CmoCh08G006450 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G006450
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ran-binding protein 1 domain-containing
Location	Cmo_Chr08 : 4188636 .. 4190021 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGATGCTGAAAATGCAACATCTACAAAGAAGAGGGCTGCTGGAAGGGAACTATCACGCGATAACCCTGGGCTTGATGATGAAGATGATGTGTCTGAGCAAGCAACTGGAACATTTAAGCGGGCTAGTGATGAAGTGCTAGCCGGCAGAAGAATTGTCAAAGTACGTCGTGGTCAGACTGCCTCTACCCCATCTTCTAATCCCTTTGCAGGAATACGCTTGGTACCTCCAACCGATAATAGTGGAAGTGCTTCAGAAGGTAAAAGTACTGCGCAGGCAGTTGGTGAAAAAACAGGTTCAGATGAGGCAAATGGAAAGGATGTTTCCCATGAAGAGAAAAAGGATGGAGATCATAATGATGAGCCAGCAGAACATAAAATTGACACATCGGAGGCTGAATCTGGTACAAATGTGCAGAATGTTGATCAGAATAGCACTGATGTAAGTGAATCTGCCATACCTAAGGTAGATGATAACTTAGTTGCTGAAAGTAATAAAATTGAAAATGAAGTGCAAGCAGGAGAAGATAAGACTAAAAATGAGGAACTTATAGGAGGTGATAATGCTGAGAATGATGCTTGTGTTAGTGGCGGTAAGAATGAGAACGAGGATCCTGCACGAGGCAATGAGAATGAAAATGAAGAACCCTGTGAAGGAAATGAAATGCCAAACAAAGAAACTGGGGATCAAGAAAAGGTAGAACATGAAGAAAAGAAAGAAGAGGGAAGTGAAGCCGATACTAGTAAGGAGGCTTCTCCGTTGAGCTCATTCCAACAACTGTCAAGTAGCCAGAACGCCTTCACAGGTCTTGCAGGTACCGGATTTTCGACTACTACGTTCTCCTTCGGTAATGTACTCAAGGATGGGGCTGGTCTAAGTTCTAGTTTTGGTCTCTCTAATAATGGTAGCTCAGCCTTGTTTAATACTTCTTCCACTGTTTCCAAGAGTGAGAAAAGCGGTTTTCCATCAATGCAAGAGGTTGCAGTTGAAACTGGTGAAGAAAATGAACGTGTGGTTTTCAATGCTGATTCTATATTATTCGAGTTTCTCGACGGATCGTGGAAGGAACGTGGAAAAGGAGAGCTGAAAGTTAATGTCCCGACAATTGGTACTGGGCGAGCAAGGATTCTGATGAGGGCTAGAGGAAATTACAGGTTAATTTTGAATGCAAGTCTTTACCCTGACATGAAGCTCACAAACATGGACAAGAAGGGTATCACATTTGCCTGCATGAACAGCACTAGCGAAGGGAAGGATGGTCTTTCAACATTTGCTTTGAAGTTCAAGGACGCATCCATAGTGGAAGAGTTTCGTGCAGCAGTCACAGAGCATAAAGGCAAGGCTTCTTCTACAGTTCTGAAAACGCCAGAGAATTCTCCTTAA

mRNA sequence

ATGGGGGATGCTGAAAATGCAACATCTACAAAGAAGAGGGCTGCTGGAAGGGAACTATCACGCGATAACCCTGGGCTTGATGATGAAGATGATGTGTCTGAGCAAGCAACTGGAACATTTAAGCGGGCTAGTGATGAAGTGCTAGCCGGCAGAAGAATTGTCAAAGTACGTCGTGGTCAGACTGCCTCTACCCCATCTTCTAATCCCTTTGCAGGAATACGCTTGGTACCTCCAACCGATAATAGTGGAAGTGCTTCAGAAGGTAAAAGTACTGCGCAGGCAGTTGGTGAAAAAACAGGTTCAGATGAGGCAAATGGAAAGGATGTTTCCCATGAAGAGAAAAAGGATGGAGATCATAATGATGAGCCAGCAGAACATAAAATTGACACATCGGAGGCTGAATCTGGTACAAATGTGCAGAATGTTGATCAGAATAGCACTGATGTAAGTGAATCTGCCATACCTAAGGTAGATGATAACTTAGTTGCTGAAAGTAATAAAATTGAAAATGAAGTGCAAGCAGGAGAAGATAAGACTAAAAATGAGGAACTTATAGGAGGTGATAATGCTGAGAATGATGCTTGTGTTAGTGGCGGTAAGAATGAGAACGAGGATCCTGCACGAGGCAATGAGAATGAAAATGAAGAACCCTGTGAAGGAAATGAAATGCCAAACAAAGAAACTGGGGATCAAGAAAAGGTAGAACATGAAGAAAAGAAAGAAGAGGGAAGTGAAGCCGATACTAGTAAGGAGGCTTCTCCGTTGAGCTCATTCCAACAACTGTCAAGTAGCCAGAACGCCTTCACAGGTCTTGCAGGTACCGGATTTTCGACTACTACGTTCTCCTTCGGTAATGTACTCAAGGATGGGGCTGGTCTAAGTTCTAGTTTTGGTCTCTCTAATAATGGTAGCTCAGCCTTGTTTAATACTTCTTCCACTGTTTCCAAGAGTGAGAAAAGCGGTTTTCCATCAATGCAAGAGGTTGCAGTTGAAACTGGTGAAGAAAATGAACGTGTGGTTTTCAATGCTGATTCTATATTATTCGAGTTTCTCGACGGATCGTGGAAGGAACGTGGAAAAGGAGAGCTGAAAGTTAATGTCCCGACAATTGGTACTGGGCGAGCAAGGATTCTGATGAGGGCTAGAGGAAATTACAGGTTAATTTTGAATGCAAGTCTTTACCCTGACATGAAGCTCACAAACATGGACAAGAAGGGTATCACATTTGCCTGCATGAACAGCACTAGCGAAGGGAAGGATGGTCTTTCAACATTTGCTTTGAAGTTCAAGGACGCATCCATAGTGGAAGAGTTTCGTGCAGCAGTCACAGAGCATAAAGGCAAGGCTTCTTCTACAGTTCTGAAAACGCCAGAGAATTCTCCTTAA

Coding sequence (CDS)

