CmoCh08G009580 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G009580
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	SWIb domain-containing protein
Location	Cmo_Chr08 : 6217516 .. 6220884 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCAGGTCTTAACAATGGCACTAGGTTATTCAGAGGTTGCAGAACCCTCTTAGATTCACTCAAGTCTACCACTCAAGCTTACTCTTCTGCGGCTGCGGTTTCTCCCAAGGGGGAGATAAAAACTTCAGGTGTCGCTGCTTCCCGCAAAAAATCGGAAGCCGGAGAGAAGAAAGAGGGGAATCGTTTGGGGGGGATTCTTAAGTCCGTCCAGGTTTCTCCGGCTCTCGCTGGCTTCCTCGGCATGTCAGAGTCTTCGCGTCCTGAAGCCGTCAAACAAATATGGTCCTACATCAAGCTGAATAATCTCCAGGTTCTTTTCATTTCTCTGTTGTTTTTTGCTGATATGGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTGTGTTGTTGCTCTAGTTCCTTGTTTCCTGCCGCCTGTTCGTTTGCCTCGTTAATTTCTCCTTCATTTTGTTGAGATTGCCTTGAAAGTTGATTTTAACTCATCTTAGAGCTTGAAATTTTGGATGTAGTGTTGGTTTCATATAGTTTCTTCCCGTTGTGGGTAAACGGGAAACCCGACTCTACGAACCCGAGGAAAGGCTGCTTAGTTGCTGAATCTAAGGCCCATGAAATGGAAGTTCTGAATTCGAAAAATAGGTTAATTTATAGGGAAACTCCCACTGTTAGTTCACGAACCAAATAATTCTCAAGTCTTGGCGATCGAATTTGTAATTTATTAGATGAACATGGAGCATCTATACCCTCTGTTCCCAAGTTTTATCTACCTTGTATAATCAACAAGCTATTTTGGCCATAAATGCATTTATTGTCACATGGATTTGGGTTTGTGCCCTTCTTCAAAAAAGTTAGCTGCTACTCAGAGGTGGGAGCTCCTACCTAAATCCCTGTCCAATATTTTTTAGGAAAGCCACCCTGATATCCAATTTTGAGTGTAAAAAATACTTTCATTGAAGTTCATAAAGGCTAAACCAGGCTTTGATGCCTCTTGATCAACTTAATGGATATGTTTGCTATGGGTTCTGAAGGGTGTGCGAGTATGCACTGATAATCTAGCCGAAAGAAGCTTCTCCCACCTTGACCCTGTAATGTGAACAATTTTTCTTTTAATTGTATATTTGGTCAGTATGATTCGAAGAATATTTGATTTTAGTTCTTGTGGTTTTGAAAGTTAGAATCTCGTCTTTATGGTTTCGTAAATAGTTTCTAAGATTTGATAAAATCTTCGTAAATAGTCTCTCTATTGAAGGGACTATTTAGGAATATTTTCTCAAACGATAGAGACTAAATTATAACTTTCGATCCTATGTAGAACAAGTTATGCAATAGTTCAGGTTAATAAATTAAAACTCAACATATTCTACAAATTAATAGTTTTTTTTTCTTTAAATATTTTTTTTGTAAGGGATAATTTCATTGATGTTTGAAGTTTACAATTTACAATGAGAAAGGTATAACTAGGAAGCGAAAATATTAGATAGGCTACACCAAGATATAGCTTGATAAACAACATTATCGAAGAGTTTTATATAAACCTAGGTCTTTTTCATGAAAATTCTTTGATTTCTTTCTTTCCACTGATCTATAAGAAAGCCATGATGAATTATCATTCTCGAAAGAAGGGTACCATGTACAAATTAGTGGTTGTAGTAGTAGTTGCCTGCCACATCTAACCAATTTAGTCAACATTTATCTGATGTGGTAGTCAAGCTAGTATCCTGTTAATGGTGTTAACTGTAGAAATTAACCTAGTAGTTCCTCTTTTCTTCCTTTTCTTTTTTATTTGGAAGACTTTGCTGATATATAACACACATTATGGTGTGCAGAACCCAGCTAATAAGAGGCAGATCAATTGTGATGAAAAGCTAAAGGCCATATTTGATGGAAGAGAGAATGTGGGGATCTTAGAGATCGGAAAATTGCTATCCCCTCACTTTGTGAAGTCGTCTAGTTAA

