSSSEKEPNRNDHNNKKKNNNSTT 207

Query: 126 KDPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSSSAWASSINSNFNS 185
           KDPK+EE E WE         T    ++ EN V S+ IES E +YSS  W S   SNFN+
Sbjct: 208 KDPKIEE-EHWEF--------TTDDGEKVENEVISTIIESGEWFYSS--WPS---SNFNN 267

Query: 186 EWLNWNWEDDGGVLGQNFKEPSSWFYWA------NTNGKGEE 216
           EW+NW+WE D GVLGQN +EPSSWF WA      NTNG+GEE
Sbjct: 268 EWMNWDWESD-GVLGQNVQEPSSWF-WANNNNDNNTNGEGEE 292

[Close]

BLAST of CmoCh08G012300 vs. NCBI nr
Match: gi|449464726|ref|XP_004150080.1| (PREDICTED: transcription repressor MYB6 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 7.5e-35
Identity = 115/225 (51.11%), Postives = 136/225 (60.44%), Query Frame = 1


Query: 6   RWSLIAGNLPGRTDNEIKNYWNSRLSKKIYSTTAKKDAPESADLSKRSNRGRPKKSAVLK 65
           RWSLIAG+LPGRTDNEIKNYWNS LSKKIYS T KKD+P+    SKR      +++ + K
Sbjct: 88  RWSLIAGHLPGRTDNEIKNYWNSHLSKKIYSDT-KKDSPQKPTTSKRGRPNNKQQTVIAK 147

Query: 66  KNKKQTTPLESS-QSNSIAKVALHDAGSNSRLEGA------EKEPIKSDEEEKKETSNTA 125
           K KK+T P E S QSNSI +    +       E A      EKEP K+D   K    N+ 
Sbjct: 148 KKKKKTIPSEESCQSNSIPETTTTNKPKEEEEEHATTSSSSEKEPSKNDHNNK----NST 207

Query: 126 MKDPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSSSAWASSINSNFN 185
            KDPK+EE E W        D T    ++ E  V S+ IES E +Y  SAW S   SNFN
Sbjct: 208 TKDPKIEE-EHW--------DFTTDDGEKLEKEVISTIIESGEWFY--SAWPS---SNFN 267

Query: 186 SEWLNWNWEDDGGVLGQNFKE-PSSWFYWA------NTNGKGEEC 217
           +EW+NW+WE D GVLGQN +E PSSWF WA      NTNG GEEC
Sbjct: 268 NEWMNWDWESD-GVLGQNVQEQPSSWF-WANNSNDNNTNG-GEEC 290

[Close]

BLAST of CmoCh08G012300 vs. NCBI nr
Match: gi|596128256|ref|XP_007222090.1| (hypothetical protein PRUPE_ppa007594mg [Prunus persica])

HSP 1 Score: 74.7 bits (182), Expect = 2.2e-10
Identity = 85/282 (30.14%), Postives = 123/282 (43.62%), Query Frame = 1


Query: 6   RWSLIAGNLPGRTDNEIKNYWNSRLSKKIYS----------TTAKKDAPESADLSKRSNR 65
           RWS IA +LPGRTDNEIKNYWNS LS+KIY+          T        +A    R   
Sbjct: 88  RWSFIAAHLPGRTDNEIKNYWNSHLSRKIYTFTNLGNDYLPTITNVGKKTAASFKDRRAA 147

Query: 66  GRPKKSAVLKKNK---------KQTTPLESSQSNSIAKVALHDAG-SNSRLEGAEKEPIK 125
            R  +S+++ KNK          Q  P +S++ N     A+   G   S L+  E+  + 
Sbjct: 148 ARANRSSIMNKNKNVLAPSPQRSQAKPQQSARENQKGDEAIRMLGLKGSCLDSTERINLD 207

Query: 126 --SDEEEKKE---------TSNTAMKDPKVEEKETWELGSNELIDETIKGI--------- 185
              D++E  E         TS+T +      EKE   LG  E ++  I+G+         
Sbjct: 208 HCGDQKEGAELCLGNKVNITSSTVLSGDNNGEKEV--LGLCECVESEIRGLESGVVDPSG 267

