CmoCh08G010740 (gene) Cucurbita moschata (Rifu)

NameCmoCh08G010740
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Cellulose synthase-like protein G1) (2.4.1.12)
LocationCmo_Chr08 : 6922203 .. 6923104 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCCGGTATCCCGCTCCGTCGCGCCAGAAAATCTCCCCGGCGACGAGGAGCTACCAGGTGTCGACGTGTTCATCCCCACAGCGGATCCGGCGAAAGAGCCGACAGTGGAGGTGATGAACACCGTGTTGTCGTCTCTGGCTCTGGAGTATCCAGCGGAGAAGGTGGGCGTCTACCTGTCGGACGCCGGCGGACGCTGTATGCATTAAAAGAAACTTTTCTACAATATCAGAAAGAATGATATCTATGACAACCAATCCCGGTCTGGTTTCAAGGTCATGAACTCCTCCACGACCCGTTCGCTTTTACATGGATGTTCTTGCAGGCTACCTGTTTGTTAAAATGCCATGTTTCTGGGTTTTGTTTTCTAGACCAAGTGGCGTGGAATGGATGGGGTAAGAGGGCCGGTGTTGTCCGGAACTGGATATCTCTTGAGGAGGAAGGCGTTGTTTTGGAATCCTAATCAGGAAGGTAAATGAAATTCGTCTGTTTTGATTTCAAACTTGGTTCCTCTGTTTCTTATGAATCCCAGAGAGGTTTGATTCAGAGCCACAGAAAGCTCTTGGTCGATCCCAAAAGTTCATTGACTCGTTGAATGCAAAAAAGGAGTATCAGTGCGTATCTGCTGCAATGCAGAGGATGGAGTTGTGTTTACCTGTACTCAAAGCGGGCATGCTTCCTGGGTTGCAGCCCAGTCGACATGAAAGACGCCATGGTTCAGATGCTAAAAATGGAGCTCAGAGTTGTTCCAAGTTGCTTTATCTAAGTATAGTCCTCTCACATACGGTGTCTCAAGGATGTCAATTCTCCAAAGCATGGCCTACGCCTACTTCACATTCTCCTCCCTGCCTTCAGTTGCTTTCGTCTTGTATGGGGTGGTTCCTCAATGGGGCTTCCTGA

mRNA sequence

ATGGCGGCCGGTATCCCGCTCCGTCGCGCCAGAAAATCTCCCCGGCGACGAGGAGCTACCAGGTGTCGACGTGTTCATCCCCACAGCGGATCCGGCGAAAGAGCCGACAGTGGAGGTGATGAACACCGTGTTGTCGTCTCTGGCTCTGGAGTATCCAGCGGAGAAGGTGGGCGTCTACCTGTCGGACGCCGGCGGACGCTAAAGAATGATATCTATGACAACCAATCCCGGTCTGGTTTCAAGGTCATGAACTCCTCCACGACCCGTTCGCTTTTACATGGATGTTCTTGCAGGCTACCTACCAAGTGGCGTGGAATGGATGGGGTAAGAGGGCCGGTGTTGTCCGGAACTGGATATCTCTTGAGGAGGAAGGCGTTGTTTTGGAATCCTAATCAGGAAGAGAGGTTTGATTCAGAGCCACAGAAAGCTCTTGGTCGATCCCAAAAGTTCATTGACTCGTTGAATGCAAAAAAGGAGTATCAGTGCGTATCTGCTGCAATGCAGAGGATGGAGTTGTGTTTACCTGTACTCAAAGCGGGCATGCTTCCTGGGTTGCAGCCCAGTCGACATGAAAGACGCCATGGTTCAGATGCTAAAAATGGAGCTCAGAGTTGTTCCAAGTTGCTTTATCTAAGTATAGTCCTCTCACATACGGTGTCTCAAGGATGTCAATTCTCCAAAGCATGGCCTACGCCTACTTCACATTCTCCTCCCTGCCTTCAGTTGCTTTCGTCTTGTATGGGGTGGTTCCTCAATGGGGCTTCCTGA

Coding sequence (CDS)