ATGGGGGATGCTGAAAATGCAACATCTACAAAGAAGAGGGCTGCTGGAAGGGAACTATCACGCGATAACCCTGGGCTTGATGATGAAGATGATGTGTCTGAGCAAGCAACTGGAACATTTAAGCGGGCTAGTGATGAAGTGCTAGCCGGCAGAAGAATTGTCAAAGTACGTCGTGGTCAGACTGCCTCTACCCCATCTTCTAATCCCTTTGCAGGAATACGCTTGGTACCTCCAACCGATAATAGTGGAAGTGCTTCAGAAGGTAAAAGTACTGCGCAGGCAGTTGGTGAAAAAACAGGTTCAGATGAGGCAAATGGAAAGGATGTTTCCCATGAAGAGAAAAAGGATGGAGATCATAATGATGAGCCAGCAGAACATAAAATTGACACATCGGAGGCTGAATCTGGTACAAATGTGCAGAATGTTGATCAGAATAGCACTGATGTAAGTGAATCTGCCATACCTAAGGTAGATGATAACTTAGTTGCTGAAAGTAATAAAATTGAAAATGAAGTGCAAGCAGGAGAAGATAAGACTAAAAATGAGGAACTTATAGGAGGTGATAATGCTGAGAATGATGCTTGTGTTAGTGGCGGTAAGAATGAGAACGAGGATCCTGCACGAGGCAATGAGAATGAAAATGAAGAACCCTGTGAAGGAAATGAAATGCCAAACAAAGAAACTGGGGATCAAGAAAAGGTAGAACATGAAGAAAAGAAAGAAGAGGGAAGTGAAGCCGATACTAGTAAGGAGGCTTCTCCGTTGAGCTCATTCCAACAACTGTCAAGTAGCCAGAACGCCTTCACAGGTCTTGCAGGTACCGGATTTTCGACTACTACGTTCTCCTTCGGTAATGTACTCAAGGATGGGGCTGGTCTAAGTTCTAGTTTTGGTCTCTCTAATAATGGTAGCTCAGCCTTGTTTAATACTTCTTCCACTGTTTCCAAGAGTGAGAAAAGCGGTTTTCCATCAATGCAAGAGGTTGCAGTTGAAACTGGTGAAGAAAATGAACGTGTGGTTTTCAATGCTGATTCTATATTATTCGAGTTTCTCGACGGATCGTGGAAGGAACGTGGAAAAGGAGAGCTGAAAGTTAATGTCCCGACAATTGGTACTGGGCGAGCAAGGATTCTGATGAGGGCTAGAGGAAATTACAGGTTAATTTTGAATGCAAGTCTTTACCCTGACATGAAGCTCACAAACATGGACAAGAAGGGTATCACATTTGCCTGCATGAACAGCACTAGCGAAGGGAAGGATGGTCTTTCAACATTTGCTTTGAAGTTCAAGGACGCATCCATAGTGGAAGAGTTTCGTGCAGCAGTCACAGAGCATAAAGGCAAGGCTTCTTCTACAGTTCTGAAAACGCCAGAGAATTCTCCTTAA

Homology

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BLAST of CmoCh08G006450 vs. Swiss-Prot
Match: NU50B_ARATH (Nuclear pore complex protein NUP50B OS=Arabidopsis thaliana GN=NUP50B PE=1 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.3e-81
Identity = 223/483 (46.17%), Postives = 291/483 (60.25%), Query Frame = 1


Query: 1   MGDAENATS-TKKRAAGRELSRDNPGLDDED-DVSEQATGTFKRASDEVLAGRRIVKVRR 60
           MGD++NA   ++KR A +ELSRDNPGLDD+D D S   +GTF  AS EVLA RRI++VRR
Sbjct: 1   MGDSDNAIPFSRKRTALKELSRDNPGLDDDDEDTSALESGTFNTASKEVLASRRIIRVRR 60

Query: 61  GQTAST--PSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKD 120
              ++T  P+SNPF GIRLVP T  + S +  ++T      K             E   D
Sbjct: 61  TDRSATAPPASNPFTGIRLVPFTAPAPSTAAAETTKPLSAGK------------QETLAD 120

Query: 121 GDHNDEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGE 180
           G  +D   E   D+ E     +     +   D   +    + D    E ++  N V+ G 
Sbjct: 121 G-RSDATKETDGDSKEKSDAIDAVGKQETQGDEISAKTKDIIDGGEKEMSEAVNSVEGGG 180

Query: 181 DKTKNEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEH 240
              KNE+ I          V+ G+   +D     +N N    EG++   K+TG  +  E 
Sbjct: 181 AVNKNEDEIKTTMVTE---VAAGEETVKD-----DNNNSNTVEGSDCVVKDTGGNQ-TEK 240

Query: 241 EEKKEEGSEADTSK--EASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGA--- 300
           E K+ +G+E DT K  ++  LSSF Q SSS+NAFTGLA TGFS ++FSFG V ++G+   
Sbjct: 241 EGKEGDGNE-DTEKNGDSGALSSFHQHSSSKNAFTGLASTGFSASSFSFGLVPQEGSTGS 300

Query: 301 ---GLSSSFGLSNNGSSALFNTSSTVSKSEKS-----GFPSMQEVAVETGEENERVVFNA 360
                S SFG +NNG+S+LF  S   S + KS      FPS Q+V+VETGEENE+  F A
Sbjct: 301 GSEQSSFSFGQANNGNSSLFGASVATSITTKSTETTTAFPSKQDVSVETGEENEKAAFTA 360

Query: 361 DSILFEFLDGSWKERGKGELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMD 420
           DS++FE+L+G WKERGKGELKVN+ T    +AR++MR++GNYRL LNASLYP+MKL  MD
Sbjct: 361 DSVMFEYLEGGWKERGKGELKVNISTTENRKARLVMRSKGNYRLTLNASLYPEMKLAKMD 420

Query: 421 KKGITFACMNSTSEGKDGLSTFALKFKDASIVEEFRAAVTEHKGKASSTV-----LKTPE 462
           KKGITFAC+NS S+ KDGLST ALKFKD ++VEEFRA + EHK    S       LKTPE
Sbjct: 421 KKGITFACVNSVSDAKDGLSTLALKFKDPTVVEEFRAVIEEHKDSKPSVAEAAAPLKTPE 460

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BLAST of CmoCh08G006450 vs. Swiss-Prot
Match: NU50A_ARATH (Nuclear pore complex protein NUP50A OS=Arabidopsis thaliana GN=NUP50A PE=1 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.5e-80
Identity = 223/481 (46.36%), Postives = 290/481 (60.29%), Query Frame = 1


Query: 1   MGDAENATS-TKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRG 60
           MGD+EN    +KKR A ++LSRDNPGLDD+DD +E  +GTFK+ASDEVLA RRIV+V+R 
Sbjct: 1   MGDSENVQQPSKKRGALKQLSRDNPGLDDDDDSAELESGTFKKASDEVLASRRIVRVKRK 60

Query: 61  QTASTP--SSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKDG 120
           + ++ P  +SNPFAGI+L      +  AS    T                          
Sbjct: 61  EPSAAPVAASNPFAGIQL---VPTTAPASTPVGT-------------------------- 120

Query: 121 DHNDEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGED 180
             N   AE K+  +EA     V   +Q ++D+ E    +VD   V   + +  E +  +D
Sbjct: 121 --NAPLAESKLAPAEA-----VVEDNQKASDIEEG--DEVDSKKVDVKDAVGEETEKTKD 180

Query: 181 KTKNEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEM---PNKETGDQEKV 240
           K  N       +    A V     E       + N      EG +    P ++    ++ 
Sbjct: 181 KDDN-------HCGKSADVQVAATEVAQMVSCDTNVCNNAVEGTDQTDFPLEKDSGGDQA 240

Query: 241 EHEEKKEEG-SEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGA-- 300
           E +EK+  G  EAD + +    SSFQQ SS++NAFTGLA T  S ++FSFG V +DG+  
Sbjct: 241 EKKEKEGNGIEEADKNGDNGAFSSFQQHSSNKNAFTGLASTEASGSSFSFGLVSQDGSTG 300

Query: 301 -GLSSSFGLSNNGSSALFNT--SSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILF 360
            G    FGL ++ SS++F    SS + KSE SGFP  QEV+ ETGEENE+V F+ADSI+F
Sbjct: 301 TGSLFGFGLPSSNSSSIFGATGSSIIKKSEGSGFPPKQEVSTETGEENEKVAFSADSIMF 360

Query: 361 EFLDGSWKERGKGELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGIT 420
           E+LDG WKERGKGELKVNV +   G+AR++MRA+GNYRLILNASLYP+MKL NMDKKGIT
Sbjct: 361 EYLDGGWKERGKGELKVNVSS-NDGKARLVMRAKGNYRLILNASLYPEMKLANMDKKGIT 420

