CmoCh08G006210 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh08G006210
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPentatricopeptide repeat-containing family protein
LocationCmo_Chr08 : 3799369 .. 3800422 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACGCTTGGAATCGATGCTAGAGCTCCGGATTGAAGTGGAAGAGAAAGCTTACATTGCTTTGTTGAGGCTTTGCGAATGGAGAAGGGCGTCCGGTGAAGGGTATCGAGTTTACGAGCTTGTTTCGAGTTTGAAATCTCGATTGGGCATTCGGCTTGGTAATGTTTTGTTGAGTATGTTCGTCAGGTTTGGTAATTTAAGTGATGCCTGGTATGTGTTTGATAAAATGTCTGAGAGGGATGTGTTTTCTTGGAATGTGTTAGTGGGTGGGTATGCTAAAGCGGGGTGTTTCGATGAGGCTTTGAATTTGTACCATAGAAATGTTGTGGGCTGAAATTAGGCCTGATGTATATACTTTTCCCTCTGTTTTGAGAACTTGTGGTTGCGTTTCTGATATAGCTAGAGGTAAAGCGATTCATGCGCATGTCATTGGATTTGGATTTGAGTCGGATGTGGATGTGAGTAATGCTTTAATCTCTATGTACATGAAATGTGGCTACTTTAGTAATGCAAGGAAACTGTTTGATAAAATGCCGAAGAGAGATCGTATTTCGTGGAATGCGATGATTTCGGGGTACTTCGAAAATGGCGAGGTATTGGAAGGATTGAGGTTGTTTTTCATGATGCGTGAGCTTTCGGTTGACCCGGATTTGATGACTATGACTAGTGTAGCATCTGCGTGTGAGCTTCTTGGCGATGAGAAGTTAGGGAGAGAAATTCATGGATATGTAGTTAGGTCGGAGTTTGGGTGAATAATTCTTTGATTCATATGTATACAGGTCTTGGGCATTTGGAGGAAGCAGAGAAAGTCTTTTCCCGAATGGAGTTGAAAGACGTCGTATCGTGGACGACGATGATAGCAAGCTATGACAATCACAAGCTGCCTTATAAGGCTGTGGTAACTTATAAAATAATGGAGTTAGAGGATGTTTTGCGAGATGAGATTACTTTAGTTGATGTATTATCTGCTTGTGCTTGTTTAGGCCATTTGGATTTGGGTATTAGGCTACATGAGATTGCCATTAAGACTGGCCTCATATCACATGTCATAG

mRNA sequence

ATGAAACGCTTGGAATCGATGCTAGAGCTCCGGATTGAAGTGGAAGAGAAAGCTTACATTGCTTTGTTGAGGCTTTGCGAATGGAGAAGGGCGTCCGGTGAAGGGTATCGAGTTTACGAGCTTGTTTCGAGTTTGAAATCTCGATTGGGCATTCGGCTTGCTAGAGGTAAAGCGATTCATGCGCATGTCATTGGATTTGGATTTGAGTCGGATGTGGATGTGAGTAATGCTTTAATCTCTATGTACATGAAATGTGGCTACTTTAGTAATGCAAGGAAACTGTTTGATAAAATGCCGAAGAGAGATCGTATTTCGTGGAATGCGATGATTTCGGGGTACTTCGAAAATGGCGAGGTATTGGAAGGATTGAGGTTGTTTTTCATGATGCGTGAGCTTTCGGTTGACCCGGATTTGATGACTATGACTAGTCTTGGGCATTTGGAGGAAGCAGAGAAAGTCTTTTCCCGAATGGAGTTGAAAGACGTCGTATCGTGGACGACGATGATAGCAAGCTATGACAATCACAAGCTGCCTTATAAGGCTGTGGCCATTTGGATTTGGGTATTAGGCTACATGAGATTGCCATTAAGACTGGCCTCATATCACATGTCATAG

Coding sequence (CDS)