ATGGCGGCCGGTATCCCGCTCCGTCGCGCCAGAAAATCTCCCCGGCGACGAGGAGCTACCAGGTGTCGACGTGTTCATCCCCACAGCGGATCCGGCGAAAGAGCCGACAGTGGAGGTGATGAACACCGTGTTGTCGTCTCTGGCTCTGGAGTATCCAGCGGAGAAGGTGGGCGTCTACCTGTCGGACGCCGGCGGACGCTAAAGAATGATATCTATGACAACCAATCCCGGTCTGGTTTCAAGGTCATGAACTCCTCCACGACCCGTTCGCTTTTACATGGATGTTCTTGCAGGCTACCTACCAAGTGGCGTGGAATGGATGGGGTAAGAGGGCCGGTGTTGTCCGGAACTGGATATCTCTTGAGGAGGAAGGCGTTGTTTTGGAATCCTAATCAGGAAGAGAGGTTTGATTCAGAGCCACAGAAAGCTCTTGGTCGATCCCAAAAGTTCATTGACTCGTTGAATGCAAAAAAGGAGTATCAGTGCGTATCTGCTGCAATGCAGAGGATGGAGTTGTGTTTACCTGTACTCAAAGCGGGCATGCTTCCTGGGTTGCAGCCCAGTCGACATGAAAGACGCCATGGTTCAGATGCTAAAAATGGAGCTCAGAGTTGTTCCAAGTTGCTTTATCTAAGTATAGTCCTCTCACATACGGTGTCTCAAGGATGTCAATTCTCCAAAGCATGGCCTACGCCTACTTCACATTCTCCTCCCTGCCTTCAGTTGCTTTCGTCTTGTATGGGGTGGTTCCTCAATGGGGCTTCCTGA
BLAST of CmoCh08G010740 vs. TrEMBL
Match: A0A0J8CPJ7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g056710 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.6e-14
Identity = 47/108 (43.52%), Postives = 64/108 (59.26%), Query Frame = 1

Query: 66  TLKNDIYDNQSRSGFKVMNSSTTRSLLHGCSCRLPTKWRGMDGVRGPVLSGTGYLLRRKA 125
           T KNDIYD Q+RS +K                   TKW+GMDG+RGPVL+GTGY L+RKA
Sbjct: 322 TSKNDIYDGQARSAYK-------------------TKWQGMDGIRGPVLTGTGYYLKRKA 381

Query: 126 LFWNPNQEERF-DSEPQKALGRSQKFIDSLNAKKEYQCVSAAMQRMEL 173
           L+  P+ E+ F  ++P+KA G S KFI S+++  +       M R +L
Sbjct: 382 LYGQPHNEDEFLINQPEKAFGSSTKFIASVSSNSKQNMALKEMTRDDL 410

BLAST of CmoCh08G010740 vs. TrEMBL
Match: A0A0K9REB7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_076690 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.5e-12
Identity = 45/106 (42.45%), Postives = 58/106 (54.72%), Query Frame = 1

Query: 68  KNDIYDNQSRSGFKVMNSSTTRSLLHGCSCRLPTKWRGMDGVRGPVLSGTGYLLRRKALF 127
           KNDIYD Q+RS                      TKW+GMDG+RGPVL+GTGY L+RKALF
Sbjct: 324 KNDIYDGQARSAHM-------------------TKWKGMDGLRGPVLNGTGYYLKRKALF 383

Query: 128 WNPNQEERF-DSEPQKALGRSQKFIDSLNAKKEYQCVSAAMQRMEL 173
             PN E+ + +S+P+KA G S K I +L    +       +   EL
Sbjct: 384 GKPNNEDEYLNSQPEKAFGSSTKLIAALRENSKQNLAIKELTEDEL 410

BLAST of CmoCh08G010740 vs. TrEMBL
Match: A0A061EUI9_THECC (Cellulose synthase, putative isoform 1 OS=Theobroma cacao GN=TCM_020810 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.5e-12
Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 1

Query: 68  KNDIYDNQSRSGFKVMNSSTTRSLLHGCSCRLPTKWRGMDGVRGPVLSGTGYLLRRKALF 127
           KNDIYDNQ+RS +++                   KW+GM+G+RGP LSGTG+ L+RKAL+
Sbjct: 328 KNDIYDNQARSAYRI-------------------KWQGMNGIRGPSLSGTGFYLKRKALY 387

