CmoCh08G006200 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh08G006200
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPentatricopeptide repeat-containing family protein
LocationCmo_Chr08 : 3798412 .. 3799022 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAATCAACAAAACCAAATTCTGTAACTCTGATTATCGCCCTATCAACATGTGCTAGAATAGGAGCTCTAATGTGTGGAAAAGAGATTCATGCACATGTATGTAAGATGTAGAAGGCAGGTCCCTACACTAAACCAATTTAACACTCAAAAGAAAGACGCGACGGCGTGGAATATACTCCTTACAGGTTACCCCGAGTAGGGACATGACATGCTTGCTATTGAGCTATTCGAAAAGATGCTTGAATCAGAACAAAATCCAGACGAGATTACCTTTATTTCACTATTATGTGCTTGCAGCAGGTCAGGTATGGTATTGGAAGGTTTGGAGTATTTCAATGTAATGAAAACCAAGTTTAATCGAACTCCTTATCTGAAGCATTATGCTTGTGTGGTTGATCTACTCAGCCGTGTTGGTTGGCTGGACGATGCTTATGATTTCATACAAAGACATGCCAATTAAGCCAGATGCAGCCATATGGGGAGCCTTGCTAAATGCTTGCAGAATTCACAGAAACGTTGAGCTTGGAGAACTTGCAGCGACACGTGTATTTGAAAACGACGATAAAAGCGTCGTCGGGTACTATATTCTTCTCTGTTTAGGATGA

mRNA sequence

ATGAAGGAATCAACAAAACCAAATTCTGTAACTCTGATTATCGCCCTATCAACATGTGCTAGAATAGGAGCTCTAATGTGTGGAAAAGAGATTCATGCACATGGACATGACATGCTTGCTATTGAGCTATTCGAAAAGATGCTTGAATCAGAACAAAATCCAGACGAGATTACCTTTATTTCACTATTATGTGCTTGCAGCAGGTCAGCCGTGTTGGTTGGCTGGACGATGCTTATGATTTCATACAAAGACATGCCAATTAAGCCAGATGCAGCCATATGGGGAGCCTTGCTAAATGCTTGCAGAATTCACAGAAACGTTGAGCTTGGAGAACTTGCAGCGACACGTGTATTTGAAAACGACGATAAAAGCGTCGTCGGGTACTATATTCTTCTCTGTTTAGGATGA

Coding sequence (CDS)

ATGAAGGAATCAACAAAACCAAATTCTGTAACTCTGATTATCGCCCTATCAACATGTGCTAGAATAGGAGCTCTAATGTGTGGAAAAGAGATTCATGCACATGGACATGACATGCTTGCTATTGAGCTATTCGAAAAGATGCTTGAATCAGAACAAAATCCAGACGAGATTACCTTTATTTCACTATTATGTGCTTGCAGCAGGTCAGCCGTGTTGGTTGGCTGGACGATGCTTATGATTTCATACAAAGACATGCCAATTAAGCCAGATGCAGCCATATGGGGAGCCTTGCTAAATGCTTGCAGAATTCACAGAAACGTTGAGCTTGGAGAACTTGCAGCGACACGTGTATTTGAAAACGACGATAAAAGCGTCGTCGGGTACTATATTCTTCTCTGTTTAGGATGA
Homology
[Close]
BLAST of CmoCh08G006200 vs. Swiss-Prot
Match: PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-16
Identity = 49/131 (37.40%), Postives = 66/131 (50.38%), Query Frame = 1 

Query: 35  GHDMLAIELFEKMLESEQNPDEITFISLLCACSRSAVLVGWTMLMISYKDMPIKPDAAIW 94
           G   + +ELF++M++S   PDEITFISLLC CS+S ++    M     +D  + P+   +
Sbjct: 577 GQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKMEDYGVTPNLKHY 636

Query: 95  GA--------------------------------LLNACRIHRNVELGELAATRVFENDD 134
                                             LLNACRIH  ++LGEL+A  +FE D 
Sbjct: 637 ACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDK 696

