CmoCh08G009650 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh08G009650
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr08 : 6264647 .. 6265103 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTCCCGAAGGTTTCCGGTGGAAATTATGTGATTCCGTCTCTCTTCTTCGCTGGAGTTTTCGCTTTATGCATCTGGTCTTCCTCTGTTTCCAATCCTTTCATTCTTCTTTCCAACGGACGCCATTGCAGCAACACGAAGCTTCAAAATCAGGTCTCAGTCGCGTAATCGCATTCTATTTTCTCTATGTTCTTTTTTGTTTTTGATTAACTTGAATTGATTGTGCGTTGTTCTGGATCAATTGTTGGAGAGTACTACTTGTGATTTTGATTCGGTTGCGTAATCGCAGGGAATCGTCTATTTTCGACATTTTTGTGTGATTTAGAGTTGATTGTGAAGTCGCTCTGGATTAATGCTGCAGAATGTACTAGCGATCTCGATTCTGTTGCAGATTTTGTGTAATTTTGCATTAGTTGCTAGTGGCTTTGATTCTGTTGATATTGGACATGATTAA

mRNA sequence

ATGGATTTCCCGAAGGTTTCCGGTGGAAATTATGTGATTCCGTCTCTCTTCTTCGCTGGAGTTTTCGCTTTATGCATCTGGTCTTCCTCTGTTTCCAATCCTTTCATTCTTCTTTCCAACGGACGCCATTGCAGCAACACGAAGCTTCAAAATCAGGTCTCAGTCGCTCGCTCTGGATTAATGCTGCAGAATGTACTAGCGATCTCGATTCTGTTGCAGATTTTGTGTAATTTTGCATTAGTTGCTAGTGGCTTTGATTCTGTTGATATTGGACATGATTAA

Coding sequence (CDS)

ATGGATTTCCCGAAGGTTTCCGGTGGAAATTATGTGATTCCGTCTCTCTTCTTCGCTGGAGTTTTCGCTTTATGCATCTGGTCTTCCTCTGTTTCCAATCCTTTCATTCTTCTTTCCAACGGACGCCATTGCAGCAACACGAAGCTTCAAAATCAGGTCTCAGTCGCTCGCTCTGGATTAATGCTGCAGAATGTACTAGCGATCTCGATTCTGTTGCAGATTTTGTGTAATTTTGCATTAGTTGCTAGTGGCTTTGATTCTGTTGATATTGGACATGATTAA
Homology
[Close]
BLAST of CmoCh08G009650 vs. TrEMBL
Match: A0A0A0LHW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G140360 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.7e-12
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 1 

Query: 1  MDFPKVSGGNYVIPSLFFAGVFALCIWSSSVSNPFILLSNGRHCSNTKLQNQVSVA 57
          MDFPKVS GNYVIPSL FAG+   CI +SSV +PF  LSNGR CS+TKL NQ S +
Sbjct: 1  MDFPKVSAGNYVIPSLLFAGILLFCITASSVLSPFPFLSNGRQCSSTKLPNQNSTS 56

[Close]
BLAST of CmoCh08G009650 vs. NCBI nr
Match: gi|449442485|ref|XP_004139012.1| (PREDICTED: uncharacterized protein At1g28695 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 3.8e-12
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 1 

Query: 1  MDFPKVSGGNYVIPSLFFAGVFALCIWSSSVSNPFILLSNGRHCSNTKLQNQVSVA 57
          MDFPKVS GNYVIPSL FAG+   CI +SSV +PF  LSNGR CS+TKL NQ S +
Sbjct: 1  MDFPKVSAGNYVIPSLLFAGILLFCITASSVLSPFPFLSNGRQCSSTKLPNQNSTS 56

[Close]
BLAST of CmoCh08G009650 vs. NCBI nr
Match: gi|659114781|ref|XP_008457224.1| (PREDICTED: uncharacterized protein At1g28695-like isoform X1 [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 9.4e-11
Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = 1 