ATGAAACGCTTGGAATCGATGCTAGAGCTCCGGATTGAAGTGGAAGAGAAAGCTTACATTGCTTTGTTGAGGCTTTGCGAATGGAGAAGGGCGTCCGGTGAAGGGTATCGAGTTTACGAGCTTGTTTCGAGTTTGAAATCTCGATTGGGCATTCGGCTTGCTAGAGGTAAAGCGATTCATGCGCATGTCATTGGATTTGGATTTGAGTCGGATGTGGATGTGAGTAATGCTTTAATCTCTATGTACATGAAATGTGGCTACTTTAGTAATGCAAGGAAACTGTTTGATAAAATGCCGAAGAGAGATCGTATTTCGTGGAATGCGATGATTTCGGGGTACTTCGAAAATGGCGAGGTATTGGAAGGATTGAGGTTGTTTTTCATGATGCGTGAGCTTTCGGTTGACCCGGATTTGATGACTATGACTAGTCTTGGGCATTTGGAGGAAGCAGAGAAAGTCTTTTCCCGAATGGAGTTGAAAGACGTCGTATCGTGGACGACGATGATAGCAAGCTATGACAATCACAAGCTGCCTTATAAGGCTGTGGCCATTTGGATTTGGGTATTAGGCTACATGAGATTGCCATTAAGACTGGCCTCATATCACATGTCATAG
Homology
[Close]
BLAST of CmoCh08G006210 vs. Swiss-Prot
Match: PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 9.6e-32
Identity = 69/108 (63.89%), Postives = 83/108 (76.85%), Query Frame = 1 

Query: 38  VYELVSSLKSRLGIR-LARGKAIHAHVIGFGFESDVDVSNALISMYMKCGYFSNARKLFD 97
           VY     L++  GI  LARGK +H HV+ +G+E D+DV NALI+MY+KCG   +AR LFD
Sbjct: 196 VYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFD 255

Query: 98  KMPKRDRISWNAMISGYFENGEVLEGLRLFFMMRELSVDPDLMTMTSL 145
           +MP+RD ISWNAMISGYFENG   EGL LFF MR LSVDPDLMT+TS+
Sbjct: 256 RMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSV 303

[Close]
BLAST of CmoCh08G006210 vs. Swiss-Prot
Match: PP245_ARATH (Pentatricopeptide repeat-containing protein At3g21470 OS=Arabidopsis thaliana GN=PCMP-E29 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.2e-20
Identity = 62/164 (37.80%), Postives = 95/164 (57.93%), Query Frame = 1 

Query: 52  RLARGKAIHAHVIGFGFESDVDVSNALISMYMKCGYFSNARKLFDKMPKRDRISWNAMIS 111
           R+  GK +H+  I FG  SDV V ++LISMY KCG   +ARK+FD+MP+R+  +WNAMI 
Sbjct: 61  RVVLGKLLHSESIKFGVCSDVMVGSSLISMYGKCGCVVSARKVFDEMPERNVATWNAMIG 120

Query: 112 GYFENGEVLEGLRLFFMMRELSVDPDLMTMTSL--GH-----LEEAEKVFSRM--ELKDV 171
           GY  NG+ +    LF    E+SV  + +T   +  G+     +E+A ++F RM  ELK+V
Sbjct: 121 GYMSNGDAVLASGLF---EEISVCRNTVTWIEMIKGYGKRIEIEKARELFERMPFELKNV 180

Query: 172 VSWTTMIASYDNHK-----------LPYKAVAIW-IWVLGYMRL 195
            +W+ M+  Y N++           +P K   +W + + GY R+
Sbjct: 181 KAWSVMLGVYVNNRKMEDARKFFEDIPEKNAFVWSLMMSGYFRI 221

[Close]
BLAST of CmoCh08G006210 vs. Swiss-Prot
Match: PP321_ARATH (Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 2.4e-19
Identity = 49/120 (40.83%), Postives = 73/120 (60.83%), Query Frame = 1 

Query: 56  GKAIHAHVIGFGFESDVDVSNALISMYMKCGYFSNARKLFDKMPKRDRISWNAMISGYFE 115
           G+ IH   I  G  +DV V N L+++Y + GYF  ARK+ D+MP RD +SWN+++S Y E
Sbjct: 159 GRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLE 218

Query: 116 NGEVLEGLRLFFMMRELSVDP---DLMTMTSLGHLEEAEKVFSRMELKDVVSWTTMIASY 173
            G V E   LF  M E +V+     +    + G ++EA++VF  M ++DVVSW  M+ +Y
Sbjct: 219 KGLVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAY 278

[Close]
BLAST of CmoCh08G006210 vs. Swiss-Prot
Match: PP350_ARATH (Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.1e-19
Identity = 60/144 (41.67%), Postives = 80/144 (55.56%), Query Frame = 1 

Query: 45  LKSRLGIR-LARGKAIHAHVIGFGFESDVDVSNALISMYMKCGYFSNARKLFDKMPKRDR 104
           +KS  GI  L  GK IHA VI  GF SDV V N+LIS+YMK G   +A K+F++MP+RD 
Sbjct: 137 IKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDI 196