[Close]
BLAST of CmoCh08G006200 vs. Swiss-Prot
Match: PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 4.1e-15
Identity = 49/132 (37.12%), Postives = 70/132 (53.03%), Query Frame = 1 

Query: 34  HGHDMLAIELFEKMLESEQNPDEITFISLLCACSRS-------------AVLVGWTMLMI 93
           HGH   A+ LF++ML+    PD ITF++LL ACS S                 G T  + 
Sbjct: 530 HGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLK 589

Query: 94  SY--------------------KDMPIKPDAAIWGALLNACRIHRNVELGELAATRVFEN 133
            Y                    K M ++PDA+IWGALL+ACR+H NV+LG++A+  +FE 
Sbjct: 590 HYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEV 649

[Close]
BLAST of CmoCh08G006200 vs. Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-14
Identity = 50/132 (37.88%), Postives = 68/132 (51.52%), Query Frame = 1 

Query: 34  HGHDMLAIELFEKMLESEQNPDEITFISLLCACSRSAVLV-GWTML-------------- 93
           HGH   A+ELF  M++S   P+ ITF+S+L ACS + + V GW                 
Sbjct: 366 HGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLE 425

Query: 94  ----MIS--------------YKDMPIKPDAAIWGALLNACRIHRNVELGELAATRVFEN 133
               M+                + M +KPD+ IW +LL ACRIH+NVEL E++  R+FE 
Sbjct: 426 HYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFEL 485

[Close]
BLAST of CmoCh08G006200 vs. Swiss-Prot
Match: PP405_ARATH (Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.9e-13
Identity = 48/143 (33.57%), Postives = 73/143 (51.05%), Query Frame = 1 

Query: 23  GALMCGKEIHAHGHDMLAIELFEKMLESEQNPDEITFISLLCACSRSAV----LVGWTML 82
           GAL+ G  +H  GH+  A+++F +M+ S   P+EITF S L ACS S +    L  +  +
Sbjct: 494 GALISGYGMHGDGHN--ALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFM 553

Query: 83  MISYKDM-----------------------------PIKPDAAIWGALLNACRIHRNVEL 133
           +  YK +                             P +P + +WGALL AC  H NV+L
Sbjct: 554 LEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTHENVQL 613

[Close]
BLAST of CmoCh08G006200 vs. Swiss-Prot
Match: PP323_ARATH (Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-11
Identity = 41/122 (33.61%), Postives = 59/122 (48.36%), Query Frame = 1 

Query: 40  AIELFEKMLESEQNPDEITFISLLCACSRSAVL-VGWTMLMISYK--------------- 99
           A++LF KM++ +  P+ ITF+++L AC+ S  L  GW    I  +               
Sbjct: 443 ALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMV 502

Query: 100 -----------------DMPIKPDAAIWGALLNACRIHRNVELGELAATRVFENDDKSVV 129
                            +M  KPDA IWGALLNAC+IHRNV++ E AA  +F  + +   
Sbjct: 503 DLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAA 562

[Close]
BLAST of CmoCh08G006200 vs. TrEMBL
Match: F6HX75_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g05690 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.0e-28
Identity = 89/216 (41.20%), Postives = 98/216 (45.37%), Query Frame = 1 

Query: 4   STKPNSVTLIIALSTCARIGALMCGKEI-------------------------------- 63
           S KPNSVTL+  LS CARIGAL CGKEI                                
Sbjct: 492 SLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPA 551

Query: 64  ---------------------HAHGHDMLAIELFEKMLESEQNPDEITFISLLCACSRSA 123
                                   G   LA+ELF KM+ES+ NPDEITF SLLCACSRS 
Sbjct: 552 WNQFNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSG 611

Query: 124 VLVGWTMLMIS---------------------------------YKDMPIKPDAAIWGAL 134
           ++        S                                  K MPI PD AIWGAL
Sbjct: 612 MVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGAL 671