Query: 421 FACMNSTSEGKDGLSTFALKFKDASIVEEFRAAVTEHK--------GKASSTVLKTPENS 462
           FAC+NS SEGK+GLSTFALKFKD +IVEEFR A+ +HK         + S+  LKTPENS
Sbjct: 421 FACVNSVSEGKEGLSTFALKFKDPTIVEEFRVAIDKHKDSKPMEKAAEKSALPLKTPENS 435

[Close]

BLAST of CmoCh08G006450 vs. Swiss-Prot
Match: RNB3L_HUMAN (Ran-binding protein 3-like OS=Homo sapiens GN=RANBP3L PE=2 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 4.8e-07
Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = 1


Query: 304 SSALFNTSSTVSKSEKSGFPS----MQEVAVETGEENERVVFNADSILFEF--LDGSWKE 363
           + ++ NTS   S +  S  PS    ++++ V TGEE E  V   +  LF F     SW E
Sbjct: 259 TDSIKNTSLIESAAAFSSQPSRKCLLEKIDVITGEETEHNVLKINCKLFIFNKTTQSWIE 318

Query: 364 RGKGELKVNVPT---IGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGI 408
           RG+G L++N       GT ++R++MR +G+ RLILN+ L+  MK+   + K +
Sbjct: 319 RGRGTLRLNDTASTDCGTLQSRLIMRNQGSLRLILNSKLWAQMKIQRANHKNV 371

[Close]

BLAST of CmoCh08G006450 vs. Swiss-Prot
Match: RNB3L_MOUSE (Ran-binding protein 3-like OS=Mus musculus GN=Ranbp3l PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-06
Identity = 50/171 (29.24%), Postives = 84/171 (49.12%), Query Frame = 1


Query: 302 NGSSALFNTSSTVSKSEKSGFPS----MQEVAVETGEENERVVFNADSILFEFLDG--SW 361
           + S ++ N S   S +  S  PS    ++++ V TGEE E  V   +  +F F     SW
Sbjct: 282 SNSDSIENISLVESAAAFSSKPSQKCLLEKIDVITGEETEHNVLKINCKIFVFNKATESW 341

Query: 362 KERGKGELKVNVPT---IGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACM 421
            ERG+G L++N       GT ++R++MR +G+ RL+LN+ L+  MK+    +K +    +
Sbjct: 342 SERGQGILRLNDTAGRECGTLQSRLIMRNQGSLRLVLNSRLWAQMKIQRASQKNLR---I 401

Query: 422 NSTSEGKDGLSTFALK--FKDASIVEEFRAAVTEHKGKASSTVLKTPENSP 462
            +T    DG+  F ++   KD      F  A   H+  A  ++ K  +  P
Sbjct: 402 TATDLEDDGIKIFLIQASAKDTG----FLYAAIHHRLVALRSLAKQGDGGP 445

[Close]

BLAST of CmoCh08G006450 vs. TrEMBL
Match: A0A0A0KAD0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446650 PE=4 SV=1)

HSP 1 Score: 657.9 bits (1696), Expect = 9.0e-186
Identity = 369/466 (79.18%), Postives = 405/466 (86.91%), Query Frame = 1


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPGLDD++DVSEQ TGTFKRAS+EVLA RRIVKVRRG 
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGLDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 60

Query: 61  TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHE-EKKDGDH 120
           TAS PSSNPFAGIRLVPPT+NSGS +E +   +A GEK GSDEANGKD+ HE  +KDGDH
Sbjct: 61  TASAPSSNPFAGIRLVPPTENSGSVAEVRRDTEAAGEKAGSDEANGKDIPHEMTQKDGDH 120

Query: 121 NDEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGEDKT 180
           +D+P + KIDTSEA+S   VQ VDQNST  SESAI KVDDNLV+ESNKIENE   G DKT
Sbjct: 121 SDDPVQSKIDTSEAKSVPKVQPVDQNSTVSSESAISKVDDNLVSESNKIENEEPVGGDKT 180

Query: 181 KNEELI--GGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEHE 240
            NEEL+      +END C SG KNE+ DP RG++NE+EEP EGNE+ NKETG+ EK E E
Sbjct: 181 GNEELVRDAEKESENDECASGNKNEDADPERGDKNESEEPSEGNEIQNKETGELEKTESE 240

Query: 241 EKKEEGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGLSSSF 300
           E KE+ SE + SKEA+PL+SFQQLSSSQNAFTGLAGTGFST+TFSFGN+ KDG GL++SF
Sbjct: 241 ENKEDKSEGEPSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 300

Query: 301 GLSNNGSSALFNTS--STVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSW 360
           GLSNNGSSALF TS  S VSKSEKSGFPSMQEVAVETGEENE+VVFNADSILFEF+DGSW
Sbjct: 301 GLSNNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 360

Query: 361 KERGKGELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNST 420
           KERGKGELKVNVPT G GR RILMRARGNYRLILNASLYPDMKLTNMDK+GITFACMNST
Sbjct: 361 KERGKGELKVNVPTSGIGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 420

Query: 421 SEGKDGLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP 462
           ++GK GLST  +KFKD SIVEEFRAAVTEHKGKASSTVLKTPENSP
Sbjct: 421 NDGKVGLSTLGVKFKDVSIVEEFRAAVTEHKGKASSTVLKTPENSP 466

[Close]

BLAST of CmoCh08G006450 vs. TrEMBL
Match: B9SQB9_RICCO (Ran-binding protein, putative OS=Ricinus communis GN=RCOM_0980270 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 9.2e-122
Identity = 287/472 (60.81%), Postives = 331/472 (70.13%), Query Frame = 1


Query: 1   MGDAENAT-STKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRG 60
           MGDAEN   S+KKRAAGRE+SRDNPGLDDE+D  EQ TGTFKRASDEVLAGRRIVKVRR 
Sbjct: 1   MGDAENTLPSSKKRAAGREISRDNPGLDDEEDTLEQETGTFKRASDEVLAGRRIVKVRRS 60

Query: 61  QTASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKDGDH 120
           QT+STPSSNPFAGIRLVPP + +   +   + A    EK   D  N      EE KD   
Sbjct: 61  QTSSTPSSNPFAGIRLVPPPEPTTVLAAAATEAVTSNEKASEDRKNDAVKDTEEGKD--E 120

Query: 121 NDEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAES--NKIENEVQAGED 180
             +  E K +   AE            T   E A  K ++ +V E   +K++NE  A +D
Sbjct: 121 TGKQLESKSEEQVAE------------TVAKEIAEDKENNGVVDEGTESKVDNENPAEDD 180

Query: 181 KTKNEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEHE 240
           KT+NE   GG+           K ENE  A   E ENE+  EG           +K E E
Sbjct: 181 KTENETAEGGE-----------KIENEKAAGDEETENEKAVEG-----------DKTETE 240

Query: 241 EKKEEGSE-ADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGLSSS 300
           EKK+ GSE  D S E+ PLSSFQQLSSSQNAFTGLAGTGFST +F+FG+V KDG+  +S+
Sbjct: 241 EKKDNGSENVDPSAESKPLSSFQQLSSSQNAFTGLAGTGFSTASFTFGSVSKDGSSGTST 300

Query: 301 -----FGLSNNGSSALFNT--SSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFE 360
                FGLSNNGSS++F T  SS VSK+E +GFPSMQE+ VETGEENE V F+ADS+LFE
Sbjct: 301 GSLFGFGLSNNGSSSIFGTPGSSIVSKNEGTGFPSMQEIPVETGEENETVAFSADSVLFE 360

