CmoCh08G010780 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G010780
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Basic helix-loop-helix DNA-binding superfamily protein, putative
Location	Cmo_Chr08 : 6942893 .. 6944076 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTTTCCCTCGAATGGATGATGGTTTTCCGGTGGAATTCTGGCATACTGATCTCCATTGGCTCGACCCTCCAATACCCGTCTCCGACCCCGCTCCGGGACAGATAAGTGCTTTCGTACCATATCTGCCCCAACCCACCATCGGATCGAGGCAAAAGAACAATCCTATCACCGCCACCACCATCATCGCCACCTATTCAGAGAACGTCCACAAGAGGGTGATCGAGTACTGGAGAAAGCAGTGGCAAGAAAAAAAGAAACCAGCTGAAATGGGAGATCTAGAGAGAGAAAGAAGTCATAGGCACATGCTGAACGAGAGGATGAGGAGAGAGAAACATAGACGGAGCTATTCTGAACTCCACTCTATGCTCCCAAGTAAAACTAAGGTCGTGTCAATATCATACTATCGTGAAGAGTTGTAATTAGGTCTCACAAGAGCCAAAACTTTACACAGACGATGGGTCGTCGTTGATATTGTAAGTGTTATTTTGTTTTTGTAGAACGACAAGAATTCGATCGTACAAATGGCGGCGAGGACGATAGAGGAGCTGAAAGCCTCAGAGGGAATGCTAAAGAAGAGAAATATAGAGCTGGAGATGGCGTTATCAGCAAAGAAGAGAAAGCAAGAGAAGGGGACAACACCAATTAGGGTTGCAGTGGCTAACCCTTCATCTGGGATAAACTCTATGCTGGGTGTTCTTAATCTTCTCAAAACTGTTGGAGTGAATGCCAAAGCTATTCATGCCACTTTCTTGGACTCTCGGTTTTCGACGCACATCGCCATTGATTCTCACGTAAGATCACCCGACCCTTTTAAATTTGTGTCAAATAGGTAACATAACTCTATTAACATCAATCGAAAAGAAATTACAAGTCACTCGGTAGAATACCATACAATTTTCTTAAAATACCTCAATCTTTAGGACGCGTTTAAGTGTTAAAGTCAAACGTATTGTGTCGAGTTCGTGTAATAATTTATGGATTTGGAAGAAATGGTGGTTGTTTGGTTGGTTTGATGGGCAGATGAGAGCTGCCGAAGTGGAAAGAGCGTTGCAAATGACACTAAGCGAAGCAGAGAGGAAACTTCAAAGGCAAATGCGAGGAAGGTTCCCATGACGTAAAAGATGGGTCCACAATTTGAAGTCTTAATAGACACGTTGGAAATTTCTTTTTTTAAAATATAT

mRNA sequence

AATTTTTCCCTCGAATGGATGATGGTTTTCCGGTGGAATTCTGGCATACTGATCTCCATTGGCTCGACCCTCCAATACCCGTCTCCGACCCCGCTCCGGGACAGATAAGTGCTTTCGTACCATATCTGCCCCAACCCACCATCGGATCGAGGCAAAAGAACAATCCTATCACCGCCACCACCATCATCGCCACCTATTCAGAGAACGTCCACAAGAGGGTGATCGAGTACTGGAGAAAGCAGTGGCAAGAAAAAAAGAAACCAGCTGAAATGGGAGATCTAGAGAGAGAAAGAAGTCATAGGCACATGCTGAACGAGAGGATGAGGAGAGAGAAACATAGACGGAGCTATTCTGAACTCCACTCTATGCTCCCAAGTAAAACTAAGAACGACAAGAATTCGATCGTACAAATGGCGGCGAGGACGATAGAGGAGCTGAAAGCCTCAGAGGGAATGCTAAAGAAGAGAAATATAGAGCTGGAGATGGCGTTATCAGCAAAGAAGAGAAAGCAAGAGAAGGGGACAACACCAATTAGGGTTGCAGTGGCTAACCCTTCATCTGGGATAAACTCTATGCTGGGTGTTCTTAATCTTCTCAAAACTGTTGGAGTGAATGCCAAAGCTATTCATGCCACTTTCTTGGACTCTCGGTTTTCGACGCACATCGCCATTGATTCTCACATGAGAGCTGCCGAAGTGGAAAGAGCGTTGCAAATGACACTAAGCGAAGCAGAGAGGAAACTTCAAAGGCAAATGCGAGGAAGGTTCCCATGACGTAAAAGATGGGTCCACAATTTGAAGTCTTAATAGACACGTTGGAAATTTCTTTTTTTAAAATATAT

Coding sequence (CDS)