[Close]
BLAST of CmoCh08G006200 vs. TrEMBL
Match: B9GWP3_POPTR (Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0003s05740g PE=4 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-27
Identity = 85/215 (39.53%), Postives = 105/215 (48.84%), Query Frame = 1 

Query: 5   TKPNSVTLIIALSTCARIGALMCGKEI--------------------------------- 64
           +KPNSVTLI ALS CAR+GALMCGKEI                                 
Sbjct: 410 SKPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTAL 469

Query: 65  --------------------HAHGHDMLAIELFEKMLESEQNPDEITFISLLCACSRSAV 124
                                  G   + +ELF++M+ESE NPD++TFISLLCACSRS +
Sbjct: 470 NQFNLNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGM 529

Query: 125 ----LVGWTMLMISY-----------------------------KDMPIKPDAAIWGALL 134
               L  +  + ++Y                             + MPIKPD AIWGALL
Sbjct: 530 VTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALL 589

[Close]
BLAST of CmoCh08G006200 vs. TrEMBL
Match: W9QBM9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016122 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.1e-26
Identity = 87/218 (39.91%), Postives = 104/218 (47.71%), Query Frame = 1 

Query: 1   MKESTKPNSVTLIIALSTCARIGALMCGKEI----------------------------- 60
           MK+  KPNSVTL+  LS CARIGALM GKEI                             
Sbjct: 497 MKQLVKPNSVTLVSVLSACARIGALMAGKEIHAHVLRTGVAFEGFLPNALLDMYVRCGRM 556

Query: 61  -----------------------HAHGHD-MLAIELFEKMLESEQNPDEITFISLLCACS 120
                                  HA      LA+ELF +M++S+  PDEITFI LLCACS
Sbjct: 557 GPAWNQFNSNEKDVAAWNILLTGHAQRRQGRLAVELFHRMVDSQVTPDEITFILLLCACS 616

Query: 121 RSAV----LVGWTMLMISY-----------------------------KDMPIKPDAAIW 133
           RS +    L  ++ +M  Y                             + MPI PDAAIW
Sbjct: 617 RSGMVTEGLEYFSSMMPYYYITPNLKHYACVVDLLGRAGRLDDAHEFIRKMPINPDAAIW 676

[Close]
BLAST of CmoCh08G006200 vs. TrEMBL
Match: W9SM30_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000697 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.1e-26
Identity = 87/218 (39.91%), Postives = 104/218 (47.71%), Query Frame = 1 

Query: 1   MKESTKPNSVTLIIALSTCARIGALMCGKEI----------------------------- 60
           MK+  KPNSVTL+  LS CARIGALM GKEI                             
Sbjct: 497 MKQLVKPNSVTLVSVLSACARIGALMAGKEIHAHVLRTGVAFEGFLPNALLDMYVRCGRM 556

Query: 61  -----------------------HAHGHD-MLAIELFEKMLESEQNPDEITFISLLCACS 120
                                  HA      LA+ELF +M++S+  PDEITFI LLCACS
Sbjct: 557 GPAWNQFNSNEKDVAAWNILLTGHAQRRQGRLAVELFHRMVDSQVTPDEITFILLLCACS 616

Query: 121 RSAV----LVGWTMLMISY-----------------------------KDMPIKPDAAIW 133
           RS +    L  ++ +M  Y                             + MPI PDAAIW
Sbjct: 617 RSGMVTEGLEYFSSMMPYYYITPNLKHYACVVDLLGRAGRLDDAHEFIRKMPINPDAAIW 676

[Close]
BLAST of CmoCh08G006200 vs. TrEMBL
Match: V7AQD0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G046200g PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.1e-26
Identity = 84/213 (39.44%), Postives = 96/213 (45.07%), Query Frame = 1 

Query: 6   KPNSVTLIIALSTCARIGALMCGKEI---------------------------------- 65
           KPNSVTL+  LS CARIGAL CGKEI                                  
Sbjct: 509 KPNSVTLVCILSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMGYAWK 568