Query: 361 FLDGSWKERGKGELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITF 420
           FL+G WKERGKGELKVNV T GT RAR+LMRARGNYRLILNASLYPDMKLTNM+K+G+TF
Sbjct: 361 FLNGGWKERGKGELKVNVSTTGTERARLLMRARGNYRLILNASLYPDMKLTNMEKRGVTF 420

Query: 421 ACMNSTSEGKDGLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP 462
           ACMNSTSE KDGLSTFALKFKD S+VE+FRAAV  HK KA + VLKTPENSP
Sbjct: 421 ACMNSTSENKDGLSTFALKFKDGSVVEDFRAAVAAHKDKA-AIVLKTPENSP 435

[Close]

BLAST of CmoCh08G006450 vs. TrEMBL
Match: A0A067KLS2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06252 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 8.6e-120
Identity = 282/486 (58.02%), Postives = 343/486 (70.58%), Query Frame = 1


Query: 1   MGDAENATS-TKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRG 60
           MGDAE+    +KKRAAGRE+S+DNPGLDD+D+  E+ TGTFKRASDEVLA RRI+KVRR 
Sbjct: 1   MGDAEHTLPPSKKRAAGREISKDNPGLDDDDESVEEETGTFKRASDEVLASRRILKVRRN 60

Query: 61  QTASTPSSNPFAGIRLVPPTDNSG----SASEGKSTAQAVGEKTGSDEANGK-DVSHEEK 120
            T+STPSSNPFAGIRLVPPT+++     + +E  +T + V EK       GK D   + +
Sbjct: 61  PTSSTPSSNPFAGIRLVPPTESTTVPAVATTEVVTTTEEVSEK-------GKADAGEKAE 120

Query: 121 KDGDHNDEPAEHKIDTSEAESGTN-VQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQ 180
           K  D   +  E KI    AE+ T  V    +N+   +E+   KVDD   A          
Sbjct: 121 KGKDETGQHLESKIQEPAAETSTKEVAEDKENNNAANEATGSKVDDEKPA---------- 180

Query: 181 AGEDKTKNEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEK 240
              DK +NE+  GGD  E+     G + EN++ A G E E+ +   G    NK+  + + 
Sbjct: 181 ---DKVENEKAAGGDETESKIAAGGEEVENKNTADGEETEDVKAVGGGTSENKKV-EGDN 240

Query: 241 VEHEEKKEEGSE-ADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAG 300
            E++EKK+ GS+  D S E++ LSSFQQLSSSQNAFTGLAGTGFS +TFSFG+V KDG+ 
Sbjct: 241 TENKEKKDNGSQNEDPSTESAHLSSFQQLSSSQNAFTGLAGTGFSASTFSFGSVPKDGSS 300

Query: 301 ---------------LSSSFGLSNNGSSALFNT--SSTVSKSEKSGFPSMQEVAVETGEE 360
                           S  FGLS+NGSS++FNT  SS VSK+E +GFPSMQEV+VETGEE
Sbjct: 301 PGTITASLFGQKNDQSSFGFGLSSNGSSSIFNTTGSSVVSKNEGTGFPSMQEVSVETGEE 360

Query: 361 NERVVFNADSILFEFLDGSWKERGKGELKVNVPTIGTGRARILMRARGNYRLILNASLYP 420
           NERVVF+ADS+LFE+ +GSWKERGKGELKVNV T GT +AR+LMRARGNYRLILNASLYP
Sbjct: 361 NERVVFSADSVLFEYFNGSWKERGKGELKVNVSTAGTEKARLLMRARGNYRLILNASLYP 420

Query: 421 DMKLTNMDKKGITFACMNSTSEGKDGLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLK 462
           DMKLTNMDK+GITFACMNST E KDGLSTFALKFKDAS+VEEFRAA+T HK K ++TVLK
Sbjct: 421 DMKLTNMDKRGITFACMNSTGESKDGLSTFALKFKDASVVEEFRAAITAHKDK-TNTVLK 464

[Close]

BLAST of CmoCh08G006450 vs. TrEMBL
Match: A0A061GI24_THECC (NUP50 protein, putative OS=Theobroma cacao GN=TCM_028672 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 8.6e-112
Identity = 276/482 (57.26%), Postives = 330/482 (68.46%), Query Frame = 1


Query: 1   MGDAENATS-TKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRG 60
           MGDAENA   +KKRAAGRELSRDNPGLDD++D SEQ TGTFKRASDEVLA RRIVKVRR 
Sbjct: 1   MGDAENALPPSKKRAAGRELSRDNPGLDDDEDSSEQETGTFKRASDEVLANRRIVKVRRN 60

Query: 61  QTASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTG-SDEA---NGKDVSHEEKK 120
           QT ST SSNPF+ IRLVPP + + +A    +T ++    T  + EA   N K+VS + K 
Sbjct: 61  QTTSTASSNPFSAIRLVPPMEPTITAETPSATPESTTTTTEVTAEAPIVNEKEVSEDGKD 120

Query: 121 DGDHNDEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAG 180
           D + +++  +          G N Q+  +  TD +E    K +   + +           
Sbjct: 121 DVNKSEQNKD----------GNNQQS--EKKTDETEPGSAKSEGESIKQY---------- 180

Query: 181 EDKTKNEELIGGDNAENDACVSGGKNE-NEDPARGNENENEEPCEGNEMPNKETGDQEKV 240
             K K +E +    A+ ++    G N  NE+  +G    N+E   G   P  E    EK 
Sbjct: 181 --KNKEDEPVSDAVADTESAEDKGSNVVNEEIQKG---ANDEKPAGGGKPEDEDKKDEKT 240

Query: 241 EHEEKKEEGSE-ADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGL 300
            +E+ K++ SE AD++ E + LSSFQQLSSSQNAFTGLAGTGFSTT+FSFG+  KDG+  
Sbjct: 241 ANEDNKDKSSENADSTAEGASLSSFQQLSSSQNAFTGLAGTGFSTTSFSFGSTQKDGSTS 300

Query: 301 SS------------SFGLSNNGSSALFNTSST--VSKSEKSGFPSMQEVAVETGEENERV 360
           S              FGLS NG+S+LFN S T  VSKSE SGFP+MQEV VETGEENE+V
Sbjct: 301 SVPLFGQKNDQPTFGFGLSTNGNSSLFNASGTSIVSKSEGSGFPAMQEVPVETGEENEKV 360

Query: 361 VFNADSILFEFLDGSWKERGKGELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKL 420
           VF ADS+LFEF+DG WKERGKGELKVNV T GT RAR+LMRA+GNYRLILNASLYPDMKL
Sbjct: 361 VFLADSVLFEFIDGGWKERGKGELKVNVSTTGTERARLLMRAKGNYRLILNASLYPDMKL 420

Query: 421 TNMDKKGITFACMNSTSEGKDGLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPEN 462
           TNMDKKGITFACMN T E K+GLSTFALKFKDAS+VEEFRAAV  HKGKA++ VLKTPEN
Sbjct: 421 TNMDKKGITFACMNCTGEEKEGLSTFALKFKDASLVEEFRAAVMAHKGKAAA-VLKTPEN 454

[Close]

BLAST of CmoCh08G006450 vs. TrEMBL
Match: B9GEK5_POPTR (Ran-binding protein 1 domain-containing OS=Populus trichocarpa GN=POPTR_0001s17930g PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 8.6e-112
Identity = 276/484 (57.02%), Postives = 330/484 (68.18%), Query Frame = 1