ATGGATGATGGTTTTCCGGTGGAATTCTGGCATACTGATCTCCATTGGCTCGACCCTCCAATACCCGTCTCCGACCCCGCTCCGGGACAGATAAGTGCTTTCGTACCATATCTGCCCCAACCCACCATCGGATCGAGGCAAAAGAACAATCCTATCACCGCCACCACCATCATCGCCACCTATTCAGAGAACGTCCACAAGAGGGTGATCGAGTACTGGAGAAAGCAGTGGCAAGAAAAAAAGAAACCAGCTGAAATGGGAGATCTAGAGAGAGAAAGAAGTCATAGGCACATGCTGAACGAGAGGATGAGGAGAGAGAAACATAGACGGAGCTATTCTGAACTCCACTCTATGCTCCCAAGTAAAACTAAGAACGACAAGAATTCGATCGTACAAATGGCGGCGAGGACGATAGAGGAGCTGAAAGCCTCAGAGGGAATGCTAAAGAAGAGAAATATAGAGCTGGAGATGGCGTTATCAGCAAAGAAGAGAAAGCAAGAGAAGGGGACAACACCAATTAGGGTTGCAGTGGCTAACCCTTCATCTGGGATAAACTCTATGCTGGGTGTTCTTAATCTTCTCAAAACTGTTGGAGTGAATGCCAAAGCTATTCATGCCACTTTCTTGGACTCTCGGTTTTCGACGCACATCGCCATTGATTCTCACATGAGAGCTGCCGAAGTGGAAAGAGCGTTGCAAATGACACTAAGCGAAGCAGAGAGGAAACTTCAAAGGCAAATGCGAGGAAGGTTCCCATGA

Homology

[Close]

BLAST of CmoCh08G010780 vs. Swiss-Prot
Match: BH092_ARATH (Transcription factor bHLH92 OS=Arabidopsis thaliana GN=BHLH92 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.3e-26
Identity = 80/186 (43.01%), Postives = 111/186 (59.68%), Query Frame = 1


Query: 58  IATYSENVHKRVIEYWRKQWQEKKKPAEMGDLERERSHRHMLNERMRREKHRRSYSELHS 117
           I++   NV KR++   RK W+EKK        E+ERS RHML ER RREK ++SY  LHS
Sbjct: 54  ISSSKVNVKKRMVNLLRKNWEEKKNTVAP---EKERSRRHMLKERTRREKQKQSYLALHS 113

Query: 118 MLPSKTKNDKNSIVQMAARTIEELKASEGMLKKRNIELEMALSAKKRKQEKGTTPIRVAV 177
           +LP  TKNDKNSIV+ A   I +L+  +  L +R I++    SAK    E   T +RV +
Sbjct: 114 LLPFATKNDKNSIVEKAVDEIAKLQRLKKELVRR-IKVIEEKSAKDGHDEMSETKVRVNL 173

Query: 178 ANPSSGINSMLGVLNLLKTVGVNAKAIHATFLDSRFSTHIAIDSHMRAAEVERALQMTLS 237
             P SG++SML  L+ LK++G   K +HA F    FS  + I++ +R  EVE+ ++  L 
Sbjct: 174 KEPLSGLDSMLEALHYLKSMGTKLKTVHANFSPQEFSATMTIETQIRGEEVEKRVERRLQ 233

Query: 238 EAERKL 244
           E E KL
Sbjct: 234 ETEWKL 235

[Close]

BLAST of CmoCh08G010780 vs. Swiss-Prot
Match: BH148_ORYSJ (Transcription factor BHLH148 OS=Oryza sativa subsp. japonica GN=BHLH148 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-19
Identity = 74/240 (30.83%), Postives = 121/240 (50.42%), Query Frame = 1


Query: 22  PVSDPAPGQISAFVPYLPQPTIGSRQKNNPITATTIIATYSENVHKRVIEYW-------- 81
           P  +P P Q +A          G         A   + T   N+H+RV++          
Sbjct: 37  PEPEPEPEQAAAEARQSAFQEYGGAVHAGAPAAAGAVTTGGTNIHRRVMDVLGRMGGGGG 96

Query: 82  ------------RKQWQEKKKPAEMGDLERERSHRHMLNERMRREKHRRSYSELHSMLPS 141
                        ++  ++++  +  D+E  R  RHM+ ER RREK  +SY++L++M+ S
Sbjct: 97  GGEKGEGEEMEEEEEVPQRRRRGQGADVESSRGFRHMMRERQRREKLSQSYADLYAMVSS 156

Query: 142 KTKNDKNSIVQMAARTIEELKASEGMLKKRNIELEMALSAKKRKQEKGTTPIRVAVANPS 201
           ++K DKNSIVQ AA  I ELK +   L++RN EL+  +     +Q   T  ++  V  PS
Sbjct: 157 RSKGDKNSIVQSAAIYIHELKVARDQLQRRNEELKAQIMGHDEQQPCVT--VQFEVDEPS 216