Query: 66  -------------------HAHGHDMLAIELFEKMLESEQNPDEITFISLLCACSRSAVL 125
                                HG   LA E+F++M+ES   PDEITFIS+LCACSRS ++
Sbjct: 569 QFFSVDHDVTAWNILLTGYAEHGKGALASEVFQRMVESNIKPDEITFISILCACSRSGMV 628

Query: 126 VGWTMLMISYK---------------------------------DMPIKPDAAIWGALLN 133
                   S K                                  MP+KPDAAIWGALLN
Sbjct: 629 AEGLEYFNSMKYKYSITPNLKHYACVVDLLGRSGKLEEAYEYIQKMPLKPDAAIWGALLN 688

[Close]
BLAST of CmoCh08G006200 vs. TAIR10
Match: AT1G15510.1 (AT1G15510.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 85.9 bits (211), Expect = 2.1e-17
Identity = 49/131 (37.40%), Postives = 66/131 (50.38%), Query Frame = 1 

Query: 35  GHDMLAIELFEKMLESEQNPDEITFISLLCACSRSAVLVGWTMLMISYKDMPIKPDAAIW 94
           G   + +ELF++M++S   PDEITFISLLC CS+S ++    M     +D  + P+   +
Sbjct: 577 GQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKMEDYGVTPNLKHY 636

Query: 95  GA--------------------------------LLNACRIHRNVELGELAATRVFENDD 134
                                             LLNACRIH  ++LGEL+A  +FE D 
Sbjct: 637 ACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDK 696

[Close]
BLAST of CmoCh08G006200 vs. TAIR10
Match: AT4G33990.1 (AT4G33990.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 82.4 bits (202), Expect = 2.3e-16
Identity = 49/132 (37.12%), Postives = 70/132 (53.03%), Query Frame = 1 

Query: 34  HGHDMLAIELFEKMLESEQNPDEITFISLLCACSRS-------------AVLVGWTMLMI 93
           HGH   A+ LF++ML+    PD ITF++LL ACS S                 G T  + 
Sbjct: 530 HGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLK 589

Query: 94  SY--------------------KDMPIKPDAAIWGALLNACRIHRNVELGELAATRVFEN 133
            Y                    K M ++PDA+IWGALL+ACR+H NV+LG++A+  +FE 
Sbjct: 590 HYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEV 649

[Close]
BLAST of CmoCh08G006200 vs. TAIR10
Match: AT3G26782.1 (AT3G26782.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 80.9 bits (198), Expect = 6.7e-16
Identity = 50/132 (37.88%), Postives = 68/132 (51.52%), Query Frame = 1 

Query: 34  HGHDMLAIELFEKMLESEQNPDEITFISLLCACSRSAVLV-GWTML-------------- 93
           HGH   A+ELF  M++S   P+ ITF+S+L ACS + + V GW                 
Sbjct: 366 HGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLE 425

Query: 94  ----MIS--------------YKDMPIKPDAAIWGALLNACRIHRNVELGELAATRVFEN 133
               M+                + M +KPD+ IW +LL ACRIH+NVEL E++  R+FE 
Sbjct: 426 HYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFEL 485

[Close]
BLAST of CmoCh08G006200 vs. TAIR10
Match: AT5G39350.1 (AT5G39350.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 75.9 bits (185), Expect = 2.2e-14
Identity = 48/143 (33.57%), Postives = 73/143 (51.05%), Query Frame = 1 

Query: 23  GALMCGKEIHAHGHDMLAIELFEKMLESEQNPDEITFISLLCACSRSAV----LVGWTML 82
           GAL+ G  +H  GH+  A+++F +M+ S   P+EITF S L ACS S +    L  +  +
Sbjct: 494 GALISGYGMHGDGHN--ALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFM 553

Query: 83  MISYKDM-----------------------------PIKPDAAIWGALLNACRIHRNVEL 133
           +  YK +                             P +P + +WGALL AC  H NV+L
Sbjct: 554 LEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTHENVQL 613