mRNA sequence

ATGGCGTCAGGTCTTAACAATGGCACTAGGTTATTCAGAGGTTGCAGAACCCTCTTAGATTCACTCAAGTCTACCACTCAAGCTTACTCTTCTGCGGCTGCGGTTTCTCCCAAGGGGGAGATAAAAACTTCAGGTGTCGCTGCTTCCCGCAAAAAATCGGAAGCCGGAGAGAAGAAAGAGGGGAATCGTTTGGGGGGGATTCTTAAGTCCGTCCAGGTTTCTCCGGCTCTCGCTGGCTTCCTCGGCATGTCAGAGTCTTCGCGTCCTGAAGCCGTCAAACAAATATGGTCCTACATCAAGCTGAATAATCTCCAGAACCCAGCTAATAAGAGGCAGATCAATTGTGATGAAAAGCTAAAGGCCATATTTGATGGAAGAGAGAATGTGGGGATCTTAGAGATCGGAAAATTGCTATCCCCTCACTTTGTGAAGTCGTCTAGTTAA

Coding sequence (CDS)

ATGGCGTCAGGTCTTAACAATGGCACTAGGTTATTCAGAGGTTGCAGAACCCTCTTAGATTCACTCAAGTCTACCACTCAAGCTTACTCTTCTGCGGCTGCGGTTTCTCCCAAGGGGGAGATAAAAACTTCAGGTGTCGCTGCTTCCCGCAAAAAATCGGAAGCCGGAGAGAAGAAAGAGGGGAATCGTTTGGGGGGGATTCTTAAGTCCGTCCAGGTTTCTCCGGCTCTCGCTGGCTTCCTCGGCATGTCAGAGTCTTCGCGTCCTGAAGCCGTCAAACAAATATGGTCCTACATCAAGCTGAATAATCTCCAGAACCCAGCTAATAAGAGGCAGATCAATTGTGATGAAAAGCTAAAGGCCATATTTGATGGAAGAGAGAATGTGGGGATCTTAGAGATCGGAAAATTGCTATCCCCTCACTTTGTGAAGTCGTCTAGTTAA

Homology

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BLAST of CmoCh08G009580 vs. Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.1e-11
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 1


Query: 42  KTSGVAASRKKSEAGEK--------KEGNRLGG------------ILKSVQVSPALAGFL 101
           KT G  A+   +E G+K        KE    GG            + K +++SP LA FL
Sbjct: 72  KTKGKRATENGTEEGKKPAKRTRKRKEDGEEGGKRKRNQDPANNPLNKPMKLSPKLAEFL 131

Query: 102 GMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFD 125
           G+ + SRP+ VK++W YIK ++LQ+P +KR I CD+KLK++F+
Sbjct: 132 GLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFE 174

[Close]

BLAST of CmoCh08G009580 vs. Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-10
Identity = 39/115 (33.91%), Postives = 63/115 (54.78%), Query Frame = 1


Query: 30  SSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRP 89
           S  ++   K + +T G    +KK    +     R       V +S +LA  LG  E +R 
Sbjct: 89  SKRSSGEEKNDSETKGTHVEKKKGTVSKSPISTR------KVTLSKSLASLLGEHELTRT 148

Query: 90  EAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVK 145
           E V+++W+YIK +NLQNP NK++I CDEKL+ I    ++  + E+ K+L+ H  +
Sbjct: 149 EVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG--KSTNMFEMHKILASHMTE 195

[Close]

BLAST of CmoCh08G009580 vs. Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-09
Identity = 35/100 (35.00%), Postives = 58/100 (58.00%), Query Frame = 1


Query: 42  KTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKL 101
           K    + S++K +  +  + N +   ++ V +S  L  FLG  E  R + VK IW YIK 
Sbjct: 97  KGKSESKSKRKKKKNDSPDSNSIS--VRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKE 156