Query: 1  MDFPKVSGGNYVIPSLFFAGVFALCIWSSSVSNPFILLSNGRHCSNTKLQNQVSVA 57
          MDFPKVS GNYVIPSL FAG+   CI +SSV NPF  +SNGR CS  K+ N  S +
Sbjct: 1  MDFPKVSAGNYVIPSLLFAGILLFCITASSVLNPFPFISNGRQCSRPKVPNHNSTS 56

[Close]
BLAST of CmoCh08G009650 vs. NCBI nr
Match: gi|659114783|ref|XP_008457225.1| (PREDICTED: uncharacterized protein At1g28695-like isoform X2 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 8.0e-10
Identity = 33/48 (68.75%), Postives = 36/48 (75.00%), Query Frame = 1 

Query: 1  MDFPKVSGGNYVIPSLFFAGVFALCIWSSSVSNPFILLSNGRHCSNTK 49
          MDFPKVS GNYVIPSL FAG+   CI +SSV NPF  +SNGR CS  K
Sbjct: 1  MDFPKVSAGNYVIPSLLFAGILLFCITASSVLNPFPFISNGRQCSRPK 48

The following BLAST results are available for this feature:
BLAST of CmoCh08G009650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh08G009650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHW1_CUCSA2.7e-1267.86Uncharacterized protein OS=Cucumis sativus GN=Csa_2G140360 PE=4 SV=1[more]
BLAST of CmoCh08G009650 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh08G009650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449442485|ref|XP_004139012.1|3.8e-1267.86PREDICTED: uncharacterized protein At1g28695 [Cucumis sativus][more]
gi|659114781|ref|XP_008457224.1|9.4e-1162.50PREDICTED: uncharacterized protein At1g28695-like isoform X1 [Cucumis melo][more]
gi|659114783|ref|XP_008457225.1|8.0e-1068.75PREDICTED: uncharacterized protein At1g28695-like isoform X2 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G009650.1CmoCh08G009650.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh08G009650Cp4.1LG17g02890Cucurbita pepo (Zucchini)cmocpeB853
CmoCh08G009650MELO3C020434.2Melon (DHL92) v3.6.1cmomedB934
CmoCh08G009650CsaV3_2G011660Cucumber (Chinese Long) v3cmocucB1028
CmoCh08G009650Cla97C06G117630Watermelon (97103) v2cmowmbB893
CmoCh08G009650Bhi12G001289Wax gourdcmowgoB1095
CmoCh08G009650Carg11051Silver-seed gourdcarcmoB1452
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh08G009650Cucurbita pepo (Zucchini)cmocpeB833
CmoCh08G009650Cucurbita pepo (Zucchini)cmocpeB860
CmoCh08G009650Bottle gourd (USVL1VR-Ls)cmolsiB820
CmoCh08G009650Cucumber (Gy14) v2cgybcmoB428
CmoCh08G009650Melon (DHL92) v3.6.1cmomedB943
CmoCh08G009650Silver-seed gourdcarcmoB0326
CmoCh08G009650Silver-seed gourdcarcmoB0854
CmoCh08G009650Silver-seed gourdcarcmoB1289
CmoCh08G009650Cucumber (Chinese Long) v3cmocucB1039
CmoCh08G009650Watermelon (97103) v2cmowmbB890
CmoCh08G009650Cucurbita moschata (Rifu)cmocmoB230
CmoCh08G009650Cucurbita moschata (Rifu)cmocmoB233
CmoCh08G009650Cucurbita moschata (Rifu)cmocmoB310
CmoCh08G009650Cucurbita moschata (Rifu)cmocmoB484
CmoCh08G009650Cucumber (Gy14) v1cgycmoB0719
CmoCh08G009650Cucurbita maxima (Rimu)cmacmoB279
CmoCh08G009650Cucurbita maxima (Rimu)cmacmoB365
CmoCh08G009650Cucurbita maxima (Rimu)cmacmoB837
CmoCh08G009650Cucurbita maxima (Rimu)cmacmoB912
CmoCh08G009650Watermelon (Charleston Gray)cmowcgB792
CmoCh08G009650Watermelon (97103) v1cmowmB856