[Close]
BLAST of CmoCh08G006200 vs. TAIR10
Match: AT4G19191.1 (AT4G19191.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 70.5 bits (171), Expect = 9.1e-13
Identity = 41/122 (33.61%), Postives = 59/122 (48.36%), Query Frame = 1 

Query: 40  AIELFEKMLESEQNPDEITFISLLCACSRSAVL-VGWTMLMISYK--------------- 99
           A++LF KM++ +  P+ ITF+++L AC+ S  L  GW    I  +               
Sbjct: 443 ALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMV 502

Query: 100 -----------------DMPIKPDAAIWGALLNACRIHRNVELGELAATRVFENDDKSVV 129
                            +M  KPDA IWGALLNAC+IHRNV++ E AA  +F  + +   
Sbjct: 503 DLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAA 562

[Close]
BLAST of CmoCh08G006200 vs. NCBI nr
Match: gi|1000969354|ref|XP_015573744.1| (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g15510, chloroplastic [Ricinus communis])

HSP 1 Score: 132.9 bits (333), Expect = 4.2e-28
Identity = 83/218 (38.07%), Postives = 105/218 (48.17%), Query Frame = 1 

Query: 1   MKESTKPNSVTLIIALSTCARIGALMCGKEI----------------------------- 60
           MK + KPNS+TLI  LS CARIGALMCGKEI                             
Sbjct: 497 MKRNLKPNSITLISVLSACARIGALMCGKEIHAHALKTAMVYEGFLPNAILDMYVRCGKL 556

Query: 61  ------------------------HAHGHDMLAIELFEKMLESEQNPDEITFISLLCACS 120
                                      G   +A+ELF KM+ES+ NPD++T+I+LLCACS
Sbjct: 557 GLALNQFNLYKEDVAAWNILMRGYAEQGQGAMAVELFHKMIESKVNPDDVTYIALLCACS 616

Query: 121 RSAV----LVGWTMLMISYKD----------------------------MPIKPDAAIWG 134
           RS +    L  +  + +++ D                            MPIKPD AIWG
Sbjct: 617 RSGMVEEGLEHFKSMKLNFIDPNLKHYACMVDLLGRAGKLKEAHEFIEKMPIKPDPAIWG 676

[Close]
BLAST of CmoCh08G006200 vs. NCBI nr
Match: gi|297743367|emb|CBI36234.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 132.1 bits (331), Expect = 7.2e-28
Identity = 89/216 (41.20%), Postives = 98/216 (45.37%), Query Frame = 1 

Query: 4   STKPNSVTLIIALSTCARIGALMCGKEI-------------------------------- 63
           S KPNSVTL+  LS CARIGAL CGKEI                                
Sbjct: 492 SLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPA 551

Query: 64  ---------------------HAHGHDMLAIELFEKMLESEQNPDEITFISLLCACSRSA 123
                                   G   LA+ELF KM+ES+ NPDEITF SLLCACSRS 
Sbjct: 552 WNQFNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSG 611

Query: 124 VLVGWTMLMIS---------------------------------YKDMPIKPDAAIWGAL 134
           ++        S                                  K MPI PD AIWGAL
Sbjct: 612 MVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGAL 671

[Close]
BLAST of CmoCh08G006200 vs. NCBI nr
Match: gi|359482660|ref|XP_002285225.2| (PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic [Vitis vinifera])

HSP 1 Score: 132.1 bits (331), Expect = 7.2e-28
Identity = 89/216 (41.20%), Postives = 98/216 (45.37%), Query Frame = 1 

Query: 4   STKPNSVTLIIALSTCARIGALMCGKEI-------------------------------- 63
           S KPNSVTL+  LS CARIGAL CGKEI                                
Sbjct: 492 SLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPA 551

Query: 64  ---------------------HAHGHDMLAIELFEKMLESEQNPDEITFISLLCACSRSA 123
                                   G   LA+ELF KM+ES+ NPDEITF SLLCACSRS 
Sbjct: 552 WNQFNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSG 611

