CmoCh08G002390 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G002390
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transcription initiation factor TFIID subunit 1-A-like protein
Location	Cmo_Chr08 : 1446040 .. 1446804 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCTTCCAGATGAGCAAGGTGAATACCTTGAGGTGGTTTCTGAAGGGGAAAAATCTTTTGCAGAAGATGATCTACCGTCTGTCCCCTTCAATAATGAAGTTATAACCAGTAGTCCAGAAGAATTGTTTGAGGTTGGTTTACGATTTGATTTTTTATCATTTTGGATGTAGATTTCTCAAGGTGAATTTGTTTGTCATGTTAATGGTATTGGATCTTGTTTTGTTATCTTTTTTCTTCTATTATTTTGTTTTGACGAGAAACCTAAGTTTGTTGATTTCTTGTGTCCACCTTGAACTGTTGTTTCCTAACCTGATGCCCATTGTGACAGAGAACTGTGGTAAGTGTACCTAAGAAATCTAAATTGTTCAACCAGTTCGGTCTCTTTAAAGGTCAAACTTCGTTTTGTTATCTCTTCTTGCAACATAATTTATCGTTTTTAGTTGGGAGGTTATCAGTTTGTTTTAGACTTTGCATTGATACCACCATGTCTAAAGCTCGTTACTATTCTCTCGCGTAATTGTTAACAGGAGACACCTGAAGTAGAGAAGCGAATGCAAGAGGAGAAGGCTCATACTCCCTTACCTGTATTGTGCATGGAGAATGGGATGGCAATCTTACAATTTTCTGAAATTTTTGGTGTTCATGATAGTTTGAAGAAAAAGGAGAAGAGAGATTCTAGATATTGTTCTCGTAGAGGTGCATGTCCCACAAACATTATATGCGCTTCCTATTGTCTTTTTGATGTCATCTCAGAGCGTTAA

mRNA sequence

ATGATTCTTCCAGATGAGCAAGGTGAATACCTTGAGGTGGTTTCTGAAGGGGAAAAATCTTTTGCAGAAGATGATCTACCGTCTGTCCCCTTCAATAATGAAGTTATAACCAGTAGTCCAGAAGAATTGTTTGAGATTTCTCAAGGTGAATTTGTTTGTCATGAGACACCTGAAGTAGAGAAGCGAATGCAAGAGGAGAAGGCTCATACTCCCTTACCTGTATTGTGCATGGAGAATGGGATGGCAATCTTACAATTTTCTGAAATTTTTGGTGTTCATGATAGTTTGAAGAAAAAGGAGAAGAGAGATTCTAGATATTGTTCTCGTAGAGGTGCATGTCCCACAAACATTATATGCGCTTCCTATTGTCTTTTTGATGTCATCTCAGAGCGTTAA

Coding sequence (CDS)

ATGATTCTTCCAGATGAGCAAGGTGAATACCTTGAGGTGGTTTCTGAAGGGGAAAAATCTTTTGCAGAAGATGATCTACCGTCTGTCCCCTTCAATAATGAAGTTATAACCAGTAGTCCAGAAGAATTGTTTGAGATTTCTCAAGGTGAATTTGTTTGTCATGAGACACCTGAAGTAGAGAAGCGAATGCAAGAGGAGAAGGCTCATACTCCCTTACCTGTATTGTGCATGGAGAATGGGATGGCAATCTTACAATTTTCTGAAATTTTTGGTGTTCATGATAGTTTGAAGAAAAAGGAGAAGAGAGATTCTAGATATTGTTCTCGTAGAGGTGCATGTCCCACAAACATTATATGCGCTTCCTATTGTCTTTTTGATGTCATCTCAGAGCGTTAA

Homology

[Close]

BLAST of CmoCh08G002390 vs. Swiss-Prot
Match: TAF1_ARATH (Transcription initiation factor TFIID subunit 1 OS=Arabidopsis thaliana GN=TAF1 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-07
Identity = 36/112 (32.14%), Postives = 61/112 (54.46%), Query Frame = 1


Query: 5   DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHET---PEVEK 64
           DE+ E  E  +  EKS   +    V    +      EE   + + + +  E     EV++
Sbjct: 148 DEEEEQEEEQAPVEKSLETEKREPVVLKEDKALEYEEEASILDKEDHMDTEDVQEEEVDE 207

Query: 65  RMQ---EEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDSRYCSRR 111
            ++   ++K  TPLP L +E+GM ILQFSEIF +H+  +K+++R++RY + R
Sbjct: 208 LLEGTLDDKGATPLPTLYVEDGMVILQFSEIFAIHEPPQKRDRRENRYVTCR 259

[Close]

BLAST of CmoCh08G002390 vs. TrEMBL
Match: A0A0A0KA05_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G357030 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 9.9e-29
Identity = 72/106 (67.92%), Postives = 81/106 (76.42%), Query Frame = 1


Query: 5   DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQ 64
           DEQGE LE+VSEGEKS A   + S P NNEVIT   E L E          TPEV+KR+Q
Sbjct: 171 DEQGECLEIVSEGEKSLA---VESAPLNNEVITGRAESLHE---------GTPEVQKRLQ 230