Query: 102 NNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPH 142
           ++LQNP ++R+I CDEK++ IF   + + +  + KLL+ H
Sbjct: 157 HDLQNPKDRREILCDEKMEPIFG--KKMTMFSMNKLLTKH 192

[Close]

BLAST of CmoCh08G009580 vs. TrEMBL
Match: A0A0A0KCY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G078570 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 8.4e-45
Identity = 101/145 (69.66%), Postives = 112/145 (77.24%), Query Frame = 1


Query: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKE 60
           MASGL+NGTR F+GCRTLLDSLKSTTQAYSS   VS K  +K S  A S +KS+   KK 
Sbjct: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60

Query: 61  GNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 120
            N  GG+LK+ +VSP LAGFLG SE +R EAVKQIW YIKLNNLQNP +KRQI CD KLK
Sbjct: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120

Query: 121 AIFDGRENVGILEIGKLLSPHFVKS 146
           AIF GRE VG+LEI K LS HFVKS
Sbjct: 121 AIFGGREKVGMLEIPKFLSIHFVKS 145

[Close]

BLAST of CmoCh08G009580 vs. TrEMBL
Match: A0A0A0L3V0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126840 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.8e-32
Identity = 88/160 (55.00%), Postives = 110/160 (68.75%), Query Frame = 1


Query: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSA------AAVSPKGE---IKT------SG 60
           M+SG NNG R+FR CR LL   KS+    ++A      + + PK +   +KT      +G
Sbjct: 1   MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAG 60

Query: 61  VAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQ 120
           VAA+    E   KKE +R  GILK  QVSPAL+ FLG+SE+SR +AV QIWSYIKL+NLQ
Sbjct: 61  VAAT---PEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQ 120

Query: 121 NPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKS 146
           NP NKR+I CD+KLKAIF+GRE VG LEIGK L+ HFVK+
Sbjct: 121 NPDNKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 157

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BLAST of CmoCh08G009580 vs. TrEMBL
Match: M5XE20_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012921mg PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.5e-30
Identity = 78/147 (53.06%), Postives = 102/147 (69.39%), Query Frame = 1


Query: 6   NNGTRLFRGCRTLLDSLKSTTQ-------AYSSAAAVSPKGEIKTSGVAASRKKSEAGEK 65
           +N  R+FRGCR L+   +S++        A  +A A  PK + K    A  +  +++ + 
Sbjct: 4   SNVFRVFRGCRALMAPARSSSSTAGAAVSASKAATAAEPKPKAKPK--AKPKAAADSTKP 63

Query: 66  KEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEK 125
           K  NR  GI+K   +SPAL  FLG SESSR EAVKQIW++IKL+NLQNPANKR+I+CD+K
Sbjct: 64  KIPNRSLGIMKPTPISPALGSFLGASESSRAEAVKQIWAHIKLHNLQNPANKREIHCDDK 123

Query: 126 LKAIFDGRENVGILEIGKLLSPHFVKS 146
           LKAIF+G+E VG LEIGKLLS HFVK+
Sbjct: 124 LKAIFEGKEKVGFLEIGKLLSRHFVKT 148

[Close]

BLAST of CmoCh08G009580 vs. TrEMBL
Match: A0A059CED4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01092 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.2e-28
Identity = 73/138 (52.90%), Postives = 91/138 (65.94%), Query Frame = 1


Query: 9   TRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGIL 68
           +R+FRGCR LL   KS + A ++AA  +   +   +   A  K + A   K  +R  GI 
Sbjct: 11  SRVFRGCRALLAPAKSASSAAAAAAPPAAPAKASKAAAKAKPKAAAAAVPKAPSRPSGIQ 70

Query: 69  KSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDGREN 128
           K   VSPALA FL   E+SR EAVKQIW+YIK   LQ+  NKR+INCDE+LK +F+GRE 
Sbjct: 71  KVTPVSPALARFLNAGEASRVEAVKQIWAYIKKEGLQDSINKREINCDERLKTLFEGREK 130

Query: 129 VGILEIGKLLSPHFVKSS 147
           VG LEIGKLLS HFVK+S
Sbjct: 131 VGFLEIGKLLSRHFVKTS 148

[Close]