Query: 202 SGINSMLGVLNLLKTVGVNAKAIHATFLDSRFSTHIAIDSHMRAAEVERALQMTLSEAER 242
           S I+SM+  L  LK + V A+ I ++   +R  T + +++ + A EVE+A++  L E ER
Sbjct: 217 SSIDSMIAALRRLKGMSVKARGIRSSMSGNRLWTEMNVETTIAACEVEKAVEEALKEVER 274

[Close]

BLAST of CmoCh08G010780 vs. TrEMBL
Match: A0A0A0LIK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G193320 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.2e-70
Identity = 163/266 (61.28%), Postives = 188/266 (70.68%), Query Frame = 1


Query: 1   MDDGFPVEFWHTDLHWLDPPI------PVSDPAPGQISAFVPY--LPQPTIGSRQKNN-- 60
           MDD FPVEFWH D  WLD PI      P S P   QISAF+PY   P PT    Q NN  
Sbjct: 1   MDDTFPVEFWHNDHFWLDAPISVPVSAPTSPPPAKQISAFLPYDLSPPPTGLLGQDNNIA 60

Query: 61  PITATTIIATYS---------ENVHKRVIEYWRKQWQEKKK-PAEMGDLERERSHRHMLN 120
             TA T+IA+ S          NV+KR+IEYWRK W EKK+ P   GDLERE+ HRHMLN
Sbjct: 61  TTTAATVIASASASASTSYDSRNVNKRMIEYWRKHWHEKKELPVSAGDLEREKCHRHMLN 120

Query: 121 ERMRREKHRRSYSELHSMLPSKTKNDKNSIVQMAARTIEELKASEGMLKKRNIELEMALS 180
           ERMRREK ++ Y  LHSMLP  TKNDKNSIVQ AARTI+E+K  E  LK+RN ELEM ++
Sbjct: 121 ERMRREKQKQCYLALHSMLPRNTKNDKNSIVQSAARTIQEMKGLEKTLKRRNSELEMEIA 180

Query: 181 AKKRKQEKGTTPIRVAVANPSSGINSMLGVLNLLKTVGVNAKAIHATFLDSRFSTHIAID 240
              +K+EK    I VA+AN S GINSML VLN+LKTVGVN+ AIHATF +S+FS  +AID
Sbjct: 181 IAMKKKEKKEGIINVALANTSCGINSMLTVLNVLKTVGVNSNAIHATFFNSQFSAQLAID 240

Query: 241 SHMRAAEVERALQMTLSEAERKLQRQ 247
           +HMR AEVERALQ+TL+EAERK QRQ
Sbjct: 241 THMRVAEVERALQLTLNEAERKFQRQ 266

[Close]

BLAST of CmoCh08G010780 vs. TrEMBL
Match: A0A061EUE1_THECC (Basic helix-loop-helix DNA-binding superfamily protein, putative OS=Theobroma cacao GN=TCM_020787 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.7e-32
Identity = 100/219 (45.66%), Postives = 134/219 (61.19%), Query Frame = 1


Query: 28  PGQISAFVPYLPQPTIGSRQKNNPITATTIIATYSENVHKRVIEYWRKQWQEKKKPAEMG 87
           P + SAFVPY   P IG   +     A       S N++KR+IE+  K W   +   E  
Sbjct: 23  PVRQSAFVPYPNTPRIGLGLER----AGCSNGVNSGNMNKRMIEFLMKSWPTTR---ETR 82

Query: 88  DLERERSHRHMLNERMRREKHRRSYSELHSMLPSKTKNDKNSIVQMAARTIEELKASEGM 147
           D E++R  RHM+NERMRREK +RSY  LHSMLP  TKNDKNSIVQ AA  + EL+  +  
Sbjct: 83  DTEQDRCFRHMMNERMRREKQKRSYCSLHSMLPPGTKNDKNSIVQTAANRVRELEWLKKD 142

Query: 148 LKKRNIELEMALSAKKRKQEKGTTPIRVAVANPSSGINSMLGVLNLLKTVGVNAKAIHAT 207
           L+K+N ELE  L+A    +    T I V + NP+SGI+SMLGVL  LK +    + I + 
Sbjct: 143 LEKKNHELESNLAAMTDVKINEGTQITVRLDNPTSGIDSMLGVLKCLKKLDSKPRMIQSE 202

Query: 208 FLDSRFSTHIAIDSHMRAAEVERALQMTLSEAERKLQRQ 247
           F +  F   + I++ +RAAE+E+A+  TL EAERKLQ++
Sbjct: 203 FTNQEFVAVMDIETEIRAAEIEKAVNRTLQEAERKLQQR 234

[Close]

BLAST of CmoCh08G010780 vs. TrEMBL
Match: M5XRD4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017791mg PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.8e-31
Identity = 95/218 (43.58%), Postives = 133/218 (61.01%), Query Frame = 1


Query: 33  AFVPYLPQPTIGSRQKNNPITATTIIATYSENVHKRVIEYWRKQWQEKKKPAEMGDLERE 92
           AFVPY  +P         P          S N++KR++++ RK W         GD  +E
Sbjct: 28  AFVPYTSRPITEKGLDKPP---------NSMNMNKRMVQFLRKSWAPATARIVTGDDCKE 87