Query: 105 ISWNAMISGYFENGEVLEGLRLFFMMRELSVDPD-LMTMTSLGHLE-----------EAE 164
           +SWN+MISGY   G+    L LF  M +    PD   TM++LG                 
Sbjct: 197 VSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCH 256

Query: 165 KVFSRMELKDVVSWTTMIASYDNH 176
            V SR+E  DV+  T+++  Y  +
Sbjct: 257 AVRSRIETGDVMVMTSILDMYSKY 280

[Close]
BLAST of CmoCh08G006210 vs. Swiss-Prot
Match: PPR15_ARATH (Pentatricopeptide repeat-containing protein At1g06145 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 3.5e-18
Identity = 59/172 (34.30%), Postives = 88/172 (51.16%), Query Frame = 1 

Query: 19  YIALLRLCEWRRASGEGYRVYELV--SSLKSRLGIRLARGKAIHAHVIGFGFESDVDVSN 78
           Y+ +LR       S   Y    LV  SS  SR G      +++ AH+  FGF   V +  
Sbjct: 114 YVRMLR----DSVSPSSYTYSSLVKASSFASRFG------ESLQAHIWKFGFGFHVKIQT 173

Query: 79  ALISMYMKCGYFSNARKLFDKMPKRDRISWNAMISGYFENGEVLEGLRLFFMMRELSVDP 138
            LI  Y   G    ARK+FD+MP+RD I+W  M+S Y    ++     L   M E +   
Sbjct: 174 TLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEAT 233

Query: 139 D---LMTMTSLGHLEEAEKVFSRMELKDVVSWTTMIASYDNHKLPYKAVAIW 186
               +     LG+LE+AE +F++M +KD++SWTTMI  Y  +K   +A+A++
Sbjct: 234 SNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVF 275

[Close]
BLAST of CmoCh08G006210 vs. TrEMBL
Match: A0A0A0K739_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433910 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.3e-39
Identity = 99/188 (52.66%), Postives = 118/188 (62.77%), Query Frame = 1 

Query: 38  VYELVSSLKSRLGIR-LARGKAIHAHVIGFGFESDVDVSNALISMYMKCGYFSNARKLFD 97
           VY   S LK+  G+  +ARGK IHAHVI FGFESDVDV NALI+MY+KCG  SNAR LFD
Sbjct: 211 VYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFD 270

Query: 98  KMPKRDRISWNAMISGYFENGEVLEGLRLFFMMRELSVDPDLMTMTSL------------ 157
           KMPKRDRISWNAMISGYFENG  LEGL LF MMRELSVDPDL+TMT++            
Sbjct: 271 KMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERL 330

Query: 158 -----GHLEEAE------------KVFSRMELKDVV-------------SWTTMIASYDN 183
                G++ ++E            +++S +   +               SWT MIAS  +
Sbjct: 331 GRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVS 390

[Close]
BLAST of CmoCh08G006210 vs. TrEMBL
Match: A0A151SGN8_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_000166 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.6e-36
Identity = 88/172 (51.16%), Postives = 102/172 (59.30%), Query Frame = 1 

Query: 53  LARGKAIHAHVIGFGFESDVDVSNALISMYMKCGYFSNARKLFDKMPKRDRISWNAMISG 112
           L RG+ IH HV+  GFESDVDV NALI+MY+KCG  + AR +FDKMP RDRI+WNAMISG
Sbjct: 213 LVRGREIHVHVLRHGFESDVDVINALITMYVKCGDVNTARLVFDKMPYRDRITWNAMISG 272

Query: 113 YFENGEVLEGLRLFFMMRELSVDPDLMTMT------------------------------ 172
           YFENGE LEGLRLF  M E  VDPDLMTMT                              
Sbjct: 273 YFENGECLEGLRLFGRMIEHPVDPDLMTMTSVITACELLGDERLGRQIHGYVLRMKFGRD 332

Query: 173 ------------SLGHLEEAEKVFSRMELKDVVSWTTMIASYDNHKLPYKAV 183
                       S+G +EEAE VF   E +DVVSWT MI+ Y+N  +P KA+
Sbjct: 333 PSVHNSLIQMYSSVGLIEEAEMVFYHTECRDVVSWTAMISGYENSLMPQKAL 384

