CmoCh08G009270 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh08G009270
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr08 : 6043484 .. 6044909 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAACGGTATTCTGCCTAAATATTATTAGACACAGGTAATAAATAAGAGAATATTAAAGATTCGAGCCATAGAATTTCTGAATTCTTACACAAGGTACTTGCAAGTCGGCATACATGTGCCATGCCAACCAATATTCTCCTTAATAATACATTCCCTAAGAAAAACACTAAAGATGCTATTGTCCTTGATAATACATTCCCTAAGAAAAACACTAAGATGCTCGCTCGTTTCACGCATACGTGTGCAACGAAGTAGCTCACTTCAAGTCATGATGCCCATCTTGGGAACAAACACTTCATTCATGCCACAGAAGCAGTGGAATTGATTTTGATTTGATTTAAAATTAAACAAAAGGACAAAGTTAAAGAAAACTCACTTCGAACAAATATGAAGAAAGTTTTAATGGTTTCCAATCTATTTGCTCTAGCTCTTCCAAGAGTTAAATCTTCGCAAACTCTTCCTCAAATACAATCTCGATGTATGCCAGAGTCTTTTTTAAAAAAAAAATTCTCAGCAAGAAAAAAAAAAAAAAGCCAAATATCTTTTCCAAAATAATAATTATGATTAAAAAATTTAGTTAAATTATACTTATAATATATTAAATACTCATCTGAATGGTTGAAATTATATATATATATATATATTCTTTTTTTTATTTCATATATCTAAAATTAAATGTTTTTTTTTTCTTTACCTTTGGTATATCAAATATTAATTTAAACACTTCAAAATTGTATTTCAATTAAATTTAACATCAATATAGATTTTAAGAACCAATAATATAAATTTAATTAATCAATTTCCGTTCCTTAACCATAAGTCACTATGTTATATATTTAGTTGCACTCTAGTGTAATATAGAACAAGTTGAATTTATTGATAGAATCATTACATGCATGTTATCATTTACAATTGTTCGTAAATACGGTTAGATGTTAAGTCAAAAGTTCGTTTTACTTTTGTTCTTTCGCTTTAAATGTCATTTCTCTAATTTACCATTTATTTATAATGGTTATAAGTATCTTTGGAGCTAGTAAATTGGTAGAAAATCAGTACCTAACAAAACTACTCGGTGCATAATAATATTAATAACCTCTAATAAATTTTATTGAACATTATTAATTTGATAATAATAACACGATTAATTTAAATTTTAGAATAAGTGTAATAGGCAAATGGACTTTTGTTTTGGGCCTTCAAAGTGGTCGGCCCATAAGATTCTTCAAGTTCCCACATCGGCCAAGTCAGAAATTGGGATACGAGCTTCAGGTATAAAGAGGTATCTCGTGGCTACGTCGTAGTCACGGAGCCGGGCGGTGAGCACAAAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCGCCGCACTCACCGGCATACGCCTATTTTTGGAGGAGTTTCTTTTTACTTAG

mRNA sequence

ATGGGTAACGGCAAATGGACTTTTGTTTTGGGCCTTCAAAGTGGTCGGCCCATAAGATTCTTCAAGTTCCCACATCGGCCAAGTCAGAAATTGGGATACGAGCTTCAGTCACGGAGCCGGGCGGTGAGCACAAAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCGCCGCACTCACCGGCATACGCCTATTTTTGGAGGAGTTTCTTTTTACTTAG

Coding sequence (CDS)

ATGGGTAACGGCAAATGGACTTTTGTTTTGGGCCTTCAAAGTGGTCGGCCCATAAGATTCTTCAAGTTCCCACATCGGCCAAGTCAGAAATTGGGATACGAGCTTCAGTCACGGAGCCGGGCGGTGAGCACAAAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCGCCGCACTCACCGGCATACGCCTATTTTTGGAGGAGTTTCTTTTTACTTAG
Homology
[Close]
BLAST of CmoCh08G009270 vs. TrEMBL
Match: A0A0D2UXN6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G243800 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.1e-07
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 1 

Query: 35 LQSRSRAVSTKRTILSPFTKEYRVLAALTGIRLFLEE-FLF 75
          ++SRSRAVST+RTILSPFTKEYRVLAA +GIRLFLE  FLF
Sbjct: 53 VKSRSRAVSTERTILSPFTKEYRVLAAYSGIRLFLEAYFLF 93