Query: 93  RSHRHMLNERMRREKHRRSYSELHSMLPSKTKNDKNSIVQMAARTIEELKASEGMLKKRN 152
           R  RHMLNERMRREK ++SY  LHSMLP+  K+DKN IVQM A  I++L+  +  L+KRN
Sbjct: 88  RGFRHMLNERMRREKQKQSYMALHSMLPTGAKSDKNWIVQMTAMNIQQLQRYKEELRKRN 147

Query: 153 IELEMALSAKKRKQEKGTTPIRVAVANPSSGINSMLGVLNLLKTVGVNAKAIHATFLDSR 212
           +E+E  L A + K+    + IR+ VANP+SG++SML VL  L+ +G+ A+ + + F    
Sbjct: 148 MEVEAILVANE-KERVNWSKIRLRVANPTSGVDSMLEVLRCLQYLGLKARNVRSNFSAQE 207

Query: 213 FSTHIAIDSHMRAAEVERALQMTLSEAERKLQRQMRGR 251
           FS  + I++ + AAE+E ALQ TL EAERKL+    GR
Sbjct: 208 FSAELEIETKIGAAEIEEALQETLYEAERKLRFSFPGR 235

[Close]

BLAST of CmoCh08G010780 vs. TrEMBL
Match: A0A059AUU2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00196 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 9.1e-31
Identity = 100/238 (42.02%), Postives = 137/238 (57.56%), Query Frame = 1


Query: 12  TDLHWLD-----PPIPVSDPAPGQISAFVPYLPQ-PTIGSRQKNNPITATTIIATYSENV 71
           +D+ W D     PP P     P   SAF PY  + P+       NP            N+
Sbjct: 11  SDIFWCDQLVEPPPPPPPPLPPANPSAFSPYTNRLPSQDRGFMPNP----------GNNM 70

Query: 72  HKRVIEYWRKQWQEKKKPAEMGDLERERSHRHMLNERMRREKHRRSYSELHSMLPSKTKN 131
           +KRV+E+ R+ W E   P+++ + +RER  RHML+ERMRREK +RSYS L S LP  TKN
Sbjct: 71  NKRVMEFLRRSWAE---PSQIQEFDRERGFRHMLSERMRREKQKRSYSSLLSELPHGTKN 130

Query: 132 DKNSIVQMAARTIEELKASEGMLKKRNIELEMALSAKKRKQEKGTTPIRVAVANPSSGIN 191
           DKNSIVQ A   I+EL   +  L+++N EL+  L+ K    +   T IRV +ANP+SGI+
Sbjct: 131 DKNSIVQTACMRIKELVKYKQELERQNGELKSGLNEKSGGDKAEGTKIRVKIANPTSGID 190

Query: 192 SMLGVLNLLKTVGVNAKAIHATFLDSRFSTHIAIDSHMRAAEVERALQMTLSEAERKL 244
           SML VL  L  +G+ A AI       +    I +++ + AA+VE+ +Q TL EAERKL
Sbjct: 191 SMLEVLKCLDNMGLKATAIQTQCSADQLFAVIEVENEIEAADVEKVIQWTLLEAERKL 235

[Close]

BLAST of CmoCh08G010780 vs. TrEMBL
Match: A0A068TV08_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026212001 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.3e-29
Identity = 101/236 (42.80%), Postives = 134/236 (56.78%), Query Frame = 1


Query: 16  WLDPPIPVSDPAPGQI--SAFVPYLPQPTIGSRQKNNPITATTIIATYSENVHKRVIEYW 75
           W D  +       GQ   S+FV Y   P  G          T        N +KR+IE  
Sbjct: 17  WFDGEVLPLPAVDGQYHGSSFVKYSNHPLQGFGSNG-----TVNHGRNGRNANKRMIELL 76

Query: 76  RKQWQEKKKPAEMG--DLERERSHRHMLNERMRREKHRRSYSELHSMLPSKTKNDKNSIV 135
           +K+W    KP  +G  + ERER+ +H++NERMRREK ++S+ ELH MLP  TK DKNSIV
Sbjct: 77  KKRW----KPPTIGAVEAERERNRKHVINERMRREKQKKSFVELHKMLPYGTKGDKNSIV 136

Query: 136 QMAARTIEELKASEGMLKKRNIELEMALSAKKRKQEKG--TTPIRVAVANPSSGINSMLG 195
           +MAA  I+EL+     LK+R  ELE+AL+A     E+      I++ V +PSSGI+SML 
Sbjct: 137 RMAAERIQELQRCNEELKRRKFELELALAAAIHDDEENLEVAKIKLRVVHPSSGIDSMLD 196