BLAST of CmoCh08G009580 vs. TrEMBL
Match: B9SDA4_RICCO (Brg-1 associated factor, putative OS=Ricinus communis GN=RCOM_1515600 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.6e-27
Identity = 76/138 (55.07%), Postives = 93/138 (67.39%), Query Frame = 1


Query: 9   TRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGIL 68
           +R+FRG R LL   KS   A ++AAA S     K S  AA + K +        R  GIL
Sbjct: 2   SRVFRGYRALLAPTKSAAAAAAAAAAPSKSTATKKSAAAAVKPKDKPV------RATGIL 61

Query: 69  KSVQVSPALAGFLG-MSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDGRE 128
           K+  VSPAL+ FLG + E+SR + VK+IW +IKL+NLQNP NK++I CDEKLK IFDG+E
Sbjct: 62  KAAPVSPALSEFLGGVPEASRTDVVKKIWDHIKLHNLQNPTNKKEIFCDEKLKTIFDGKE 121

Query: 129 NVGILEIGKLLSPHFVKS 146
            VG LEIGKLLS HFVKS
Sbjct: 122 KVGFLEIGKLLSRHFVKS 133

[Close]

BLAST of CmoCh08G009580 vs. TAIR10
Match: AT3G03590.1 (AT3G03590.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 117.5 bits (293), Expect = 7.1e-27
Identity = 66/137 (48.18%), Postives = 91/137 (66.42%), Query Frame = 1


Query: 11  LFRGCRTLL-DSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILK 70
           +FRG R+LL  + ++T+   S+ +   P  + K       + KS++  KK   R  GI K
Sbjct: 8   VFRGARSLLAPASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPAKKTP-RSTGIFK 67

Query: 71  SVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDGRENV 130
              VSP LA FLG  E+SR +A+K IW+YIK ++LQNPA+KR+I CDE LK IF+G++ V
Sbjct: 68  VTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDKV 127

Query: 131 GILEIGKLLSPHFVKSS 147
           G LEI KLLSPHFVK++
Sbjct: 128 GFLEISKLLSPHFVKTA 143

[Close]

BLAST of CmoCh08G009580 vs. TAIR10
Match: AT2G35605.1 (AT2G35605.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-24
Identity = 57/96 (59.38%), Postives = 68/96 (70.83%), Query Frame = 1


Query: 51  KKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANK 110
           K + +   K G +  GILK V VS  LA F+G +E SR  AVK+IW YIKLNNLQNP NK
Sbjct: 14  KAASSTGAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNK 73

Query: 111 RQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSS 147
           R+I CDE+LK IF G++ VG LEI KLLS HF KS+
Sbjct: 74  REILCDEQLKTIFSGKDTVGFLEISKLLSQHFPKSA 109

[Close]

BLAST of CmoCh08G009580 vs. TAIR10
Match: AT1G31760.1 (AT1G31760.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 104.8 bits (260), Expect = 4.8e-23
Identity = 53/91 (58.24%), Postives = 66/91 (72.53%), Query Frame = 1


Query: 55  AGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQIN 114
           AGE K      GI K+  VS  LA F G  E +R  A+K++W Y+KL+NLQNPANK++I+
Sbjct: 27  AGEGK------GIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIH 86

Query: 115 CDEKLKAIFDGRENVGILEIGKLLSPHFVKS 146
           CD+KLK IFDG++ VGI EI KLLSPHF KS
Sbjct: 87  CDDKLKTIFDGKDKVGITEIMKLLSPHFPKS 111

[Close]

BLAST of CmoCh08G009580 vs. TAIR10
Match: AT4G34290.1 (AT4G34290.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 92.4 bits (228), Expect = 2.4e-19
Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 1


Query: 43  TSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLN 102
           TS  AAS   +   + +E     GI+K   VS A+   +G+ E  R +A+K+IW+YIK +
Sbjct: 47  TSAAAASSDPTTTTKTREPR---GIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEH 106