Query: 124 VLVGWTMLMIS---------------------------------YKDMPIKPDAAIWGAL 134
           ++        S                                  K MPI PD AIWGAL
Sbjct: 612 MVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGAL 671

[Close]
BLAST of CmoCh08G006200 vs. NCBI nr
Match: gi|743893521|ref|XP_011039995.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic [Populus euphratica])

HSP 1 Score: 130.6 bits (327), Expect = 2.1e-27
Identity = 85/215 (39.53%), Postives = 105/215 (48.84%), Query Frame = 1 

Query: 5   TKPNSVTLIIALSTCARIGALMCGKEI--------------------------------- 64
           +KPNSVTLI ALS CAR+GALMCGKEI                                 
Sbjct: 502 SKPNSVTLISALSACARVGALMCGKEIHAHALKAGVGFDGFLPNAILDLYVRCGRMRTAL 561

Query: 65  --------------------HAHGHDMLAIELFEKMLESEQNPDEITFISLLCACSRSAV 124
                                  G   + +ELF++M+ESE NPD++TFISLLCACSRS +
Sbjct: 562 NQFNLNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGM 621

Query: 125 ----LVGWTMLMISY-----------------------------KDMPIKPDAAIWGALL 134
               L  +  + ++Y                             + MPIKPD AIWGALL
Sbjct: 622 VTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALL 681

[Close]
BLAST of CmoCh08G006200 vs. NCBI nr
Match: gi|566161047|ref|XP_002303270.2| (pentatricopeptide repeat-containing family protein [Populus trichocarpa])

HSP 1 Score: 130.6 bits (327), Expect = 2.1e-27
Identity = 85/215 (39.53%), Postives = 105/215 (48.84%), Query Frame = 1 

Query: 5   TKPNSVTLIIALSTCARIGALMCGKEI--------------------------------- 64
           +KPNSVTLI ALS CAR+GALMCGKEI                                 
Sbjct: 410 SKPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTAL 469

Query: 65  --------------------HAHGHDMLAIELFEKMLESEQNPDEITFISLLCACSRSAV 124
                                  G   + +ELF++M+ESE NPD++TFISLLCACSRS +
Sbjct: 470 NQFNLNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGM 529

Query: 125 ----LVGWTMLMISY-----------------------------KDMPIKPDAAIWGALL 134
               L  +  + ++Y                             + MPIKPD AIWGALL
Sbjct: 530 VTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALL 589