[Close]
BLAST of CmoCh08G006210 vs. TrEMBL
Match: A0A059AIA9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03030 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.6e-36
Identity = 86/171 (50.29%), Postives = 103/171 (60.23%), Query Frame = 1 

Query: 53  LARGKAIHAHVIGFGFESDVDVSNALISMYMKCGYFSNARKLFDKMPKRDRISWNAMISG 112
           LARG+ +H HVI  GFESDVDV NALI+MYMKCG   +AR +FD+M +RDRISWNAMISG
Sbjct: 211 LARGREVHVHVIRHGFESDVDVLNALITMYMKCGDVVSARLVFDRMSRRDRISWNAMISG 270

Query: 113 YFENGEVLEGLRLFFMMRELSVDPDLMTMT------------------------------ 172
           Y ENGE  EGLR F  M E  +DPD+MTMT                              
Sbjct: 271 YIENGECYEGLRQFIRMLECGIDPDIMTMTSVVSACEILMDGKIGREIHGYVIRTALGDV 330

Query: 173 -----------SLGHLEEAEKVFSRMELKDVVSWTTMIASYDNHKLPYKAV 183
                      S+G  EEAE VFSRME KDVVSWT+MI+ ++++ L  KA+
Sbjct: 331 SVANSLIQFYSSIGRGEEAEDVFSRMECKDVVSWTSMISCFEDNLLHEKAI 381

[Close]
BLAST of CmoCh08G006210 vs. TrEMBL
Match: M5XHF3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017680mg PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 9.3e-34
Identity = 90/172 (52.33%), Postives = 105/172 (61.05%), Query Frame = 1 

Query: 53  LARGKAIHAHVIGFGFESDVDVSNALISMYMKCGYFSNARKLFDKMPKRDRISWNAMISG 112
           LARG+ IH HVI FGFESDVDV NALI+MY+KC    +AR LFD+MP+RDRISWNAMISG
Sbjct: 127 LARGREIHVHVIRFGFESDVDVVNALITMYVKCSAVGSARMLFDRMPRRDRISWNAMISG 186

Query: 113 YFENGEVLE-----------------------------------GLRLF-FMMR-----E 172
           YFENGE LE                                   G  +  F+MR     +
Sbjct: 187 YFENGEFLEGLRLFLMMLESSVYPDLMTMTSLISACELLSDCKLGREIHGFVMRTEFAED 246

Query: 173 LSVDPDLMTMTSL-GHLEEAEKVFSRMELKDVVSWTTMIASYDNHKLPYKAV 183
           +SV   L+ M S+ GH EEAEKVFSR E KDVVSWT+MI+ Y N+ LP KAV
Sbjct: 247 VSVCNALIQMYSIIGHFEEAEKVFSRTEYKDVVSWTSMISCYGNNALPDKAV 298

[Close]
BLAST of CmoCh08G006210 vs. TrEMBL
Match: V4MTS5_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10006770mg PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 9.3e-34
Identity = 89/188 (47.34%), Postives = 110/188 (58.51%), Query Frame = 1 

Query: 38  VYELVSSLKSRLGIR-LARGKAIHAHVIGFGFESDVDVSNALISMYMKCGYFSNARKLFD 97
           VY     L++  GI  LARG+ +H HV+ +G+E D+DV NALI+MY+KCG   +AR LFD
Sbjct: 196 VYTFPCVLRTCGGIPDLARGREVHVHVLRYGYELDIDVVNALITMYVKCGDVKSARLLFD 255

Query: 98  KMPKRDRISWNAMISGYFENGEVLEGLRLFFMMRELSVDPDLMTMTS------------L 157
           +MP+RD ISWNAMISGYFENG   EGL+LFF MR LSVDPDLMT+TS            L
Sbjct: 256 RMPRRDIISWNAMISGYFENGMCHEGLKLFFAMRVLSVDPDLMTITSVISACALLGDGRL 315

Query: 158 GHLEEAEKVFS------------------------------RMELKDVVSWTTMIASYDN 183
           G    A  + S                              RME KD+VSWTTMI+ Y+ 
Sbjct: 316 GRDIHAYVISSGFAVDVSVCNSLTQMYLNAGSWREAEKVFTRMERKDIVSWTTMISGYEY 375

[Close]
BLAST of CmoCh08G006210 vs. TAIR10
Match: AT1G15510.1 (AT1G15510.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 138.3 bits (347), Expect = 5.4e-33
Identity = 69/108 (63.89%), Postives = 83/108 (76.85%), Query Frame = 1 