Query: 186 -----DEREN---------------------SVWSSNIE--SEELYYSSSAWASSINSNF 214
                ++RE+                     S+WSSN E  S ELY    +++SS+NS F
Sbjct: 268 NVGFKEQREDGIIMEGSITDEVTKSEGRKSTSLWSSNAESGSGELY----SFSSSMNSTF 327

[Close]

BLAST of CmoCh08G012300 vs. NCBI nr
Match: gi|661886627|emb|CDP09991.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 67.8 bits (164), Expect = 2.7e-08
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 1


Query: 6   RWSLIAGNLPGRTDNEIKNYWNSRLSKKIYST 38
           RWSLIAG LPGRTDNEIKNYWNS LSKKIYST
Sbjct: 908 RWSLIAGRLPGRTDNEIKNYWNSHLSKKIYST 939

[Close]

BLAST of CmoCh08G012300 vs. NCBI nr
Match: gi|224074181|ref|XP_002304289.1| (hypothetical protein POPTR_0003s07680g [Populus trichocarpa])

HSP 1 Score: 67.0 bits (162), Expect = 4.6e-08
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 1


Query: 6   RWSLIAGNLPGRTDNEIKNYWNSRLSKKIYSTTAKKDAPE 46
           RWSLIAG LPGRTDNEIKNYWNS LSKKI   T K+  P+
Sbjct: 92  RWSLIAGRLPGRTDNEIKNYWNSHLSKKIIDQTQKEKMPD 131

The following BLAST results are available for this feature:

BLAST of CmoCh08G012300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MYB82_ARATH	3.5e-08	65.85	Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1	[more]
TT2_ARATH	1.3e-07	69.44	Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1	[more]
MYBP_MAIZE	2.3e-07	49.30	Myb-related protein P OS=Zea mays GN=P PE=2 SV=1	[more]
MYB5_ARATH	3.0e-07	79.31	Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1	[more]
MYB6_ARATH	5.1e-07	70.97	Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1	[more]

BLAST of CmoCh08G012300 vs. TrEMBL


Match Name	E-value	Identity	Description
M5XBH2_PRUPE	1.5e-10	30.14	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007594mg PE=4 SV=1	[more]
A0A068UNG5_COFCA	1.9e-08	93.75	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00030516001 PE=4 SV=1	[more]
B9GYD5_POPTR	3.2e-08	75.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s07680g PE=4 SV=1	[more]
A0A0B2QHJ4_GLYSO	7.1e-08	51.22	Transcription factor MYB12 OS=Glycine soja GN=glysoja_041579 PE=4 SV=1	[more]
B9RYQ9_RICCO	9.3e-08	60.32	R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_1312710 PE=4...	[more]

BLAST of CmoCh08G012300 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52600.1	2.0e-09	65.85	myb domain protein 82	[more]
AT5G35550.1	7.5e-09	69.44	Duplicated homeodomain-like superfamily protein	[more]
AT3G13540.1	1.7e-08	79.31	myb domain protein 5	[more]
AT5G16770.1	2.2e-08	79.31	myb domain protein 9	[more]
AT4G09460.1	2.9e-08	70.97	myb domain protein 6	[more]