The following BLAST results are available for this feature:
BLAST of CmoCh08G006200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPR45_ARATH3.7e-1637.40Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidop... [more]
PP348_ARATH4.1e-1537.12Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN... [more]
PP258_ARATH1.2e-1437.88Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidop... [more]
PP405_ARATH3.9e-1333.57Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana GN... [more]
PP323_ARATH1.6e-1133.61Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidop... [more]
BLAST of CmoCh08G006200 vs. TrEMBL
Match NameE-valueIdentityDescription
F6HX75_VITVI5.0e-2841.20Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g05690 PE=4 SV=... [more]
B9GWP3_POPTR1.5e-2739.53Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POP... [more]
W9QBM9_9ROSA2.1e-2639.91Uncharacterized protein OS=Morus notabilis GN=L484_016122 PE=4 SV=1[more]
W9SM30_9ROSA2.1e-2639.91Uncharacterized protein OS=Morus notabilis GN=L484_000697 PE=4 SV=1[more]
V7AQD0_PHAVU8.1e-2639.44Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G046200g PE=4 SV=1[more]
BLAST of CmoCh08G006200 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G15510.12.1e-1737.40 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G33990.12.3e-1637.12 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G26782.16.7e-1637.88 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G39350.12.2e-1433.57 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G19191.19.1e-1333.61 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of CmoCh08G006200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1000969354|ref|XP_015573744.1|4.2e-2838.07PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g... [more]
gi|297743367|emb|CBI36234.3|7.2e-2841.20unnamed protein product [Vitis vinifera][more]
gi|359482660|ref|XP_002285225.2|7.2e-2841.20PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic ... [more]
gi|743893521|ref|XP_011039995.1|2.1e-2739.53PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic ... [more]
gi|566161047|ref|XP_002303270.2|2.1e-2739.53pentatricopeptide repeat-containing family protein [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009658 chloroplast organization
biological_process GO:0040007 growth
biological_process GO:0009451 RNA modification
cellular_component GO:0005575 cellular_component
cellular_component GO:0009507 chloroplast
molecular_function GO:0003674 molecular_function
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G006200.1CmoCh08G006200.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..133
score: 8.7
NoneNo IPR availablePANTHERPTHR24015:SF156SUBFAMILY NOT NAMEDcoord: 1..133
score: 8.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh08G006200Lsi02G027470Bottle gourd (USVL1VR-Ls)cmolsiB814
CmoCh08G006200MELO3C023386.2Melon (DHL92) v3.6.1cmomedB921
CmoCh08G006200CsaV3_7G032800Cucumber (Chinese Long) v3cmocucB1072
CmoCh08G006200Cla97C09G164660Watermelon (97103) v2cmowmbB912
CmoCh08G006200Bhi09G000055Wax gourdcmowgoB1130
CmoCh08G006200CsGy7G019210Cucumber (Gy14) v2cgybcmoB961
CmoCh08G006200Carg09561Silver-seed gourdcarcmoB1378
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh08G006200CmoCh17G008060Cucurbita moschata (Rifu)cmocmoB312
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh08G006200Cucurbita moschata (Rifu)cmocmoB234
CmoCh08G006200Cucumber (Gy14) v1cgycmoB0081
CmoCh08G006200Cucurbita maxima (Rimu)cmacmoB280
CmoCh08G006200Cucurbita maxima (Rimu)cmacmoB367
CmoCh08G006200Cucurbita maxima (Rimu)cmacmoB913
CmoCh08G006200Wild cucumber (PI 183967)cmocpiB913
CmoCh08G006200Wild cucumber (PI 183967)cmocpiB919
CmoCh08G006200Cucumber (Chinese Long) v2cmocuB900
CmoCh08G006200Cucumber (Chinese Long) v2cmocuB901
CmoCh08G006200Cucumber (Chinese Long) v2cmocuB906
CmoCh08G006200Melon (DHL92) v3.5.1cmomeB808
CmoCh08G006200Melon (DHL92) v3.5.1cmomeB816
CmoCh08G006200Melon (DHL92) v3.5.1cmomeB823
CmoCh08G006200Watermelon (Charleston Gray)cmowcgB781
CmoCh08G006200Watermelon (Charleston Gray)cmowcgB786
CmoCh08G006200Watermelon (Charleston Gray)cmowcgB805
CmoCh08G006200Watermelon (97103) v1cmowmB839
CmoCh08G006200Watermelon (97103) v1cmowmB844
CmoCh08G006200Cucurbita pepo (Zucchini)cmocpeB835
CmoCh08G006200Cucurbita pepo (Zucchini)cmocpeB839
CmoCh08G006200Cucurbita pepo (Zucchini)cmocpeB853
CmoCh08G006200Bottle gourd (USVL1VR-Ls)cmolsiB809
CmoCh08G006200Cucumber (Gy14) v2cgybcmoB955
CmoCh08G006200Cucumber (Gy14) v2cgybcmoB956
CmoCh08G006200Melon (DHL92) v3.6.1cmomedB911
CmoCh08G006200Silver-seed gourdcarcmoB0199
CmoCh08G006200Silver-seed gourdcarcmoB1379
CmoCh08G006200Cucumber (Chinese Long) v3cmocucB1066
CmoCh08G006200Cucumber (Chinese Long) v3cmocucB1067
CmoCh08G006200Watermelon (97103) v2cmowmbB917
CmoCh08G006200Wax gourdcmowgoB1100
CmoCh08G006200Wax gourdcmowgoB1125