Query: 38  VYELVSSLKSRLGIR-LARGKAIHAHVIGFGFESDVDVSNALISMYMKCGYFSNARKLFD 97
           VY     L++  GI  LARGK +H HV+ +G+E D+DV NALI+MY+KCG   +AR LFD
Sbjct: 196 VYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFD 255

Query: 98  KMPKRDRISWNAMISGYFENGEVLEGLRLFFMMRELSVDPDLMTMTSL 145
           +MP+RD ISWNAMISGYFENG   EGL LFF MR LSVDPDLMT+TS+
Sbjct: 256 RMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSV 303

[Close]
BLAST of CmoCh08G006210 vs. TAIR10
Match: AT3G21470.1 (AT3G21470.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-21
Identity = 62/164 (37.80%), Postives = 95/164 (57.93%), Query Frame = 1 

Query: 52  RLARGKAIHAHVIGFGFESDVDVSNALISMYMKCGYFSNARKLFDKMPKRDRISWNAMIS 111
           R+  GK +H+  I FG  SDV V ++LISMY KCG   +ARK+FD+MP+R+  +WNAMI 
Sbjct: 61  RVVLGKLLHSESIKFGVCSDVMVGSSLISMYGKCGCVVSARKVFDEMPERNVATWNAMIG 120

Query: 112 GYFENGEVLEGLRLFFMMRELSVDPDLMTMTSL--GH-----LEEAEKVFSRM--ELKDV 171
           GY  NG+ +    LF    E+SV  + +T   +  G+     +E+A ++F RM  ELK+V
Sbjct: 121 GYMSNGDAVLASGLF---EEISVCRNTVTWIEMIKGYGKRIEIEKARELFERMPFELKNV 180

Query: 172 VSWTTMIASYDNHK-----------LPYKAVAIW-IWVLGYMRL 195
            +W+ M+  Y N++           +P K   +W + + GY R+
Sbjct: 181 KAWSVMLGVYVNNRKMEDARKFFEDIPEKNAFVWSLMMSGYFRI 221

[Close]
BLAST of CmoCh08G006210 vs. TAIR10
Match: AT4G18840.1 (AT4G18840.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-20
Identity = 49/120 (40.83%), Postives = 73/120 (60.83%), Query Frame = 1 

Query: 56  GKAIHAHVIGFGFESDVDVSNALISMYMKCGYFSNARKLFDKMPKRDRISWNAMISGYFE 115
           G+ IH   I  G  +DV V N L+++Y + GYF  ARK+ D+MP RD +SWN+++S Y E
Sbjct: 159 GRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLE 218

Query: 116 NGEVLEGLRLFFMMRELSVDP---DLMTMTSLGHLEEAEKVFSRMELKDVVSWTTMIASY 173
            G V E   LF  M E +V+     +    + G ++EA++VF  M ++DVVSW  M+ +Y
Sbjct: 219 KGLVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAY 278

[Close]
BLAST of CmoCh08G006210 vs. TAIR10
Match: AT4G35130.1 (AT4G35130.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 95.5 bits (236), Expect = 4.0e-20
Identity = 60/144 (41.67%), Postives = 80/144 (55.56%), Query Frame = 1 

Query: 45  LKSRLGIR-LARGKAIHAHVIGFGFESDVDVSNALISMYMKCGYFSNARKLFDKMPKRDR 104
           +KS  GI  L  GK IHA VI  GF SDV V N+LIS+YMK G   +A K+F++MP+RD 
Sbjct: 137 IKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDI 196

Query: 105 ISWNAMISGYFENGEVLEGLRLFFMMRELSVDPD-LMTMTSLGHLE-----------EAE 164
           +SWN+MISGY   G+    L LF  M +    PD   TM++LG                 
Sbjct: 197 VSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCH 256

Query: 165 KVFSRMELKDVVSWTTMIASYDNH 176
            V SR+E  DV+  T+++  Y  +
Sbjct: 257 AVRSRIETGDVMVMTSILDMYSKY 280

[Close]
BLAST of CmoCh08G006210 vs. TAIR10
Match: AT1G06150.1 (AT1G06150.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 93.2 bits (230), Expect = 2.0e-19
Identity = 59/172 (34.30%), Postives = 88/172 (51.16%), Query Frame = 1 