Query: 128 WNPNQEERFDSEPQKALGRSQKFID 153
            +PN E++   EPQ + G S KF D
Sbjct: 388 GSPNFEDKHLFEPQSSFGMSSKFTD 393

BLAST of CmoCh08G010740 vs. TrEMBL
Match: M1AUM3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400011752 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.6e-12
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1

Query: 68  KNDIYDNQSRSGFKVMNSSTTRSLLHGCSCRLPTKWRGMDGVRGPVLSGTGYLLRRKALF 127
           K+DIYD + R  +K                   T W GMDG++GPVLSGTGY L+RKAL+
Sbjct: 333 KSDIYDVKIRQAYK-------------------TIWHGMDGIQGPVLSGTGYFLKRKALY 392

Query: 128 WNPNQEERFDSEPQKALGRSQKFIDSLNAKKEY 161
            +P  +E + S P+K  GRS+KF+ SL  K  Y
Sbjct: 393 TSPGVKEEYLSSPEKHFGRSKKFLASLEEKNGY 406

BLAST of CmoCh08G010740 vs. TrEMBL
Match: A0A0V0INZ5_SOLCH (Putative cellulose synthase-like protein G1-like OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.6e-12
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1

Query: 68  KNDIYDNQSRSGFKVMNSSTTRSLLHGCSCRLPTKWRGMDGVRGPVLSGTGYLLRRKALF 127
           K+DIYD + R  +K                   T W GMDG++GPVLSGTGY L+RKAL+
Sbjct: 333 KSDIYDVKIRQAYK-------------------TIWHGMDGIQGPVLSGTGYFLKRKALY 392

Query: 128 WNPNQEERFDSEPQKALGRSQKFIDSLNAKKEY 161
            +P  +E + S P+K  GRS+KF+ SL  K  Y
Sbjct: 393 TSPGVKEEYLSSPEKHFGRSKKFLASLEEKNGY 406

BLAST of CmoCh08G010740 vs. NCBI nr
Match: gi|731322862|ref|XP_010672125.1| (PREDICTED: cellulose synthase-like protein G2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 88.2 bits (217), Expect = 2.3e-14
Identity = 47/108 (43.52%), Postives = 64/108 (59.26%), Query Frame = 1

Query: 66  TLKNDIYDNQSRSGFKVMNSSTTRSLLHGCSCRLPTKWRGMDGVRGPVLSGTGYLLRRKA 125
           T KNDIYD Q+RS +K                   TKW+GMDG+RGPVL+GTGY L+RKA
Sbjct: 322 TSKNDIYDGQARSAYK-------------------TKWQGMDGIRGPVLTGTGYYLKRKA 381

Query: 126 LFWNPNQEERF-DSEPQKALGRSQKFIDSLNAKKEYQCVSAAMQRMEL 173
           L+  P+ E+ F  ++P+KA G S KFI S+++  +       M R +L
Sbjct: 382 LYGQPHNEDEFLINQPEKAFGSSTKFIASVSSNSKQNMALKEMTRDDL 410

BLAST of CmoCh08G010740 vs. NCBI nr
Match: gi|902217664|gb|KNA17850.1| (hypothetical protein SOVF_076690 [Spinacia oleracea])

HSP 1 Score: 81.6 bits (200), Expect = 2.1e-12
Identity = 45/106 (42.45%), Postives = 58/106 (54.72%), Query Frame = 1

Query: 68  KNDIYDNQSRSGFKVMNSSTTRSLLHGCSCRLPTKWRGMDGVRGPVLSGTGYLLRRKALF 127
           KNDIYD Q+RS                      TKW+GMDG+RGPVL+GTGY L+RKALF
Sbjct: 324 KNDIYDGQARSAHM-------------------TKWKGMDGLRGPVLNGTGYYLKRKALF 383

Query: 128 WNPNQEERF-DSEPQKALGRSQKFIDSLNAKKEYQCVSAAMQRMEL 173
             PN E+ + +S+P+KA G S K I +L    +       +   EL
Sbjct: 384 GKPNNEDEYLNSQPEKAFGSSTKLIAALRENSKQNLAIKELTEDEL 410