Query: 103 NLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFV 144
           +LQ+P NKR I CDEKLK IF+G+E VG LEI KL+ PHF+
Sbjct: 107 DLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAKLIGPHFL 144

[Close]

BLAST of CmoCh08G009580 vs. TAIR10
Match: AT2G14880.1 (AT2G14880.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-18
Identity = 55/137 (40.15%), Postives = 80/137 (58.39%), Query Frame = 1


Query: 9   TRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRL--GG 68
           T  FR   T L SL+  +          P  +++   V A    +E+ E    N+    G
Sbjct: 16  TTSFRNPSTPLSSLRFASH---------PAAKLRL--VRAVTSATESSEPTATNKRVPRG 75

Query: 69  ILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDGR 128
           I+K   VSP +   + + E +R +A+K+IW+YIK ++LQ+P NKR+I CDEKLK IF+GR
Sbjct: 76  IMKPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGR 135

Query: 129 ENVGILEIGKLLSPHFV 144
           + VG LEI KL+ PHF+
Sbjct: 136 DRVGFLEIAKLIGPHFL 141

[Close]

BLAST of CmoCh08G009580 vs. NCBI nr
Match: gi|659120238|ref|XP_008460088.1| (PREDICTED: protein TRI1-like [Cucumis melo])

HSP 1 Score: 198.4 bits (503), Expect = 9.0e-48
Identity = 102/145 (70.34%), Postives = 117/145 (80.69%), Query Frame = 1


Query: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKE 60
           MASGL+NGTR FRGC+TLLDSLK TTQAYSS  AVS K ++K    A S +KS+A  K++
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 61  GNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 120
            N  GGI+KS++VSP LAGFLG SE SR +A+KQIWSYIKLNNLQN  +KRQINCD KLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 121 AIFDGRENVGILEIGKLLSPHFVKS 146
           AIF GRE VG+LEI K LSPHFVKS
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKS 145

[Close]

BLAST of CmoCh08G009580 vs. NCBI nr
Match: gi|449473955|ref|XP_004154030.1| (PREDICTED: upstream activation factor subunit UAF30-like [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 1.2e-44
Identity = 101/145 (69.66%), Postives = 112/145 (77.24%), Query Frame = 1


Query: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKE 60
           MASGL+NGTR F+GCRTLLDSLKSTTQAYSS   VS K  +K S  A S +KS+   KK 
Sbjct: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60

Query: 61  GNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 120
            N  GG+LK+ +VSP LAGFLG SE +R EAVKQIW YIKLNNLQNP +KRQI CD KLK
Sbjct: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120

Query: 121 AIFDGRENVGILEIGKLLSPHFVKS 146
           AIF GRE VG+LEI K LS HFVKS
Sbjct: 121 AIFGGREKVGMLEIPKFLSIHFVKS 145

[Close]

BLAST of CmoCh08G009580 vs. NCBI nr
Match: gi|659075536|ref|XP_008438197.1| (PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo])

HSP 1 Score: 146.0 bits (367), Expect = 5.3e-32
Identity = 84/159 (52.83%), Postives = 105/159 (66.04%), Query Frame = 1


Query: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAA--------------AVSPKGEIKTSGV 60
           M+SG NNG R+FR CRTLL   KS+    ++A                 +P   +  +GV
Sbjct: 1   MSSGFNNGLRVFRACRTLLAPSKSSATVPATAPKSKTTTKPKTKLPKVKTPPSSVAAAGV 60

Query: 61  AASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQN 120
           AA+    E   KK  +R  GILK  QVSPAL+ FLG+SE+SR +AV QIWSYIKL+NLQN
Sbjct: 61  AAT---PEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQN 120

Query: 121 PANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKS 146
           P NKR+I CD+KLKAIF+GRE V  LEIGK+L+ HFVK+
Sbjct: 121 PDNKREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN 156

[Close]

BLAST of CmoCh08G009580 vs. NCBI nr
Match: gi|449432287|ref|XP_004133931.1| (PREDICTED: upstream activation factor subunit spp27-like [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 6.9e-32
Identity = 88/160 (55.00%), Postives = 110/160 (68.75%), Query Frame = 1