Query: 1   MGDAENATS-TKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRG 60
           MGDAEN+   +KKRAAGRE+SRDNPGLDD+D V EQ TGTFKRAS+EVLAGRRIVKVRR 
Sbjct: 1   MGDAENSLPPSKKRAAGREISRDNPGLDDDDSV-EQETGTFKRASEEVLAGRRIVKVRRN 60

Query: 61  QTASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEAN-GKDV--SHEEKK- 120
           QT STPSSNPFA IRLVPPT+    A    +T +  GEKT   E+   K V  S E+KK 
Sbjct: 61  QTTSTPSSNPFASIRLVPPTEPI--AGTAVATTEGQGEKTEQSESEIDKPVAESAEDKKN 120

Query: 121 --DGDHNDEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQ 180
             D + + EP E K D   AE+  + ++V+       E       D    E         
Sbjct: 121 AVDKEKSKEP-EGKTDEPVAETAMDKESVEDKGNTKDEPVTEIATDKEKGE--------- 180

Query: 181 AGEDKTKNEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEK 240
             E + K +E + G   + ++    G N   + A   + +NE+P E      K TGD + 
Sbjct: 181 --ESEGKVDEPVAGTAIDKESAEDKGNNSTVNEATELKVDNEKPLEDETEKEKATGDDD- 240

Query: 241 VEHEEKKEEGSE-ADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAG 300
            E+++KK+ GSE  D S E +PL+SFQQLSSSQNAFTGLAGTGFSTT+F+FG+  KDG+ 
Sbjct: 241 AENQDKKDNGSENVDPSSEGAPLNSFQQLSSSQNAFTGLAGTGFSTTSFTFGSFPKDGSV 300

Query: 301 L---------------SSSFGLSNNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENE 360
           +               S  FGLSNNGSS+L   +S VSK+E +GFPSMQEV VETGEENE
Sbjct: 301 MGGGSGSLFGQKNEQPSFGFGLSNNGSSSL---ASIVSKTEGTGFPSMQEVPVETGEENE 360

Query: 361 RVVFNADSILFEFLDGSWKERGKGELKVNVPTIGTGRARILMRARGNYRLILNASLYPDM 420
           RVVF+ADS++FEFLDG WKERGKGEL+VNV T G  RAR+LMRARGN+RLILNA++YPDM
Sbjct: 361 RVVFSADSVVFEFLDGGWKERGKGELRVNVSTTGAERARLLMRARGNFRLILNANIYPDM 420

Query: 421 KLTNMDKKGITFACMNSTSEGKDGLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTP 462
           KLTNMDK+GITFACMNS  EGKD LSTFALKFKD+SIVEEFR AVT H+ KA    LKTP
Sbjct: 421 KLTNMDKRGITFACMNSIGEGKDSLSTFALKFKDSSIVEEFRTAVTAHRDKA-PVALKTP 464

[Close]

BLAST of CmoCh08G006450 vs. TAIR10
Match: AT3G15970.1 (AT3G15970.1 NUP50 (Nucleoporin 50 kDa) protein)

HSP 1 Score: 305.1 bits (780), Expect = 7.5e-83
Identity = 223/483 (46.17%), Postives = 291/483 (60.25%), Query Frame = 1


Query: 1   MGDAENATS-TKKRAAGRELSRDNPGLDDED-DVSEQATGTFKRASDEVLAGRRIVKVRR 60
           MGD++NA   ++KR A +ELSRDNPGLDD+D D S   +GTF  AS EVLA RRI++VRR
Sbjct: 1   MGDSDNAIPFSRKRTALKELSRDNPGLDDDDEDTSALESGTFNTASKEVLASRRIIRVRR 60

Query: 61  GQTAST--PSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKD 120
              ++T  P+SNPF GIRLVP T  + S +  ++T      K             E   D
Sbjct: 61  TDRSATAPPASNPFTGIRLVPFTAPAPSTAAAETTKPLSAGK------------QETLAD 120

Query: 121 GDHNDEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGE 180
           G  +D   E   D+ E     +     +   D   +    + D    E ++  N V+ G 
Sbjct: 121 G-RSDATKETDGDSKEKSDAIDAVGKQETQGDEISAKTKDIIDGGEKEMSEAVNSVEGGG 180

Query: 181 DKTKNEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEH 240
              KNE+ I          V+ G+   +D     +N N    EG++   K+TG  +  E 
Sbjct: 181 AVNKNEDEIKTTMVTE---VAAGEETVKD-----DNNNSNTVEGSDCVVKDTGGNQ-TEK 240

Query: 241 EEKKEEGSEADTSK--EASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGA--- 300
           E K+ +G+E DT K  ++  LSSF Q SSS+NAFTGLA TGFS ++FSFG V ++G+   
Sbjct: 241 EGKEGDGNE-DTEKNGDSGALSSFHQHSSSKNAFTGLASTGFSASSFSFGLVPQEGSTGS 300

Query: 301 ---GLSSSFGLSNNGSSALFNTSSTVSKSEKS-----GFPSMQEVAVETGEENERVVFNA 360
                S SFG +NNG+S+LF  S   S + KS      FPS Q+V+VETGEENE+  F A
Sbjct: 301 GSEQSSFSFGQANNGNSSLFGASVATSITTKSTETTTAFPSKQDVSVETGEENEKAAFTA 360

Query: 361 DSILFEFLDGSWKERGKGELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMD 420
           DS++FE+L+G WKERGKGELKVN+ T    +AR++MR++GNYRL LNASLYP+MKL  MD
Sbjct: 361 DSVMFEYLEGGWKERGKGELKVNISTTENRKARLVMRSKGNYRLTLNASLYPEMKLAKMD 420

Query: 421 KKGITFACMNSTSEGKDGLSTFALKFKDASIVEEFRAAVTEHKGKASSTV-----LKTPE 462
           KKGITFAC+NS S+ KDGLST ALKFKD ++VEEFRA + EHK    S       LKTPE
Sbjct: 421 KKGITFACVNSVSDAKDGLSTLALKFKDPTVVEEFRAVIEEHKDSKPSVAEAAAPLKTPE 460

[Close]

BLAST of CmoCh08G006450 vs. TAIR10
Match: AT1G52380.1 (AT1G52380.1 NUP50 (Nucleoporin 50 kDa) protein)

HSP 1 Score: 301.6 bits (771), Expect = 8.3e-82
Identity = 223/481 (46.36%), Postives = 290/481 (60.29%), Query Frame = 1


Query: 1   MGDAENATS-TKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRG 60
           MGD+EN    +KKR A ++LSRDNPGLDD+DD +E  +GTFK+ASDEVLA RRIV+V+R 
Sbjct: 1   MGDSENVQQPSKKRGALKQLSRDNPGLDDDDDSAELESGTFKKASDEVLASRRIVRVKRK 60

Query: 61  QTASTP--SSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKDG 120
           + ++ P  +SNPFAGI+L      +  AS    T                          
Sbjct: 61  EPSAAPVAASNPFAGIQL---VPTTAPASTPVGT-------------------------- 120

Query: 121 DHNDEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGED 180
             N   AE K+  +EA     V   +Q ++D+ E    +VD   V   + +  E +  +D
Sbjct: 121 --NAPLAESKLAPAEA-----VVEDNQKASDIEEG--DEVDSKKVDVKDAVGEETEKTKD 180

Query: 181 KTKNEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEM---PNKETGDQEKV 240
           K  N       +    A V     E       + N      EG +    P ++    ++ 
Sbjct: 181 KDDN-------HCGKSADVQVAATEVAQMVSCDTNVCNNAVEGTDQTDFPLEKDSGGDQA 240