Query: 19   YIALLRLCEWRRASGEGYRVYELV--SSLKSRLGIRLARGKAIHAHVIGFGFESDVDVSN 78
            Y+ +LR       S   Y    LV  SS  SR G      +++ AH+  FGF   V +  
Sbjct: 859  YVRMLR----DSVSPSSYTYSSLVKASSFASRFG------ESLQAHIWKFGFGFHVKIQT 918

Query: 79   ALISMYMKCGYFSNARKLFDKMPKRDRISWNAMISGYFENGEVLEGLRLFFMMRELSVDP 138
             LI  Y   G    ARK+FD+MP+RD I+W  M+S Y    ++     L   M E +   
Sbjct: 919  TLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEAT 978

Query: 139  D---LMTMTSLGHLEEAEKVFSRMELKDVVSWTTMIASYDNHKLPYKAVAIW 186
                +     LG+LE+AE +F++M +KD++SWTTMI  Y  +K   +A+A++
Sbjct: 979  SNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVF 1020

[Close]
BLAST of CmoCh08G006210 vs. NCBI nr
Match: gi|659122291|ref|XP_008461062.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic [Cucumis melo])

HSP 1 Score: 191.4 bits (485), Expect = 1.5e-45
Identity = 110/188 (58.51%), Postives = 123/188 (65.43%), Query Frame = 1 

Query: 38  VYELVSSLKSRLGIR-LARGKAIHAHVIGFGFESDVDVSNALISMYMKCGYFSNARKLFD 97
           VY   S L++  G+  +ARGK IHAHVI FGFESDVDV NALI+MY+KCG  S AR LFD
Sbjct: 198 VYTFPSVLRTCGGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISKARILFD 257

Query: 98  KMPKRDRISWNAMISGYFENGEVLEGLRLFFMMRELSVDPDLMTMTSL------------ 157
           KMPKRDRI+WNAMISGYFENG  LEGLRLFFMMRELSVDPDL+TMTS+            
Sbjct: 258 KMPKRDRITWNAMISGYFENGGGLEGLRLFFMMRELSVDPDLITMTSVASACELLDNERL 317

Query: 158 -----GHLEEAE-------------------------KVFSRMELKDVVSWTTMIASYDN 183
                G++ + E                         KVFSRMELKDVVSWT MIAS  +
Sbjct: 318 GRGIHGYVVKLEFGGDVSMNNSLIKMYSSVGHLEEAEKVFSRMELKDVVSWTAMIASLVS 377

[Close]
BLAST of CmoCh08G006210 vs. NCBI nr
Match: gi|657971623|ref|XP_008377600.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic [Malus domestica])

HSP 1 Score: 189.1 bits (479), Expect = 7.5e-45
Identity = 102/172 (59.30%), Postives = 111/172 (64.53%), Query Frame = 1 

Query: 53  LARGKAIHAHVIGFGFESDVDVSNALISMYMKCGYFSNARKLFDKMPKRDRISWNAMISG 112
           LARG+ IH HVI FGFESDVDV NALI+MY+KCG    ARKLFDKMP+RDRISWNAMISG
Sbjct: 225 LARGREIHLHVIRFGFESDVDVVNALITMYVKCGALGTARKLFDKMPRRDRISWNAMISG 284

Query: 113 YFENGEVLEGLRLFFMMRELSVDPDLMTMTSL---------------------------- 172
           YFENGE LEGL+LF MMRE S+ PDLMTMTSL                            
Sbjct: 285 YFENGEFLEGLKLFLMMRESSIYPDLMTMTSLVSACELLGDDKLGREIHGYILRTEFAED 344

Query: 173 --------------GHLEEAEKVFSRMELKDVVSWTTMIASYDNHKLPYKAV 183
                         GH  EAEKVFSRME KDVVSWT+MI+ Y N+ LP KAV
Sbjct: 345 VSVCNSLIQMYSIIGHFTEAEKVFSRMEYKDVVSWTSMISCYGNNALPDKAV 396

[Close]
BLAST of CmoCh08G006210 vs. NCBI nr
Match: gi|778729190|ref|XP_004136076.2| (PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 6.2e-39
Identity = 99/188 (52.66%), Postives = 118/188 (62.77%), Query Frame = 1 

Query: 38  VYELVSSLKSRLGIR-LARGKAIHAHVIGFGFESDVDVSNALISMYMKCGYFSNARKLFD 97
           VY   S LK+  G+  +ARGK IHAHVI FGFESDVDV NALI+MY+KCG  SNAR LFD
Sbjct: 211 VYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFD 270