Query: 196 VLNLLKTVGVNAKAIHATFLDSRFSTHIAIDSHMRAAEVERALQMTLSEAERKLQR 246
           VL  LK  G   KAI +TF    FS  + I++   AAEVE+A+  TL EAE+K  R
Sbjct: 197 VLKCLKNTGTKTKAIQSTFSSQEFSAVLEIEA-KGAAEVEKAVHETLFEAEKKFGR 242

[Close]

BLAST of CmoCh08G010780 vs. TAIR10
Match: AT5G43650.1 (AT5G43650.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-27
Identity = 80/186 (43.01%), Postives = 111/186 (59.68%), Query Frame = 1


Query: 58  IATYSENVHKRVIEYWRKQWQEKKKPAEMGDLERERSHRHMLNERMRREKHRRSYSELHS 117
           I++   NV KR++   RK W+EKK        E+ERS RHML ER RREK ++SY  LHS
Sbjct: 54  ISSSKVNVKKRMVNLLRKNWEEKKNTVAP---EKERSRRHMLKERTRREKQKQSYLALHS 113

Query: 118 MLPSKTKNDKNSIVQMAARTIEELKASEGMLKKRNIELEMALSAKKRKQEKGTTPIRVAV 177
           +LP  TKNDKNSIV+ A   I +L+  +  L +R I++    SAK    E   T +RV +
Sbjct: 114 LLPFATKNDKNSIVEKAVDEIAKLQRLKKELVRR-IKVIEEKSAKDGHDEMSETKVRVNL 173

Query: 178 ANPSSGINSMLGVLNLLKTVGVNAKAIHATFLDSRFSTHIAIDSHMRAAEVERALQMTLS 237
             P SG++SML  L+ LK++G   K +HA F    FS  + I++ +R  EVE+ ++  L 
Sbjct: 174 KEPLSGLDSMLEALHYLKSMGTKLKTVHANFSPQEFSATMTIETQIRGEEVEKRVERRLQ 233

Query: 238 EAERKL 244
           E E KL
Sbjct: 234 ETEWKL 235

[Close]

BLAST of CmoCh08G010780 vs. NCBI nr
Match: gi|659130477|ref|XP_008465193.1| (PREDICTED: transcription factor bHLH92 [Cucumis melo])

HSP 1 Score: 278.9 bits (712), Expect = 8.9e-72
Identity = 161/257 (62.65%), Postives = 186/257 (72.37%), Query Frame = 1


Query: 1   MDDGFPVEFWHTDLHWLDPPI------PVSDPAPGQISAFVPYLPQPTIG--SRQKNNPI 60
           MDD FPVEFWH D  WLD PI      P S P   QISAF+PYL  P  G   +  NN  
Sbjct: 1   MDDTFPVEFWHNDHFWLDAPISVPLSAPSSPPPATQISAFLPYLSAPPTGLLGQDNNNIA 60

Query: 61  TATTIIATY--SENVHKRVIEYWRKQWQEKKK-PAEMGDLERERSHRHMLNERMRREKHR 120
           T TT  AT   S NV+KR+IEYW K W EKK+ P   GDLERE+ HRHMLNERMRREK +
Sbjct: 61  TTTTTAATSYDSRNVNKRMIEYWTKHWHEKKELPVSAGDLEREKCHRHMLNERMRREKQK 120

Query: 121 RSYSELHSMLPSKTKNDKNSIVQMAARTIEELKASEGMLKKRNIELEMALSAKKRKQEKG 180
           +SY  LHSMLP  TKNDKNSIVQ AARTI+E+K  E  LK+RN ELEM ++   +K+EK 
Sbjct: 121 QSYLALHSMLPKNTKNDKNSIVQSAARTIQEMKGLEKTLKRRNSELEMEIAIAMKKKEKE 180

Query: 181 TTPIRVAVANPSSGINSMLGVLNLLKTVGVNAKAIHATFLDSRFSTHIAIDSHMRAAEVE 240
              I VA+ N S GINSML VLN+LKTVGVN+KAIHATF +S+FS  +AID+HM AAEVE
Sbjct: 181 KRIINVALRNTSCGINSMLTVLNVLKTVGVNSKAIHATFFNSQFSAQLAIDTHMGAAEVE 240

Query: 241 RALQMTLSEAERKLQRQ 247
           RALQ+TL+EAERK +RQ
Sbjct: 241 RALQVTLNEAERKFRRQ 257

[Close]

BLAST of CmoCh08G010780 vs. NCBI nr
Match: gi|778668857|ref|XP_011649165.1| (PREDICTED: transcription factor bHLH92, partial [Cucumis sativus])

HSP 1 Score: 274.6 bits (701), Expect = 1.7e-70
Identity = 163/266 (61.28%), Postives = 188/266 (70.68%), Query Frame = 1


Query: 1   MDDGFPVEFWHTDLHWLDPPI------PVSDPAPGQISAFVPY--LPQPTIGSRQKNN-- 60
           MDD FPVEFWH D  WLD PI      P S P   QISAF+PY   P PT    Q NN  
Sbjct: 1   MDDTFPVEFWHNDHFWLDAPISVPVSAPTSPPPAKQISAFLPYDLSPPPTGLLGQDNNIA 60