Query: 241 EHEEKKEEG-SEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGA-- 300
           E +EK+  G  EAD + +    SSFQQ SS++NAFTGLA T  S ++FSFG V +DG+  
Sbjct: 241 EKKEKEGNGIEEADKNGDNGAFSSFQQHSSNKNAFTGLASTEASGSSFSFGLVSQDGSTG 300

Query: 301 -GLSSSFGLSNNGSSALFNT--SSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILF 360
            G    FGL ++ SS++F    SS + KSE SGFP  QEV+ ETGEENE+V F+ADSI+F
Sbjct: 301 TGSLFGFGLPSSNSSSIFGATGSSIIKKSEGSGFPPKQEVSTETGEENEKVAFSADSIMF 360

Query: 361 EFLDGSWKERGKGELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGIT 420
           E+LDG WKERGKGELKVNV +   G+AR++MRA+GNYRLILNASLYP+MKL NMDKKGIT
Sbjct: 361 EYLDGGWKERGKGELKVNVSS-NDGKARLVMRAKGNYRLILNASLYPEMKLANMDKKGIT 420

Query: 421 FACMNSTSEGKDGLSTFALKFKDASIVEEFRAAVTEHK--------GKASSTVLKTPENS 462
           FAC+NS SEGK+GLSTFALKFKD +IVEEFR A+ +HK         + S+  LKTPENS
Sbjct: 421 FACVNSVSEGKEGLSTFALKFKDPTIVEEFRVAIDKHKDSKPMEKAAEKSALPLKTPENS 435

[Close]

BLAST of CmoCh08G006450 vs. NCBI nr
Match: gi|659124390|ref|XP_008462135.1| (PREDICTED: E3 SUMO-protein ligase RanBP2 isoform X1 [Cucumis melo])

HSP 1 Score: 665.6 bits (1716), Expect = 6.2e-188
Identity = 375/466 (80.47%), Postives = 410/466 (87.98%), Query Frame = 1


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPG DD++DVSEQ TGTFKRAS+EVLA RRIVKVRRG 
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGPDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 60

Query: 61  TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHE-EKKDGDH 120
           TAS PSSNPFAGIRLVPPT+NSGS +E +   +A  EK GSDEANGKD+ HE  +KDGDH
Sbjct: 61  TASAPSSNPFAGIRLVPPTENSGSVAEVQHDTEAADEKAGSDEANGKDIPHEVTQKDGDH 120

Query: 121 NDEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGEDKT 180
           +DEP + KIDTSEA+S   VQ VDQNST +SESAI KVDDNLV ESNKIENE  AG DKT
Sbjct: 121 SDEPVKCKIDTSEAKSVPKVQPVDQNSTVLSESAISKVDDNLVFESNKIENEEPAGGDKT 180

Query: 181 KNEELI--GGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEHE 240
            NEEL+      +END CVS  KNE+E PARG++NENEEP EGNE+ NKETG+QEK E+E
Sbjct: 181 GNEELVRDAEKESENDECVSCDKNEDEVPARGDKNENEEPSEGNEIQNKETGEQEKTENE 240

Query: 241 EKKEEGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGLSSSF 300
           E KE+ SE + SKEA+PL+SFQQLSSSQNAFTGLAGTGFST+TFSFGN+ KDG GL++SF
Sbjct: 241 ENKEDKSEGEPSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 300

Query: 301 GLSNNGSSALFNT--SSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSW 360
           GLSNNGSSALF T  SSTVSKSE+SGFPSMQEVAVETGEENE+VVFNADSILFEF+DGSW
Sbjct: 301 GLSNNGSSALFGTSGSSTVSKSERSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 360

Query: 361 KERGKGELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNST 420
           KERGKGELKVNVPT GTGR RILMRARGNYRLILNASLYPDMKLTNMDK+GITFACMNST
Sbjct: 361 KERGKGELKVNVPTSGTGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 420

Query: 421 SEGKDGLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP 462
            +GKDGLSTF +KFKD SIVEEFRAAVTEHKGKASSTVLKTPENSP
Sbjct: 421 IDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKGKASSTVLKTPENSP 466

[Close]

BLAST of CmoCh08G006450 vs. NCBI nr
Match: gi|778729259|ref|XP_011659558.1| (PREDICTED: nuclear pore complex protein NUP50A [Cucumis sativus])

HSP 1 Score: 657.9 bits (1696), Expect = 1.3e-185
Identity = 369/466 (79.18%), Postives = 405/466 (86.91%), Query Frame = 1


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPGLDD++DVSEQ TGTFKRAS+EVLA RRIVKVRRG 
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGLDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 60

Query: 61  TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHE-EKKDGDH 120
           TAS PSSNPFAGIRLVPPT+NSGS +E +   +A GEK GSDEANGKD+ HE  +KDGDH
Sbjct: 61  TASAPSSNPFAGIRLVPPTENSGSVAEVRRDTEAAGEKAGSDEANGKDIPHEMTQKDGDH 120

Query: 121 NDEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGEDKT 180
           +D+P + KIDTSEA+S   VQ VDQNST  SESAI KVDDNLV+ESNKIENE   G DKT
Sbjct: 121 SDDPVQSKIDTSEAKSVPKVQPVDQNSTVSSESAISKVDDNLVSESNKIENEEPVGGDKT 180

Query: 181 KNEELI--GGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEHE 240
            NEEL+      +END C SG KNE+ DP RG++NE+EEP EGNE+ NKETG+ EK E E
Sbjct: 181 GNEELVRDAEKESENDECASGNKNEDADPERGDKNESEEPSEGNEIQNKETGELEKTESE 240

Query: 241 EKKEEGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGLSSSF 300
           E KE+ SE + SKEA+PL+SFQQLSSSQNAFTGLAGTGFST+TFSFGN+ KDG GL++SF
Sbjct: 241 ENKEDKSEGEPSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 300

Query: 301 GLSNNGSSALFNTS--STVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSW 360
           GLSNNGSSALF TS  S VSKSEKSGFPSMQEVAVETGEENE+VVFNADSILFEF+DGSW
Sbjct: 301 GLSNNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 360

Query: 361 KERGKGELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNST 420
           KERGKGELKVNVPT G GR RILMRARGNYRLILNASLYPDMKLTNMDK+GITFACMNST
Sbjct: 361 KERGKGELKVNVPTSGIGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 420

Query: 421 SEGKDGLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP 462
           ++GK GLST  +KFKD SIVEEFRAAVTEHKGKASSTVLKTPENSP
Sbjct: 421 NDGKVGLSTLGVKFKDVSIVEEFRAAVTEHKGKASSTVLKTPENSP 466

[Close]

BLAST of CmoCh08G006450 vs. NCBI nr
Match: gi|659124394|ref|XP_008462138.1| (PREDICTED: E3 SUMO-protein ligase RanBP2 isoform X2 [Cucumis melo])

HSP 1 Score: 637.9 bits (1644), Expect = 1.4e-179
Identity = 362/457 (79.21%), Postives = 397/457 (86.87%), Query Frame = 1


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPG DD++DVSEQ TGTFKRAS+EVLA RRIVKVRRG 
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGPDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 60

Query: 61  TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHE-EKKDGDH 120
           TAS PSSNPFAGIRLVPPT+NSGS +E +   +A  EK GSDEANGKD+ HE  +KDGDH
Sbjct: 61  TASAPSSNPFAGIRLVPPTENSGSVAEVQHDTEAADEKAGSDEANGKDIPHEVTQKDGDH 120