[Close]
BLAST of CmoCh08G009270 vs. TrEMBL
Match: A5AF12_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004037 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-06
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1 

Query: 33 YELQSRSRAVSTKRTILSPFTKEYRVLAALTGIRLFLE 71
          ++ +SRSRAVSTKRTILSPFTKEYRV AA +GIRLFLE
Sbjct: 11 FQSKSRSRAVSTKRTILSPFTKEYRVRAASSGIRLFLE 48

[Close]
BLAST of CmoCh08G009270 vs. NCBI nr
Match: gi|763806751|gb|KJB73689.1| (hypothetical protein B456_011G243800 [Gossypium raimondii])

HSP 1 Score: 61.2 bits (147), Expect = 8.7e-07
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 1 

Query: 35 LQSRSRAVSTKRTILSPFTKEYRVLAALTGIRLFLEE-FLF 75
          ++SRSRAVST+RTILSPFTKEYRVLAA +GIRLFLE  FLF
Sbjct: 53 VKSRSRAVSTERTILSPFTKEYRVLAAYSGIRLFLEAYFLF 93

[Close]
BLAST of CmoCh08G009270 vs. NCBI nr
Match: gi|147817638|emb|CAN64497.1| (hypothetical protein VITISV_004037 [Vitis vinifera])

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-06
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1 

Query: 33 YELQSRSRAVSTKRTILSPFTKEYRVLAALTGIRLFLE 71
          ++ +SRSRAVSTKRTILSPFTKEYRV AA +GIRLFLE
Sbjct: 11 FQSKSRSRAVSTKRTILSPFTKEYRVRAASSGIRLFLE 48

The following BLAST results are available for this feature:
BLAST of CmoCh08G009270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh08G009270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2UXN6_GOSRA6.1e-0782.93Uncharacterized protein OS=Gossypium raimondii GN=B456_011G243800 PE=4 SV=1[more]
A5AF12_VITVI1.0e-0681.58Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004037 PE=4 SV=1[more]
BLAST of CmoCh08G009270 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh08G009270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|763806751|gb|KJB73689.1|8.7e-0782.93hypothetical protein B456_011G243800 [Gossypium raimondii][more]
gi|147817638|emb|CAN64497.1|1.5e-0681.58hypothetical protein VITISV_004037 [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G009270.1CmoCh08G009270.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh08G009270MELO3C031597.2Melon (DHL92) v3.6.1cmomedB941
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh08G009270Cucumber (Gy14) v1cgycmoB1013
CmoCh08G009270Cucurbita maxima (Rimu)cmacmoB281
CmoCh08G009270Cucurbita maxima (Rimu)cmacmoB365
CmoCh08G009270Cucurbita maxima (Rimu)cmacmoB912
CmoCh08G009270Wild cucumber (PI 183967)cmocpiB893
CmoCh08G009270Cucumber (Chinese Long) v2cmocuB880
CmoCh08G009270Melon (DHL92) v3.5.1cmomeB806
CmoCh08G009270Melon (DHL92) v3.5.1cmomeB835
CmoCh08G009270Watermelon (Charleston Gray)cmowcgB796
CmoCh08G009270Watermelon (97103) v1cmowmB859
CmoCh08G009270Watermelon (97103) v1cmowmB862
CmoCh08G009270Cucurbita pepo (Zucchini)cmocpeB833
CmoCh08G009270Cucurbita pepo (Zucchini)cmocpeB853
CmoCh08G009270Bottle gourd (USVL1VR-Ls)cmolsiB804
CmoCh08G009270Cucumber (Gy14) v2cgybcmoB846
CmoCh08G009270Melon (DHL92) v3.6.1cmomedB909
CmoCh08G009270Melon (DHL92) v3.6.1cmomedB944
CmoCh08G009270Silver-seed gourdcarcmoB0326
CmoCh08G009270Silver-seed gourdcarcmoB1452
CmoCh08G009270Cucumber (Chinese Long) v3cmocucB1041
CmoCh08G009270Cucumber (Chinese Long) v3cmocucB1047
CmoCh08G009270Watermelon (97103) v2cmowmbB892
CmoCh08G009270Wax gourdcmowgoB1099
CmoCh08G009270Cucurbita moschata (Rifu)cmocmoB235
CmoCh08G009270Cucurbita moschata (Rifu)cmocmoB297
CmoCh08G009270Cucurbita moschata (Rifu)cmocmoB314