Query: 98  KMPKRDRISWNAMISGYFENGEVLEGLRLFFMMRELSVDPDLMTMTSL------------ 157
           KMPKRDRISWNAMISGYFENG  LEGL LF MMRELSVDPDL+TMT++            
Sbjct: 271 KMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERL 330

Query: 158 -----GHLEEAE------------KVFSRMELKDVV-------------SWTTMIASYDN 183
                G++ ++E            +++S +   +               SWT MIAS  +
Sbjct: 331 GRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVS 390

[Close]
BLAST of CmoCh08G006210 vs. NCBI nr
Match: gi|729334809|ref|XP_010537957.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic [Tarenaya hassleriana])

HSP 1 Score: 167.2 bits (422), Expect = 3.1e-38
Identity = 96/203 (47.29%), Postives = 122/203 (60.10%), Query Frame = 1 

Query: 25  LCEWRRASGEGYR--VYELVSSLKSRLGIR-LARGKAIHAHVIGFGFESDVDVSNALISM 84
           +C + R    G +  VY     L++  GI  LARG+ +H HV+  GFE +VDV NALI+M
Sbjct: 180 MCLYHRMLWVGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRHGFELNVDVVNALITM 239

Query: 85  YMKCGYFSNARKLFDKMPKRDRISWNAMISGYFENGEVLEGLRLFFMMRELSVDPDLMTM 144
           Y+KCG   +AR LFD++PKRD ISWNAMISGYFENG   EGL+LFF MRELSVDPDLMTM
Sbjct: 240 YVKCGDVKSARLLFDRLPKRDIISWNAMISGYFENGMCYEGLKLFFKMRELSVDPDLMTM 299

Query: 145 TSL-----------------GHL-------------------------EEAEKVFSRMEL 183
           TS+                 G++                         ++AE +FSRME 
Sbjct: 300 TSVVSACELLGDVRLGREIHGYIISSGFVVDISVCNSLMQMYLNSSSWQDAENLFSRMES 359

[Close]
BLAST of CmoCh08G006210 vs. NCBI nr
Match: gi|1012342808|gb|KYP54000.1| (hypothetical protein KK1_000166 [Cajanus cajan])

HSP 1 Score: 160.2 bits (404), Expect = 3.8e-36
Identity = 88/172 (51.16%), Postives = 102/172 (59.30%), Query Frame = 1 

Query: 53  LARGKAIHAHVIGFGFESDVDVSNALISMYMKCGYFSNARKLFDKMPKRDRISWNAMISG 112
           L RG+ IH HV+  GFESDVDV NALI+MY+KCG  + AR +FDKMP RDRI+WNAMISG
Sbjct: 213 LVRGREIHVHVLRHGFESDVDVINALITMYVKCGDVNTARLVFDKMPYRDRITWNAMISG 272

Query: 113 YFENGEVLEGLRLFFMMRELSVDPDLMTMT------------------------------ 172
           YFENGE LEGLRLF  M E  VDPDLMTMT                              
Sbjct: 273 YFENGECLEGLRLFGRMIEHPVDPDLMTMTSVITACELLGDERLGRQIHGYVLRMKFGRD 332

Query: 173 ------------SLGHLEEAEKVFSRMELKDVVSWTTMIASYDNHKLPYKAV 183
                       S+G +EEAE VF   E +DVVSWT MI+ Y+N  +P KA+
Sbjct: 333 PSVHNSLIQMYSSVGLIEEAEMVFYHTECRDVVSWTAMISGYENSLMPQKAL 384