Query: 121 NDEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGEDKT 180
           +DEP + KIDTSEA+S   VQ VDQNST +SESAI KVDDNLV ESNKIENE  AG DKT
Sbjct: 121 SDEPVKCKIDTSEAKSVPKVQPVDQNSTVLSESAISKVDDNLVFESNKIENEEPAGGDKT 180

Query: 181 KNEELI--GGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEHE 240
            NEEL+      +END CVS  KNE+E PARG++NENEEP EGNE+ NKETG+QEK E+E
Sbjct: 181 GNEELVRDAEKESENDECVSCDKNEDEVPARGDKNENEEPSEGNEIQNKETGEQEKTENE 240

Query: 241 EKKEEGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGLSSSF 300
           E KE+ SE + SKEA+PL+SFQQLSSSQNAFTGLAGTGFST+TFSFGN+ KDG GL++SF
Sbjct: 241 ENKEDKSEGEPSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 300

Query: 301 GLSNNGSSALFNT--SSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSW 360
           GLSNNGSSALF T  SSTVSKSE+SGFPSMQEVAVETGEENE+VVFNADSILFEF+DGSW
Sbjct: 301 GLSNNGSSALFGTSGSSTVSKSERSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 360

Query: 361 KERGKGELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNST 420
           KERGKGELKVNVPT GTGR RILMRARGNYRLILNASLYPDMKLTNMDK+GITFACMNST
Sbjct: 361 KERGKGELKVNVPTSGTGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 420

Query: 421 SEGKDGLSTFALKFKDASIVEEFRAAVTEHKGKASST 453
            +GKDGLSTF +KFKD SIVEEFRAAVTEHK   S T
Sbjct: 421 IDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKVGVSIT 457

[Close]

BLAST of CmoCh08G006450 vs. NCBI nr
Match: gi|255574554|ref|XP_002528188.1| (PREDICTED: nuclear pore complex protein NUP50A [Ricinus communis])

HSP 1 Score: 445.3 bits (1144), Expect = 1.3e-121
Identity = 287/472 (60.81%), Postives = 331/472 (70.13%), Query Frame = 1


Query: 1   MGDAENAT-STKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRG 60
           MGDAEN   S+KKRAAGRE+SRDNPGLDDE+D  EQ TGTFKRASDEVLAGRRIVKVRR 
Sbjct: 1   MGDAENTLPSSKKRAAGREISRDNPGLDDEEDTLEQETGTFKRASDEVLAGRRIVKVRRS 60

Query: 61  QTASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKDGDH 120
           QT+STPSSNPFAGIRLVPP + +   +   + A    EK   D  N      EE KD   
Sbjct: 61  QTSSTPSSNPFAGIRLVPPPEPTTVLAAAATEAVTSNEKASEDRKNDAVKDTEEGKD--E 120

Query: 121 NDEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAES--NKIENEVQAGED 180
             +  E K +   AE            T   E A  K ++ +V E   +K++NE  A +D
Sbjct: 121 TGKQLESKSEEQVAE------------TVAKEIAEDKENNGVVDEGTESKVDNENPAEDD 180

Query: 181 KTKNEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEHE 240
           KT+NE   GG+           K ENE  A   E ENE+  EG           +K E E
Sbjct: 181 KTENETAEGGE-----------KIENEKAAGDEETENEKAVEG-----------DKTETE 240

Query: 241 EKKEEGSE-ADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGLSSS 300
           EKK+ GSE  D S E+ PLSSFQQLSSSQNAFTGLAGTGFST +F+FG+V KDG+  +S+
Sbjct: 241 EKKDNGSENVDPSAESKPLSSFQQLSSSQNAFTGLAGTGFSTASFTFGSVSKDGSSGTST 300

Query: 301 -----FGLSNNGSSALFNT--SSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFE 360
                FGLSNNGSS++F T  SS VSK+E +GFPSMQE+ VETGEENE V F+ADS+LFE
Sbjct: 301 GSLFGFGLSNNGSSSIFGTPGSSIVSKNEGTGFPSMQEIPVETGEENETVAFSADSVLFE 360

Query: 361 FLDGSWKERGKGELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITF 420
           FL+G WKERGKGELKVNV T GT RAR+LMRARGNYRLILNASLYPDMKLTNM+K+G+TF
Sbjct: 361 FLNGGWKERGKGELKVNVSTTGTERARLLMRARGNYRLILNASLYPDMKLTNMEKRGVTF 420

Query: 421 ACMNSTSEGKDGLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP 462
           ACMNSTSE KDGLSTFALKFKD S+VE+FRAAV  HK KA + VLKTPENSP
Sbjct: 421 ACMNSTSENKDGLSTFALKFKDGSVVEDFRAAVAAHKDKA-AIVLKTPENSP 435

[Close]

BLAST of CmoCh08G006450 vs. NCBI nr
Match: gi|802603873|ref|XP_012073316.1| (PREDICTED: nuclear pore complex protein NUP50A [Jatropha curcas])

HSP 1 Score: 438.7 bits (1127), Expect = 1.2e-119
Identity = 282/486 (58.02%), Postives = 343/486 (70.58%), Query Frame = 1


Query: 1   MGDAENATS-TKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRG 60
           MGDAE+    +KKRAAGRE+S+DNPGLDD+D+  E+ TGTFKRASDEVLA RRI+KVRR 
Sbjct: 1   MGDAEHTLPPSKKRAAGREISKDNPGLDDDDESVEEETGTFKRASDEVLASRRILKVRRN 60

Query: 61  QTASTPSSNPFAGIRLVPPTDNSG----SASEGKSTAQAVGEKTGSDEANGK-DVSHEEK 120
            T+STPSSNPFAGIRLVPPT+++     + +E  +T + V EK       GK D   + +
Sbjct: 61  PTSSTPSSNPFAGIRLVPPTESTTVPAVATTEVVTTTEEVSEK-------GKADAGEKAE 120

Query: 121 KDGDHNDEPAEHKIDTSEAESGTN-VQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQ 180
           K  D   +  E KI    AE+ T  V    +N+   +E+   KVDD   A          
Sbjct: 121 KGKDETGQHLESKIQEPAAETSTKEVAEDKENNNAANEATGSKVDDEKPA---------- 180

Query: 181 AGEDKTKNEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEK 240
              DK +NE+  GGD  E+     G + EN++ A G E E+ +   G    NK+  + + 
Sbjct: 181 ---DKVENEKAAGGDETESKIAAGGEEVENKNTADGEETEDVKAVGGGTSENKKV-EGDN 240

Query: 241 VEHEEKKEEGSE-ADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAG 300
            E++EKK+ GS+  D S E++ LSSFQQLSSSQNAFTGLAGTGFS +TFSFG+V KDG+ 
Sbjct: 241 TENKEKKDNGSQNEDPSTESAHLSSFQQLSSSQNAFTGLAGTGFSASTFSFGSVPKDGSS 300

Query: 301 ---------------LSSSFGLSNNGSSALFNT--SSTVSKSEKSGFPSMQEVAVETGEE 360
                           S  FGLS+NGSS++FNT  SS VSK+E +GFPSMQEV+VETGEE
Sbjct: 301 PGTITASLFGQKNDQSSFGFGLSSNGSSSIFNTTGSSVVSKNEGTGFPSMQEVSVETGEE 360

Query: 361 NERVVFNADSILFEFLDGSWKERGKGELKVNVPTIGTGRARILMRARGNYRLILNASLYP 420
           NERVVF+ADS+LFE+ +GSWKERGKGELKVNV T GT +AR+LMRARGNYRLILNASLYP
Sbjct: 361 NERVVFSADSVLFEYFNGSWKERGKGELKVNVSTAGTEKARLLMRARGNYRLILNASLYP 420