Query: 61  PITATTIIATYS---------ENVHKRVIEYWRKQWQEKKK-PAEMGDLERERSHRHMLN 120
             TA T+IA+ S          NV+KR+IEYWRK W EKK+ P   GDLERE+ HRHMLN
Sbjct: 61  TTTAATVIASASASASTSYDSRNVNKRMIEYWRKHWHEKKELPVSAGDLEREKCHRHMLN 120

Query: 121 ERMRREKHRRSYSELHSMLPSKTKNDKNSIVQMAARTIEELKASEGMLKKRNIELEMALS 180
           ERMRREK ++ Y  LHSMLP  TKNDKNSIVQ AARTI+E+K  E  LK+RN ELEM ++
Sbjct: 121 ERMRREKQKQCYLALHSMLPRNTKNDKNSIVQSAARTIQEMKGLEKTLKRRNSELEMEIA 180

Query: 181 AKKRKQEKGTTPIRVAVANPSSGINSMLGVLNLLKTVGVNAKAIHATFLDSRFSTHIAID 240
              +K+EK    I VA+AN S GINSML VLN+LKTVGVN+ AIHATF +S+FS  +AID
Sbjct: 181 IAMKKKEKKEGIINVALANTSCGINSMLTVLNVLKTVGVNSNAIHATFFNSQFSAQLAID 240

Query: 241 SHMRAAEVERALQMTLSEAERKLQRQ 247
           +HMR AEVERALQ+TL+EAERK QRQ
Sbjct: 241 THMRVAEVERALQLTLNEAERKFQRQ 266

[Close]

BLAST of CmoCh08G010780 vs. NCBI nr
Match: gi|700206509|gb|KGN61628.1| (hypothetical protein Csa_2G193320 [Cucumis sativus])

HSP 1 Score: 274.6 bits (701), Expect = 1.7e-70
Identity = 163/266 (61.28%), Postives = 188/266 (70.68%), Query Frame = 1


Query: 1   MDDGFPVEFWHTDLHWLDPPI------PVSDPAPGQISAFVPY--LPQPTIGSRQKNN-- 60
           MDD FPVEFWH D  WLD PI      P S P   QISAF+PY   P PT    Q NN  
Sbjct: 1   MDDTFPVEFWHNDHFWLDAPISVPVSAPTSPPPAKQISAFLPYDLSPPPTGLLGQDNNIA 60

Query: 61  PITATTIIATYS---------ENVHKRVIEYWRKQWQEKKK-PAEMGDLERERSHRHMLN 120
             TA T+IA+ S          NV+KR+IEYWRK W EKK+ P   GDLERE+ HRHMLN
Sbjct: 61  TTTAATVIASASASASTSYDSRNVNKRMIEYWRKHWHEKKELPVSAGDLEREKCHRHMLN 120

Query: 121 ERMRREKHRRSYSELHSMLPSKTKNDKNSIVQMAARTIEELKASEGMLKKRNIELEMALS 180
           ERMRREK ++ Y  LHSMLP  TKNDKNSIVQ AARTI+E+K  E  LK+RN ELEM ++
Sbjct: 121 ERMRREKQKQCYLALHSMLPRNTKNDKNSIVQSAARTIQEMKGLEKTLKRRNSELEMEIA 180

Query: 181 AKKRKQEKGTTPIRVAVANPSSGINSMLGVLNLLKTVGVNAKAIHATFLDSRFSTHIAID 240
              +K+EK    I VA+AN S GINSML VLN+LKTVGVN+ AIHATF +S+FS  +AID
Sbjct: 181 IAMKKKEKKEGIINVALANTSCGINSMLTVLNVLKTVGVNSNAIHATFFNSQFSAQLAID 240

Query: 241 SHMRAAEVERALQMTLSEAERKLQRQ 247
           +HMR AEVERALQ+TL+EAERK QRQ
Sbjct: 241 THMRVAEVERALQLTLNEAERKFQRQ 266

[Close]

BLAST of CmoCh08G010780 vs. NCBI nr
Match: gi|694439051|ref|XP_009346437.1| (PREDICTED: transcription factor bHLH92-like [Pyrus x bretschneideri])

HSP 1 Score: 154.8 bits (390), Expect = 1.9e-34
Identity = 102/221 (46.15%), Postives = 138/221 (62.44%), Query Frame = 1


Query: 24  SDPAPGQISAFVPYLPQPTIGSRQKNNPITATTIIATYSENVHKRVIEYWRKQWQEKKKP 83
           S P     SAFVPY  +P   S Q  N +T        S N+  R++++ RK WQ     
Sbjct: 19  SPPVVQNQSAFVPYTNRPN--SNQLPNGVTK-------SMNMTMRMLQFLRKSWQPATAR 78