Query: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSA------AAVSPKGE---IKT------SG 60
           M+SG NNG R+FR CR LL   KS+    ++A      + + PK +   +KT      +G
Sbjct: 1   MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAG 60

Query: 61  VAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQ 120
           VAA+    E   KKE +R  GILK  QVSPAL+ FLG+SE+SR +AV QIWSYIKL+NLQ
Sbjct: 61  VAAT---PEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQ 120

Query: 121 NPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKS 146
           NP NKR+I CD+KLKAIF+GRE VG LEIGK L+ HFVK+
Sbjct: 121 NPDNKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 157

[Close]

BLAST of CmoCh08G009580 vs. NCBI nr
Match: gi|645252623|ref|XP_008232208.1| (PREDICTED: upstream activation factor subunit spp27-like [Prunus mume])

HSP 1 Score: 141.4 bits (355), Expect = 1.3e-30
Identity = 78/147 (53.06%), Postives = 105/147 (71.43%), Query Frame = 1


Query: 6   NNGTRLFRGCRTLLDSLKSTTQ-------AYSSAAAVSPKGEIKTSGVAASRKKSEAGEK 65
           +N  R+FRGCR L+   +S++        A  +A A  PK + KT   A ++  +++ + 
Sbjct: 4   SNVFRVFRGCRALMAPARSSSSTAGAAVSASKAATAAEPKPKAKTK--AKAKAAADSTKP 63

Query: 66  KEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEK 125
           K  NR  GI+K + +SPAL  FLG SESSR EAVKQIW++IKL+NLQNPANK++I+CD+K
Sbjct: 64  KIPNRSLGIMKPMPISPALGSFLGASESSRAEAVKQIWAHIKLHNLQNPANKKEIHCDDK 123

Query: 126 LKAIFDGRENVGILEIGKLLSPHFVKS 146
           LKAIF+G+E VG LEIGKLLS HFVK+
Sbjct: 124 LKAIFEGKEKVGFLEIGKLLSRHFVKT 148

The following BLAST results are available for this feature:

BLAST of CmoCh08G009580 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UAF30_SCHPO	5.1e-11	38.83	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
UAF30_YEAST	1.9e-10	33.91	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
TRI1_YEAST	2.2e-09	35.00	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE...	[more]

BLAST of CmoCh08G009580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCY9_CUCSA	8.4e-45	69.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G078570 PE=4 SV=1	[more]
A0A0A0L3V0_CUCSA	4.8e-32	55.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126840 PE=4 SV=1	[more]
M5XE20_PRUPE	4.5e-30	53.06	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012921mg PE=4 SV=1	[more]
A0A059CED4_EUCGR	4.2e-28	52.90	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01092 PE=4 SV=1	[more]
B9SDA4_RICCO	4.6e-27	55.07	Brg-1 associated factor, putative OS=Ricinus communis GN=RCOM_1515600 PE=4 SV=1	[more]

BLAST of CmoCh08G009580 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03590.1	7.1e-27	48.18	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	1.1e-24	59.38	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	4.8e-23	58.24	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	2.4e-19	48.51	SWIB/MDM2 domain superfamily protein	[more]
AT2G14880.1	1.6e-18	40.15	SWIB/MDM2 domain superfamily protein	[more]

BLAST of CmoCh08G009580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120238\|ref\|XP_008460088.1\|	9.0e-48	70.34	PREDICTED: protein TRI1-like [Cucumis melo]	[more]
gi\|449473955\|ref\|XP_004154030.1\|	1.2e-44	69.66	PREDICTED: upstream activation factor subunit UAF30-like [Cucumis sativus]	[more]
gi\|659075536\|ref\|XP_008438197.1\|	5.3e-32	52.83	PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo]	[more]
gi\|449432287\|ref\|XP_004133931.1\|	6.9e-32	55.00	PREDICTED: upstream activation factor subunit spp27-like [Cucumis sativus]	[more]
gi\|645252623\|ref\|XP_008232208.1\|	1.3e-30	53.06	PREDICTED: upstream activation factor subunit spp27-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003121	SWIB_MDM2_domain
IPR019835	SWIB_domain