BLAST of CmoCh08G010740 vs. NCBI nr
Match: gi|747087251|ref|XP_011091159.1| (PREDICTED: cellulose synthase-like protein G3 [Sesamum indicum])

HSP 1 Score: 81.6 bits (200), Expect = 2.1e-12
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = 1

Query: 68  KNDIYDNQSRSGFKVMNSSTTRSLLHGCSCRLPTKWRGMDGVRGPVLSGTGYLLRRKALF 127
           KNDIYD Q+RS +K                   TK++GMDG++G V +GTGY L++KAL+
Sbjct: 349 KNDIYDGQARSAYK-------------------TKYQGMDGIKGTVCAGTGYFLKKKALY 408

Query: 128 WNPNQEERFDSEPQKALGRSQKFIDSLNA 157
            +PNQE+ F  EP+K  G S + IDSL A
Sbjct: 409 CSPNQEDEFLEEPEKNFGFSTQLIDSLQA 418

BLAST of CmoCh08G010740 vs. NCBI nr
Match: gi|590659056|ref|XP_007035023.1| (Cellulose synthase, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 80.9 bits (198), Expect = 3.6e-12
Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 1

Query: 68  KNDIYDNQSRSGFKVMNSSTTRSLLHGCSCRLPTKWRGMDGVRGPVLSGTGYLLRRKALF 127
           KNDIYDNQ+RS +++                   KW+GM+G+RGP LSGTG+ L+RKAL+
Sbjct: 328 KNDIYDNQARSAYRI-------------------KWQGMNGIRGPSLSGTGFYLKRKALY 387

Query: 128 WNPNQEERFDSEPQKALGRSQKFID 153
            +PN E++   EPQ + G S KF D
Sbjct: 388 GSPNFEDKHLFEPQSSFGMSSKFTD 393

BLAST of CmoCh08G010740 vs. NCBI nr
Match: gi|565383134|ref|XP_006357878.1| (PREDICTED: cellulose synthase-like protein G1 [Solanum tuberosum])

HSP 1 Score: 79.7 bits (195), Expect = 8.1e-12
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1

Query: 68  KNDIYDNQSRSGFKVMNSSTTRSLLHGCSCRLPTKWRGMDGVRGPVLSGTGYLLRRKALF 127
           K+DIYD + R  +K                   T W GMDG++GPVLSGTGY L+RKAL+
Sbjct: 337 KSDIYDVKIRQAYK-------------------TIWHGMDGIQGPVLSGTGYFLKRKALY 396

Query: 128 WNPNQEERFDSEPQKALGRSQKFIDSLNAKKEY 161
            +P  +E + S P+K  GRS+KF+ SL  K  Y
Sbjct: 397 TSPGVKEEYLSSPEKHFGRSKKFLASLEEKNGY 410

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0J8CPJ7_BETVU1.6e-1443.52Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g056710 PE=3 S... [more]
A0A0K9REB7_SPIOL1.5e-1242.45Uncharacterized protein OS=Spinacia oleracea GN=SOVF_076690 PE=3 SV=1[more]
A0A061EUI9_THECC2.5e-1245.88Cellulose synthase, putative isoform 1 OS=Theobroma cacao GN=TCM_020810 PE=3 SV=... [more]
M1AUM3_SOLTU5.6e-1244.09Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400011752 PE=3 SV=1[more]
A0A0V0INZ5_SOLCH5.6e-1244.09Putative cellulose synthase-like protein G1-like OS=Solanum chacoense PE=3 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|731322862|ref|XP_010672125.1|2.3e-1443.52PREDICTED: cellulose synthase-like protein G2 [Beta vulgaris subsp. vulgaris][more]
gi|902217664|gb|KNA17850.1|2.1e-1242.45hypothetical protein SOVF_076690 [Spinacia oleracea][more]
gi|747087251|ref|XP_011091159.1|2.1e-1246.07PREDICTED: cellulose synthase-like protein G3 [Sesamum indicum][more]
gi|590659056|ref|XP_007035023.1|3.6e-1245.88Cellulose synthase, putative isoform 1 [Theobroma cacao][more]
gi|565383134|ref|XP_006357878.1|8.1e-1244.09PREDICTED: cellulose synthase-like protein G1 [Solanum tuberosum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G010740.1CmoCh08G010740.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR13301X-BOX TRANSCRIPTION FACTOR-RELATEDcoord: 100..171
score: 2.1E-19coord: 68..80
score: 2.1
NoneNo IPR availablePANTHERPTHR13301:SF62SUBFAMILY NOT NAMEDcoord: 100..171
score: 2.1E-19coord: 68..80
score: 2.1