BLAST of CmoCh08G012300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659117020\|ref\|XP_008458382.1\|	2.3e-39	50.90	PREDICTED: myb-related protein Myb4-like [Cucumis melo]	[more]
gi\|449464726\|ref\|XP_004150080.1\|	7.5e-35	51.11	PREDICTED: transcription repressor MYB6 [Cucumis sativus]	[more]
gi\|596128256\|ref\|XP_007222090.1\|	2.2e-10	30.14	hypothetical protein PRUPE_ppa007594mg [Prunus persica]	[more]
gi\|661886627\|emb\|CDP09991.1\|	2.7e-08	93.75	unnamed protein product [Coffea canephora]	[more]
gi\|224074181\|ref\|XP_002304289.1\|	4.6e-08	75.00	hypothetical protein POPTR_0003s07680g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G012300.1	CmoCh08G012300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 6..28 score: 7.
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 6..30 score: 4.6
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 5..36 score: 2.8
IPR017930	Myb domain	PROFILE	PS51294	HTH_MYB	coord: 1..34 score: 15
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 6..64 score: 3.0
None	No IPR available	PANTHER	PTHR10641:SF580	SUBFAMILY NOT NAMED	coord: 6..64 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh08G012300	CmaCh08G012610	Cucurbita maxima (Rimu)	cmacmoB912
CmoCh08G012300	Lsi05G015770	Bottle gourd (USVL1VR-Ls)	cmolsiB819
CmoCh08G012300	Lsi09G014720	Bottle gourd (USVL1VR-Ls)	cmolsiB797
CmoCh08G012300	Cp4.1LG17g00430	Cucurbita pepo (Zucchini)	cmocpeB852
CmoCh08G012300	Cp4.1LG03g11800	Cucurbita pepo (Zucchini)	cmocpeB862
CmoCh08G012300	MELO3C006700.2	Melon (DHL92) v3.6.1	cmomedB940
CmoCh08G012300	MELO3C034933.2	Melon (DHL92) v3.6.1	cmomedB903
CmoCh08G012300	CsaV3_6G022540	Cucumber (Chinese Long) v3	cmocucB1056
CmoCh08G012300	CsaV3_3G015040	Cucumber (Chinese Long) v3	cmocucB1032
CmoCh08G012300	Cla97C06G114210	Watermelon (97103) v2	cmowmbB896
CmoCh08G012300	Cla97C05G088010	Watermelon (97103) v2	cmowmbB887
CmoCh08G012300	Bhi01G000766	Wax gourd	cmowgoB1104
CmoCh08G012300	CsGy6G016640	Cucumber (Gy14) v2	cgybcmoB855
CmoCh08G012300	Carg18873	Silver-seed gourd	carcmoB0960
CmoCh08G012300	Carg05534	Silver-seed gourd	carcmoB0104

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh08G012300	Cucumber (Gy14) v2	cgybcmoB255
CmoCh08G012300	Cucumber (Gy14) v2	cgybcmoB421
CmoCh08G012300	Silver-seed gourd	carcmoB0391
CmoCh08G012300	Cucumber (Chinese Long) v3	cmocucB1029
CmoCh08G012300	Watermelon (97103) v2	cmowmbB882
CmoCh08G012300	Wax gourd	cmowgoB1083
CmoCh08G012300	Wax gourd	cmowgoB1085
CmoCh08G012300	Cucurbita moschata (Rifu)	cmocmoB232
CmoCh08G012300	Cucurbita moschata (Rifu)	cmocmoB233
CmoCh08G012300	Cucurbita moschata (Rifu)	cmocmoB310
CmoCh08G012300	Cucumber (Gy14) v1	cgycmoB0720
CmoCh08G012300	Cucurbita maxima (Rimu)	cmacmoB279
CmoCh08G012300	Cucurbita maxima (Rimu)	cmacmoB365
CmoCh08G012300	Cucurbita maxima (Rimu)	cmacmoB840
CmoCh08G012300	Wild cucumber (PI 183967)	cmocpiB883
CmoCh08G012300	Wild cucumber (PI 183967)	cmocpiB904
CmoCh08G012300	Cucumber (Chinese Long) v2	cmocuB872
CmoCh08G012300	Cucumber (Chinese Long) v2	cmocuB891
CmoCh08G012300	Melon (DHL92) v3.5.1	cmomeB832
CmoCh08G012300	Melon (DHL92) v3.5.1	cmomeB800
CmoCh08G012300	Watermelon (Charleston Gray)	cmowcgB792
CmoCh08G012300	Watermelon (Charleston Gray)	cmowcgB799
CmoCh08G012300	Watermelon (97103) v1	cmowmB856
CmoCh08G012300	Watermelon (97103) v1	cmowmB867
CmoCh08G012300	Cucurbita pepo (Zucchini)	cmocpeB833
CmoCh08G012300	Cucurbita pepo (Zucchini)	cmocpeB866
CmoCh08G012300	Bottle gourd (USVL1VR-Ls)	cmolsiB808
CmoCh08G012300	Bottle gourd (USVL1VR-Ls)	cmolsiB818