CmoCh08G009280 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh08G009280
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr08 : 6045373 .. 6045881 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGTATCAATAAGGCATTGTAGTTAAACATGTAAATAAATACAGTAGCAAGGTTTATGTGTTAACTATTTTTAAAATATTAGATAATTTTTAGTGAAAATTATTCTGTTTTTGTGTTTCCTAAAAGTTCGGGAGCTTCCCTCAAGTAAATTTTATTGAACATTATTAATTTGATATAATAATATAGGATTAATTTAAATTTTAGAATAAGTGTAATAGGCGAATGGACTTTTGTTTTGGGCCTTCAAAGTGGTCGGCCCATTAAGAATCTTCAAGTTCCCACATCGGCGAAGTCAGAAATTGGCACACGAGCTTGAGGTATAAAATGGTATCTCGTGGCATCTTTTAAGGCACGGAGCCGGGCGGTGAGCACAGAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCACTCCGCGCGCACCGGCATACGCCTATTTTTGGAGGGGTTTCTTTTCATAAAGAAACTCCCACAACTCGGTTCAAATTTTTGGTACTAA

mRNA sequence

ATGAATGCGAATGGACTTTTGTTTTGGGCCTTCAAAGTGGTCGGCCCATTAAGAATCTTCAAGTTCCCACATCGGCGAAGTCAGAAATTGGCACACGAGCTTGAGGCACGGAGCCGGGCGGTGAGCACAGAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCACTCCGCGCGCACCGGCATACGCCTATTTTTGGAGGGGTTTCTTTTCATAAAGAAACTCCCACAACTCGGTTCAAATTTTTGGTACTAA

Coding sequence (CDS)

ATGAATGCGAATGGACTTTTGTTTTGGGCCTTCAAAGTGGTCGGCCCATTAAGAATCTTCAAGTTCCCACATCGGCGAAGTCAGAAATTGGCACACGAGCTTGAGGCACGGAGCCGGGCGGTGAGCACAGAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCACTCCGCGCGCACCGGCATACGCCTATTTTTGGAGGGGTTTCTTTTCATAAAGAAACTCCCACAACTCGGTTCAAATTTTTGGTACTAA
Homology
[Close]
BLAST of CmoCh08G009280 vs. TrEMBL
Match: A0A0D2UXN6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G243800 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-07
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 34  LEARSRAVSTERTILSPFTKEYRVHSARTGIRLFLEGFLFIKKLPQLGSN 84
           +++RSRAVSTERTILSPFTKEYRV +A +GIRLFLE +   +  P   S+
Sbjct: 53  VKSRSRAVSTERTILSPFTKEYRVLAAYSGIRLFLEAYFLFRNGPSSSSS 102

[Close]
BLAST of CmoCh08G009280 vs. TrEMBL
Match: A5AF12_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004037 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-06
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 35 EARSRAVSTERTILSPFTKEYRVHSARTGIRLFLEG 71
          ++RSRAVST+RTILSPFTKEYRV +A +GIRLFLEG
Sbjct: 14 KSRSRAVSTKRTILSPFTKEYRVRAASSGIRLFLEG 49

[Close]
BLAST of CmoCh08G009280 vs. NCBI nr
Match: gi|763806751|gb|KJB73689.1| (hypothetical protein B456_011G243800 [Gossypium raimondii])

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-07
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 34  LEARSRAVSTERTILSPFTKEYRVHSARTGIRLFLEGFLFIKKLPQLGSN 84
           +++RSRAVSTERTILSPFTKEYRV +A +GIRLFLE +   +  P   S+
Sbjct: 53  VKSRSRAVSTERTILSPFTKEYRVLAAYSGIRLFLEAYFLFRNGPSSSSS 102

[Close]
BLAST of CmoCh08G009280 vs. NCBI nr
Match: gi|147817638|emb|CAN64497.1| (hypothetical protein VITISV_004037 [Vitis vinifera])

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-06
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 35 EARSRAVSTERTILSPFTKEYRVHSARTGIRLFLEG 71
          ++RSRAVST+RTILSPFTKEYRV +A +GIRLFLEG
Sbjct: 14 KSRSRAVSTKRTILSPFTKEYRVRAASSGIRLFLEG 49

The following BLAST results are available for this feature:
BLAST of CmoCh08G009280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh08G009280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2UXN6_GOSRA1.8e-0762.00Uncharacterized protein OS=Gossypium raimondii GN=B456_011G243800 PE=4 SV=1[more]
A5AF12_VITVI1.6e-0680.56Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004037 PE=4 SV=1[more]
BLAST of CmoCh08G009280 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh08G009280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|763806751|gb|KJB73689.1|2.6e-0762.00hypothetical protein B456_011G243800 [Gossypium raimondii][more]
gi|147817638|emb|CAN64497.1|2.2e-0680.56hypothetical protein VITISV_004037 [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G009280.1CmoCh08G009280.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh08G009280Cucurbita moschata (Rifu)cmocmoB235
CmoCh08G009280Cucurbita moschata (Rifu)cmocmoB297
CmoCh08G009280Cucurbita moschata (Rifu)cmocmoB314
CmoCh08G009280Cucumber (Gy14) v1cgycmoB1013
CmoCh08G009280Cucurbita maxima (Rimu)cmacmoB281
CmoCh08G009280Cucurbita maxima (Rimu)cmacmoB365
CmoCh08G009280Cucurbita maxima (Rimu)cmacmoB912
CmoCh08G009280Wild cucumber (PI 183967)cmocpiB893
CmoCh08G009280Cucumber (Chinese Long) v2cmocuB880
CmoCh08G009280Melon (DHL92) v3.5.1cmomeB806
CmoCh08G009280Melon (DHL92) v3.5.1cmomeB835
CmoCh08G009280Watermelon (Charleston Gray)cmowcgB796
CmoCh08G009280Watermelon (97103) v1cmowmB859
CmoCh08G009280Watermelon (97103) v1cmowmB862
CmoCh08G009280Cucurbita pepo (Zucchini)cmocpeB833
CmoCh08G009280Cucurbita pepo (Zucchini)cmocpeB853
CmoCh08G009280Bottle gourd (USVL1VR-Ls)cmolsiB804
CmoCh08G009280Cucumber (Gy14) v2cgybcmoB846
CmoCh08G009280Melon (DHL92) v3.6.1cmomedB909
CmoCh08G009280Melon (DHL92) v3.6.1cmomedB944
CmoCh08G009280Silver-seed gourdcarcmoB0326
CmoCh08G009280Silver-seed gourdcarcmoB1452
CmoCh08G009280Cucumber (Chinese Long) v3cmocucB1041
CmoCh08G009280Cucumber (Chinese Long) v3cmocucB1047
CmoCh08G009280Watermelon (97103) v2cmowmbB892
CmoCh08G009280Wax gourdcmowgoB1099