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G009580.1	CmoCh08G009580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003121	SWIB/MDM2 domain	GENE3D	G3DSA:1.10.245.10		coord: 60..145 score: 1.4
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 70..142 score: 7.6
IPR003121	SWIB/MDM2 domain	unknown	SSF47592	SWIB/MDM2 domain	coord: 64..144 score: 1.5
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 67..147 score: 2.2
None	No IPR available	PANTHER	PTHR13844	BRG-1 ASSOCIATED FACTOR 60 BAF60	coord: 43..145 score: 8.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh08G009580	Bottle gourd (USVL1VR-Ls)	cmolsiB799
CmoCh08G009580	Bottle gourd (USVL1VR-Ls)	cmolsiB820
CmoCh08G009580	Cucumber (Gy14) v2	cgybcmoB428
CmoCh08G009580	Cucumber (Gy14) v2	cgybcmoB856
CmoCh08G009580	Melon (DHL92) v3.6.1	cmomedB905
CmoCh08G009580	Melon (DHL92) v3.6.1	cmomedB943
CmoCh08G009580	Silver-seed gourd	carcmoB0324
CmoCh08G009580	Silver-seed gourd	carcmoB0326
CmoCh08G009580	Silver-seed gourd	carcmoB0854
CmoCh08G009580	Silver-seed gourd	carcmoB1289
CmoCh08G009580	Silver-seed gourd	carcmoB1452
CmoCh08G009580	Cucumber (Chinese Long) v3	cmocucB1039
CmoCh08G009580	Cucumber (Chinese Long) v3	cmocucB1057
CmoCh08G009580	Watermelon (97103) v2	cmowmbB890
CmoCh08G009580	Watermelon (97103) v2	cmowmbB898
CmoCh08G009580	Wax gourd	cmowgoB1087
CmoCh08G009580	Cucurbita moschata (Rifu)	cmocmoB230
CmoCh08G009580	Cucurbita moschata (Rifu)	cmocmoB233
CmoCh08G009580	Cucurbita moschata (Rifu)	cmocmoB325
CmoCh08G009580	Cucurbita moschata (Rifu)	cmocmoB484
CmoCh08G009580	Cucumber (Gy14) v1	cgycmoB0719
CmoCh08G009580	Cucumber (Gy14) v1	cgycmoB1008
CmoCh08G009580	Cucurbita maxima (Rimu)	cmacmoB278
CmoCh08G009580	Cucurbita maxima (Rimu)	cmacmoB279
CmoCh08G009580	Cucurbita maxima (Rimu)	cmacmoB365
CmoCh08G009580	Cucurbita maxima (Rimu)	cmacmoB381
CmoCh08G009580	Cucurbita maxima (Rimu)	cmacmoB837
CmoCh08G009580	Cucurbita maxima (Rimu)	cmacmoB912
CmoCh08G009580	Wild cucumber (PI 183967)	cmocpiB889
CmoCh08G009580	Wild cucumber (PI 183967)	cmocpiB905
CmoCh08G009580	Cucumber (Chinese Long) v2	cmocuB878
CmoCh08G009580	Cucumber (Chinese Long) v2	cmocuB892
CmoCh08G009580	Melon (DHL92) v3.5.1	cmomeB802
CmoCh08G009580	Melon (DHL92) v3.5.1	cmomeB834
CmoCh08G009580	Watermelon (Charleston Gray)	cmowcgB792
CmoCh08G009580	Watermelon (Charleston Gray)	cmowcgB794
CmoCh08G009580	Watermelon (Charleston Gray)	cmowcgB801
CmoCh08G009580	Watermelon (97103) v1	cmowmB856
CmoCh08G009580	Watermelon (97103) v1	cmowmB858
CmoCh08G009580	Watermelon (97103) v1	cmowmB870
CmoCh08G009580	Cucurbita pepo (Zucchini)	cmocpeB833
CmoCh08G009580	Cucurbita pepo (Zucchini)	cmocpeB844
CmoCh08G009580	Cucurbita pepo (Zucchini)	cmocpeB853
CmoCh08G009580	Cucurbita pepo (Zucchini)	cmocpeB860