Query: 421 DMKLTNMDKKGITFACMNSTSEGKDGLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLK 462
           DMKLTNMDK+GITFACMNST E KDGLSTFALKFKDAS+VEEFRAA+T HK K ++TVLK
Sbjct: 421 DMKLTNMDKRGITFACMNSTGESKDGLSTFALKFKDASVVEEFRAAITAHKDK-TNTVLK 464

The following BLAST results are available for this feature:

BLAST of CmoCh08G006450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NU50B_ARATH	1.3e-81	46.17	Nuclear pore complex protein NUP50B OS=Arabidopsis thaliana GN=NUP50B PE=1 SV=1	[more]
NU50A_ARATH	1.5e-80	46.36	Nuclear pore complex protein NUP50A OS=Arabidopsis thaliana GN=NUP50A PE=1 SV=1	[more]
RNB3L_HUMAN	4.8e-07	35.40	Ran-binding protein 3-like OS=Homo sapiens GN=RANBP3L PE=2 SV=2	[more]
RNB3L_MOUSE	1.4e-06	29.24	Ran-binding protein 3-like OS=Mus musculus GN=Ranbp3l PE=1 SV=1	[more]

BLAST of CmoCh08G006450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAD0_CUCSA	9.0e-186	79.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446650 PE=4 SV=1	[more]
B9SQB9_RICCO	9.2e-122	60.81	Ran-binding protein, putative OS=Ricinus communis GN=RCOM_0980270 PE=4 SV=1	[more]
A0A067KLS2_JATCU	8.6e-120	58.02	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06252 PE=4 SV=1	[more]
A0A061GI24_THECC	8.6e-112	57.26	NUP50 protein, putative OS=Theobroma cacao GN=TCM_028672 PE=4 SV=1	[more]
B9GEK5_POPTR	8.6e-112	57.02	Ran-binding protein 1 domain-containing OS=Populus trichocarpa GN=POPTR_0001s179...	[more]

BLAST of CmoCh08G006450 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15970.1	7.5e-83	46.17	NUP50 (Nucleoporin 50 kDa) protein	[more]
AT1G52380.1	8.3e-82	46.36	NUP50 (Nucleoporin 50 kDa) protein	[more]

BLAST of CmoCh08G006450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659124390\|ref\|XP_008462135.1\|	6.2e-188	80.47	PREDICTED: E3 SUMO-protein ligase RanBP2 isoform X1 [Cucumis melo]	[more]
gi\|778729259\|ref\|XP_011659558.1\|	1.3e-185	79.18	PREDICTED: nuclear pore complex protein NUP50A [Cucumis sativus]	[more]
gi\|659124394\|ref\|XP_008462138.1\|	1.4e-179	79.21	PREDICTED: E3 SUMO-protein ligase RanBP2 isoform X2 [Cucumis melo]	[more]
gi\|255574554\|ref\|XP_002528188.1\|	1.3e-121	60.81	PREDICTED: nuclear pore complex protein NUP50A [Ricinus communis]	[more]
gi\|802603873\|ref\|XP_012073316.1\|	1.2e-119	58.02	PREDICTED: nuclear pore complex protein NUP50A [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000156	Ran_bind_dom
IPR011993	PH-like_dom_sf
IPR015007	NUP2/50/61

Vocabulary: **Biological Process**
Term	Definition
GO:0046907	intracellular transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0005643	nuclear pore

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046907	intracellular transport
cellular_component	GO:0005643	nuclear pore
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G006450.1	CmoCh08G006450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000156	Ran binding domain	PFAM	PF00638	Ran_BP1	coord: 330..446 score: 5.3
IPR000156	Ran binding domain	SMART	SM00160	ranbd_3	coord: 319..445 score: 7.1
IPR000156	Ran binding domain	PROFILE	PS50196	RANBD1	coord: 322..451 score: 18
IPR011993	PH domain-like	GENE3D	G3DSA:2.30.29.30		coord: 326..449 score: 7.7
IPR011993	PH domain-like	unknown	SSF50729	PH domain-like	coord: 322..449 score: 1.51
IPR015007	Nuclear pore complex, NUP2/50/61	PFAM	PF08911	NUP50	coord: 12..73 score: 8.1
None	No IPR available	PANTHER	PTHR23138	RAN BINDING PROTEIN	coord: 1..461 score: 2.9E
None	No IPR available	PANTHER	PTHR23138:SF99	PROTEIN RAN-5	coord: 1..461 score: 2.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh08G006450	CmaCh17G008180	Cucurbita maxima (Rimu)	cmacmoB375
CmoCh08G006450	CmaCh08G006820	Cucurbita maxima (Rimu)	cmacmoB912
CmoCh08G006450	Cla015426	Watermelon (97103) v1	cmowmB845
CmoCh08G006450	Csa7G446650	Cucumber (Chinese Long) v2	cmocuB901
CmoCh08G006450	MELO3C024224	Melon (DHL92) v3.5.1	cmomeB811
CmoCh08G006450	ClCG09G002210	Watermelon (Charleston Gray)	cmowcgB787
CmoCh08G006450	CSPI07G21200	Wild cucumber (PI 183967)	cmocpiB914
CmoCh08G006450	Lsi02G027750	Bottle gourd (USVL1VR-Ls)	cmolsiB810
CmoCh08G006450	Cp4.1LG12g08030	Cucurbita pepo (Zucchini)	cmocpeB839
CmoCh08G006450	Cp4.1LG17g05710	Cucurbita pepo (Zucchini)	cmocpeB853
CmoCh08G006450	MELO3C024224.2	Melon (DHL92) v3.6.1	cmomedB914
CmoCh08G006450	CsaV3_7G033090	Cucumber (Chinese Long) v3	cmocucB1067
CmoCh08G006450	Cla97C09G164360	Watermelon (97103) v2	cmowmbB918
CmoCh08G006450	CsGy7G019510	Cucumber (Gy14) v2	cgybcmoB956
CmoCh08G006450	Carg18816	Silver-seed gourd	carcmoB1018
CmoCh08G006450	Carg09544	Silver-seed gourd	carcmoB1379

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh08G006450	CmoCh17G007870	Cucurbita moschata (Rifu)	cmocmoB320

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh08G006450	Wild cucumber (PI 183967)	cmocpiB890
CmoCh08G006450	Melon (DHL92) v3.5.1	cmomeB823
CmoCh08G006450	Watermelon (Charleston Gray)	cmowcgB805
CmoCh08G006450	Watermelon (97103) v1	cmowmB855
CmoCh08G006450	Cucurbita pepo (Zucchini)	cmocpeB854
CmoCh08G006450	Bottle gourd (USVL1VR-Ls)	cmolsiB829
CmoCh08G006450	Silver-seed gourd	carcmoB0169
CmoCh08G006450	Silver-seed gourd	carcmoB0289
CmoCh08G006450	Watermelon (97103) v2	cmowmbB902
CmoCh08G006450	Wax gourd	cmowgoB1119
CmoCh08G006450	Cucurbita moschata (Rifu)	cmocmoB234
CmoCh08G006450	Cucurbita moschata (Rifu)	cmocmoB379
CmoCh08G006450	Cucumber (Gy14) v1	cgycmoB0989
CmoCh08G006450	Cucurbita maxima (Rimu)	cmacmoB280
CmoCh08G006450	Cucurbita maxima (Rimu)	cmacmoB491