Query: 84  AEMGDLERERSHRHMLNERMRREKHRRSYSELHSMLPSKTKNDKNSIVQMAARTIEELKA 143
            E GD  +ER  RHM+NERMRREK + SY  LHSMLP+ T+NDKN IVQMA   I++LK 
Sbjct: 79  NEAGDDSKERGFRHMINERMRREKQKHSYLALHSMLPAGTRNDKNRIVQMATMNIQQLKR 138

Query: 144 SEGMLKKRNIELEMALSAKKRKQEKGTTPIRVAVANPSSGINSMLGVLNLLKTVGVNAKA 203
           SE  L+K+N+ELE  L   ++++ K    I++ VANP+SGI+SML VL  L+ +G+ A+ 
Sbjct: 139 SEEELRKKNMELETLLVENEKERVK-RAKIKLKVANPTSGIDSMLEVLKCLQHLGLKARN 198

Query: 204 IHATFLDSRFSTHIAIDSHMRAAEVERALQMTLSEAERKLQ 245
           I + F    FS  + I+S + AAE+E  +Q TL EAERKL+
Sbjct: 199 ISSNFSLEEFSAELEIESKIGAAEIEEYVQETLYEAERKLR 229

[Close]

BLAST of CmoCh08G010780 vs. NCBI nr
Match: gi|657997352|ref|XP_008391054.1| (PREDICTED: transcription factor bHLH92 [Malus domestica])

HSP 1 Score: 150.6 bits (379), Expect = 3.7e-33
Identity = 100/212 (47.17%), Postives = 136/212 (64.15%), Query Frame = 1


Query: 32  SAFVPYLPQPTIGSRQKNNPITATTIIATYSENVHKRVIEYWRKQWQEKKKPAEMGDLER 91
           SAFVPY  +P   S Q  N +         S NV+KR++++ RK WQ      E G+  R
Sbjct: 27  SAFVPYTNRPI--SNQLPNGVXK-------SMNVNKRMLQFLRKSWQPAAARNEAGEDGR 86

Query: 92  ERSHRHMLNERMRREKHRRSYSELHSMLPSKTKNDKNSIVQMAARTIEELKASEGMLKKR 151
           ER  RHM+NERMRREK ++SY  LHSML + T+NDKN IVQM A  I++LK  E  L+K+
Sbjct: 87  ERGXRHMINERMRREKQKQSYLALHSMLSAGTRNDKNLIVQMTAMNIQQLKRYEEELRKK 146

Query: 152 NIELEMALSAKKRKQEKGTTPIRVAVANPSSGINSMLGVLNLLKTVGVNAKAIHATFLDS 211
           N+ELE  L   ++++ K  T IR+ VANP+SGI+S L VL  L+ +G+ A+ I + F   
Sbjct: 147 NMELETLLVENEKERVK-WTKIRLKVANPTSGIDSTLEVLKCLQHLGLKARNIRSNFSLE 206

Query: 212 RFSTHIAIDSHMRAAEVERALQMTLSEAERKL 244
            FS  + I+S + AAE+E ++Q TL EAERKL
Sbjct: 207 EFSAELEIESKIGAAEIEESVQETLYEAERKL 228

The following BLAST results are available for this feature:

BLAST of CmoCh08G010780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BH092_ARATH	3.3e-26	43.01	Transcription factor bHLH92 OS=Arabidopsis thaliana GN=BHLH92 PE=2 SV=1	[more]
BH148_ORYSJ	1.8e-19	30.83	Transcription factor BHLH148 OS=Oryza sativa subsp. japonica GN=BHLH148 PE=1 SV=...	[more]

BLAST of CmoCh08G010780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIK3_CUCSA	1.2e-70	61.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G193320 PE=4 SV=1	[more]
A0A061EUE1_THECC	3.7e-32	45.66	Basic helix-loop-helix DNA-binding superfamily protein, putative OS=Theobroma ca...	[more]
M5XRD4_PRUPE	1.8e-31	43.58	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017791mg PE=4 SV=1	[more]
A0A059AUU2_EUCGR	9.1e-31	42.02	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00196 PE=4 SV=1	[more]
A0A068TV08_COFCA	1.3e-29	42.80	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026212001 PE=4 SV=1	[more]