The following BLAST results are available for this feature:
BLAST of CmoCh08G006210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPR45_ARATH9.6e-3263.89Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidop... [more]
PP245_ARATH2.2e-2037.80Pentatricopeptide repeat-containing protein At3g21470 OS=Arabidopsis thaliana GN... [more]
PP321_ARATH2.4e-1940.83Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN... [more]
PP350_ARATH7.1e-1941.67Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidop... [more]
PPR15_ARATH3.5e-1834.30Pentatricopeptide repeat-containing protein At1g06145 OS=Arabidopsis thaliana GN... [more]
BLAST of CmoCh08G006210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K739_CUCSA4.3e-3952.66Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433910 PE=4 SV=1[more]
A0A151SGN8_CAJCA2.6e-3651.16Uncharacterized protein OS=Cajanus cajan GN=KK1_000166 PE=4 SV=1[more]
A0A059AIA9_EUCGR7.6e-3650.29Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03030 PE=4 SV=1[more]
M5XHF3_PRUPE9.3e-3452.33Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017680mg PE=4 SV=1[more]
V4MTS5_EUTSA9.3e-3447.34Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10006770mg PE=4 SV=1[more]
BLAST of CmoCh08G006210 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G15510.15.4e-3363.89 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G21470.11.2e-2137.80 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT4G18840.11.4e-2040.83 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT4G35130.14.0e-2041.67 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G06150.12.0e-1934.30 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
BLAST of CmoCh08G006210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659122291|ref|XP_008461062.1|1.5e-4558.51PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic ... [more]
gi|657971623|ref|XP_008377600.1|7.5e-4559.30PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic ... [more]
gi|778729190|ref|XP_004136076.2|6.2e-3952.66PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic ... [more]
gi|729334809|ref|XP_010537957.1|3.1e-3847.29PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic ... [more]
gi|1012342808|gb|KYP54000.1|3.8e-3651.16hypothetical protein KK1_000166 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G006210.1CmoCh08G006210.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 76..101
score: 3.
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 102..144
score: 2.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 76..101
score: 9.4E-4coord: 104..137
score: 8.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 71..101
score: 9.043coord: 161..195
score: 6.062coord: 102..136
score: 11
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 53..185
score: 7.9
NoneNo IPR availablePANTHERPTHR24015:SF156SUBFAMILY NOT NAMEDcoord: 53..185
score: 7.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh08G006210Cp4.1LG12g07760Cucurbita pepo (Zucchini)cmocpeB835
CmoCh08G006210Carg23160Silver-seed gourdcarcmoB0199
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh08G006210Wax gourdcmowgoB1100
CmoCh08G006210Wax gourdcmowgoB1125
CmoCh08G006210Wax gourdcmowgoB1130
CmoCh08G006210Cucurbita moschata (Rifu)cmocmoB234
CmoCh08G006210Cucurbita moschata (Rifu)cmocmoB312
CmoCh08G006210Cucumber (Gy14) v1cgycmoB0081
CmoCh08G006210Cucurbita maxima (Rimu)cmacmoB280
CmoCh08G006210Cucurbita maxima (Rimu)cmacmoB367
CmoCh08G006210Cucurbita maxima (Rimu)cmacmoB913
CmoCh08G006210Wild cucumber (PI 183967)cmocpiB913
CmoCh08G006210Wild cucumber (PI 183967)cmocpiB919
CmoCh08G006210Cucumber (Chinese Long) v2cmocuB900
CmoCh08G006210Cucumber (Chinese Long) v2cmocuB901
CmoCh08G006210Cucumber (Chinese Long) v2cmocuB906
CmoCh08G006210Melon (DHL92) v3.5.1cmomeB808
CmoCh08G006210Melon (DHL92) v3.5.1cmomeB816
CmoCh08G006210Melon (DHL92) v3.5.1cmomeB823
CmoCh08G006210Watermelon (Charleston Gray)cmowcgB781
CmoCh08G006210Watermelon (Charleston Gray)cmowcgB786
CmoCh08G006210Watermelon (Charleston Gray)cmowcgB805
CmoCh08G006210Watermelon (97103) v1cmowmB839
CmoCh08G006210Watermelon (97103) v1cmowmB844
CmoCh08G006210Cucurbita pepo (Zucchini)cmocpeB839
CmoCh08G006210Cucurbita pepo (Zucchini)cmocpeB853
CmoCh08G006210Bottle gourd (USVL1VR-Ls)cmolsiB809
CmoCh08G006210Bottle gourd (USVL1VR-Ls)cmolsiB814
CmoCh08G006210Cucumber (Gy14) v2cgybcmoB955
CmoCh08G006210Cucumber (Gy14) v2cgybcmoB956
CmoCh08G006210Cucumber (Gy14) v2cgybcmoB961
CmoCh08G006210Melon (DHL92) v3.6.1cmomedB911
CmoCh08G006210Melon (DHL92) v3.6.1cmomedB921
CmoCh08G006210Silver-seed gourdcarcmoB1378
CmoCh08G006210Silver-seed gourdcarcmoB1379
CmoCh08G006210Cucumber (Chinese Long) v3cmocucB1066
CmoCh08G006210Cucumber (Chinese Long) v3cmocucB1067
CmoCh08G006210Cucumber (Chinese Long) v3cmocucB1072
CmoCh08G006210Watermelon (97103) v2cmowmbB917
CmoCh08G006210Watermelon (97103) v2cmowmbB912