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh08G010740Lsi09G012570Bottle gourd (USVL1VR-Ls)cmolsiB797
CmoCh08G010740Cla97C06G116370Watermelon (97103) v2cmowmbB896
CmoCh08G010740Bhi12G001463Wax gourdcmowgoB1084
CmoCh08G010740Carg10947Silver-seed gourdcarcmoB1452
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh08G010740Cucumber (Chinese Long) v3cmocucB1026
CmoCh08G010740Cucumber (Chinese Long) v3cmocucB1032
CmoCh08G010740Cucumber (Chinese Long) v3cmocucB1070
CmoCh08G010740Watermelon (97103) v2cmowmbB886
CmoCh08G010740Watermelon (97103) v2cmowmbB920
CmoCh08G010740Wax gourdcmowgoB1101
CmoCh08G010740Cucurbita moschata (Rifu)cmocmoB233
CmoCh08G010740Cucurbita moschata (Rifu)cmocmoB310
CmoCh08G010740Cucurbita moschata (Rifu)cmocmoB484
CmoCh08G010740Cucumber (Gy14) v1cgycmoB1059
CmoCh08G010740Cucurbita maxima (Rimu)cmacmoB279
CmoCh08G010740Cucurbita maxima (Rimu)cmacmoB365
CmoCh08G010740Cucurbita maxima (Rimu)cmacmoB537
CmoCh08G010740Cucurbita maxima (Rimu)cmacmoB837
CmoCh08G010740Cucurbita maxima (Rimu)cmacmoB912
CmoCh08G010740Wild cucumber (PI 183967)cmocpiB879
CmoCh08G010740Wild cucumber (PI 183967)cmocpiB883
CmoCh08G010740Cucumber (Chinese Long) v2cmocuB868
CmoCh08G010740Cucumber (Chinese Long) v2cmocuB872
CmoCh08G010740Melon (DHL92) v3.5.1cmomeB832
CmoCh08G010740Melon (DHL92) v3.5.1cmomeB828
CmoCh08G010740Watermelon (Charleston Gray)cmowcgB792
CmoCh08G010740Watermelon (Charleston Gray)cmowcgB799
CmoCh08G010740Watermelon (Charleston Gray)cmowcgB808
CmoCh08G010740Watermelon (97103) v1cmowmB853
CmoCh08G010740Watermelon (97103) v1cmowmB856
CmoCh08G010740Watermelon (97103) v1cmowmB867
CmoCh08G010740Cucurbita pepo (Zucchini)cmocpeB833
CmoCh08G010740Cucurbita pepo (Zucchini)cmocpeB849
CmoCh08G010740Cucurbita pepo (Zucchini)cmocpeB853
CmoCh08G010740Cucurbita pepo (Zucchini)cmocpeB862
CmoCh08G010740Cucurbita pepo (Zucchini)cmocpeB866
CmoCh08G010740Bottle gourd (USVL1VR-Ls)cmolsiB823
CmoCh08G010740Cucumber (Gy14) v2cgybcmoB254
CmoCh08G010740Cucumber (Gy14) v2cgybcmoB421
CmoCh08G010740Cucumber (Gy14) v2cgybcmoB959
CmoCh08G010740Melon (DHL92) v3.6.1cmomedB935
CmoCh08G010740Melon (DHL92) v3.6.1cmomedB940
CmoCh08G010740Silver-seed gourdcarcmoB0326
CmoCh08G010740Silver-seed gourdcarcmoB0333
CmoCh08G010740Silver-seed gourdcarcmoB1025
CmoCh08G010740Silver-seed gourdcarcmoB1289