BLAST of CmoCh08G010780 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43650.1	1.9e-27	43.01	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of CmoCh08G010780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130477\|ref\|XP_008465193.1\|	8.9e-72	62.65	PREDICTED: transcription factor bHLH92 [Cucumis melo]	[more]
gi\|778668857\|ref\|XP_011649165.1\|	1.7e-70	61.28	PREDICTED: transcription factor bHLH92, partial [Cucumis sativus]	[more]
gi\|700206509\|gb\|KGN61628.1\|	1.7e-70	61.28	hypothetical protein Csa_2G193320 [Cucumis sativus]	[more]
gi\|694439051\|ref\|XP_009346437.1\|	1.9e-34	46.15	PREDICTED: transcription factor bHLH92-like [Pyrus x bretschneideri]	[more]
gi\|657997352\|ref\|XP_008391054.1\|	3.7e-33	47.17	PREDICTED: transcription factor bHLH92 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G010780.1	CmoCh08G010780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 96..159 score: 3.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 96..141 score: 6.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 98..147 score: 8.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 92..141 score: 12
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 91..158 score: 7.46
None	No IPR available	PANTHER	PTHR23042	CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS	coord: 1..248 score: 2.3
None	No IPR available	PANTHER	PTHR23042:SF65	TRANSCRIPTION FACTOR BHLH92	coord: 1..248 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh08G010780	Cucsa.383850	Cucumber (Gy14) v1	cgycmoB1059
CmoCh08G010780	CmaCh17G001790	Cucurbita maxima (Rimu)	cmacmoB365
CmoCh08G010780	CmaCh08G011060	Cucurbita maxima (Rimu)	cmacmoB912
CmoCh08G010780	Cla007559	Watermelon (97103) v1	cmowmB867
CmoCh08G010780	Csa2G193320	Cucumber (Chinese Long) v2	cmocuB868
CmoCh08G010780	MELO3C026778	Melon (DHL92) v3.5.1	cmomeB828
CmoCh08G010780	ClCG06G006720	Watermelon (Charleston Gray)	cmowcgB799
CmoCh08G010780	CSPI02G10650	Wild cucumber (PI 183967)	cmocpiB879
CmoCh08G010780	Lsi09G012630	Bottle gourd (USVL1VR-Ls)	cmolsiB797
CmoCh08G010780	Cp4.1LG12g01640	Cucurbita pepo (Zucchini)	cmocpeB833
CmoCh08G010780	Cp4.1LG17g01770	Cucurbita pepo (Zucchini)	cmocpeB853
CmoCh08G010780	MELO3C026778.2	Melon (DHL92) v3.6.1	cmomedB935
CmoCh08G010780	CsaV3_2G013060	Cucumber (Chinese Long) v3	cmocucB1026
CmoCh08G010780	Cla97C06G116300	Watermelon (97103) v2	cmowmbB896
CmoCh08G010780	CsGy2G010650	Cucumber (Gy14) v2	cgybcmoB254
CmoCh08G010780	Carg10943	Silver-seed gourd	carcmoB1452
CmoCh08G010780	Carg10070	Silver-seed gourd	carcmoB0326

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh08G010780	CmoCh17G001760	Cucurbita moschata (Rifu)	cmocmoB310

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh08G010780	Cucumber (Chinese Long) v3	cmocucB1027
CmoCh08G010780	Cucumber (Chinese Long) v3	cmocucB1032
CmoCh08G010780	Cucumber (Chinese Long) v3	cmocucB1070
CmoCh08G010780	Watermelon (97103) v2	cmowmbB886
CmoCh08G010780	Watermelon (97103) v2	cmowmbB920
CmoCh08G010780	Wax gourd	cmowgoB1084
CmoCh08G010780	Wax gourd	cmowgoB1101
CmoCh08G010780	Cucurbita moschata (Rifu)	cmocmoB233
CmoCh08G010780	Cucurbita moschata (Rifu)	cmocmoB484
CmoCh08G010780	Cucumber (Gy14) v1	cgycmoB0720
CmoCh08G010780	Cucurbita maxima (Rimu)	cmacmoB279
CmoCh08G010780	Cucurbita maxima (Rimu)	cmacmoB537
CmoCh08G010780	Cucurbita maxima (Rimu)	cmacmoB837
CmoCh08G010780	Wild cucumber (PI 183967)	cmocpiB883
CmoCh08G010780	Cucumber (Chinese Long) v2	cmocuB872
CmoCh08G010780	Melon (DHL92) v3.5.1	cmomeB832
CmoCh08G010780	Watermelon (Charleston Gray)	cmowcgB792
CmoCh08G010780	Watermelon (Charleston Gray)	cmowcgB808
CmoCh08G010780	Watermelon (97103) v1	cmowmB853
CmoCh08G010780	Watermelon (97103) v1	cmowmB856
CmoCh08G010780	Cucurbita pepo (Zucchini)	cmocpeB849
CmoCh08G010780	Cucurbita pepo (Zucchini)	cmocpeB862
CmoCh08G010780	Cucurbita pepo (Zucchini)	cmocpeB866
CmoCh08G010780	Bottle gourd (USVL1VR-Ls)	cmolsiB823
CmoCh08G010780	Cucumber (Gy14) v2	cgybcmoB421
CmoCh08G010780	Cucumber (Gy14) v2	cgybcmoB959
CmoCh08G010780	Melon (DHL92) v3.6.1	cmomedB940
CmoCh08G010780	Silver-seed gourd	carcmoB0333
CmoCh08G010780	Silver-seed gourd	carcmoB1025
CmoCh08G010780	Silver-seed gourd	carcmoB1289