Query: 65  EEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDSRYCSRR 111
           ++K+HTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKR SRY +R+
Sbjct: 231 DDKSHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRASRYYTRK 264

[Close]

BLAST of CmoCh08G002390 vs. TrEMBL
Match: F6H596_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g03940 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-13
Identity = 50/101 (49.50%), Postives = 62/101 (61.39%), Query Frame = 1


Query: 6   EQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQE 65
           EQGE+L VVSEGEKS  +D  P +    E +T   E++ E         E PE  +   E
Sbjct: 141 EQGEHLSVVSEGEKSPDDDLFPGL-LEPENLTGDLEDIPE---------EEPEGLEEPFE 200

Query: 66  EKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDSRY 107
            K   PLP+LC+E+GM IL+FSEIFG+H  LKK EKRD RY
Sbjct: 201 GKRSAPLPILCVEDGMVILRFSEIFGIHGPLKKGEKRDRRY 231

[Close]

BLAST of CmoCh08G002390 vs. TrEMBL
Match: B9HED4_POPTR (Ubiquitin family protein OS=Populus trichocarpa GN=POPTR_0007s03490g PE=4 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-09
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 1


Query: 44  FEISQGEFV-CHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKR 103
           FE S  EFV  HE      +   +K HTPLP+LC+E+GM IL+FSEIF +H+ LKK EKR
Sbjct: 185 FESSDVEFVDIHEEETDTVKGSLDKGHTPLPILCIEDGMEILRFSEIFSIHEPLKKGEKR 244

Query: 104 DSRY 107
           D RY
Sbjct: 245 DHRY 248

[Close]

BLAST of CmoCh08G002390 vs. TrEMBL
Match: A0A0D2USR3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G137400 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.6e-09
Identity = 42/106 (39.62%), Postives = 58/106 (54.72%), Query Frame = 1


Query: 5   DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQ 64
           DE  E  EVV E E+  A          ++V   S +   ++   E +  E P+  +   
Sbjct: 144 DEDEESEEVVVEPEEHLAATFEVGKSPGHDVHCGSSDSEDQVDGTEDL-QEEPDAPEEPL 203

Query: 65  EEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDSRYCSRR 111
           + K  TPLPVLC+E+GM IL+FSEIFG+H+ LKK  KRD  Y + R
Sbjct: 204 DSKGSTPLPVLCVEDGMVILRFSEIFGIHEPLKKAAKRDRGYFTHR 248

[Close]

BLAST of CmoCh08G002390 vs. TrEMBL
Match: A0A0D2UTN8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G137400 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.6e-09
Identity = 42/106 (39.62%), Postives = 58/106 (54.72%), Query Frame = 1


Query: 5   DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQ 64
           DE  E  EVV E E+  A          ++V   S +   ++   E +  E P+  +   
Sbjct: 144 DEDEESEEVVVEPEEHLAATFEVGKSPGHDVHCGSSDSEDQVDGTEDL-QEEPDAPEEPL 203

Query: 65  EEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDSRYCSRR 111
           + K  TPLPVLC+E+GM IL+FSEIFG+H+ LKK  KRD  Y + R
Sbjct: 204 DSKGSTPLPVLCVEDGMVILRFSEIFGIHEPLKKAAKRDRGYFTHR 248

[Close]

BLAST of CmoCh08G002390 vs. TAIR10
Match: AT1G32750.1 (AT1G32750.1 HAC13 protein (HAC13))

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-08
Identity = 36/112 (32.14%), Postives = 61/112 (54.46%), Query Frame = 1


Query: 5   DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHET---PEVEK 64
           DE+ E  E  +  EKS   +    V    +      EE   + + + +  E     EV++
Sbjct: 148 DEEEEQEEEQAPVEKSLETEKREPVVLKEDKALEYEEEASILDKEDHMDTEDVQEEEVDE 207

Query: 65  RMQ---EEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDSRYCSRR 111
            ++   ++K  TPLP L +E+GM ILQFSEIF +H+  +K+++R++RY + R
Sbjct: 208 LLEGTLDDKGATPLPTLYVEDGMVILQFSEIFAIHEPPQKRDRRENRYVTCR 259

[Close]

BLAST of CmoCh08G002390 vs. NCBI nr
Match: gi|778727071|ref|XP_011659205.1| (PREDICTED: transcription initiation factor TFIID subunit 1 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-28
Identity = 72/106 (67.92%), Postives = 81/106 (76.42%), Query Frame = 1


Query: 5   DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQ 64
           DEQGE LE+VSEGEKS A   + S P NNEVIT   E L E          TPEV+KR+Q
Sbjct: 171 DEQGECLEIVSEGEKSLA---VESAPLNNEVITGRAESLHE---------GTPEVQKRLQ 230

Query: 65  EEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDSRYCSRR 111
           ++K+HTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKR SRY +R+
Sbjct: 231 DDKSHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRASRYYTRK 264

[Close]

BLAST of CmoCh08G002390 vs. NCBI nr
Match: gi|659116430|ref|XP_008458069.1| (PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 7.0e-28
Identity = 70/106 (66.04%), Postives = 80/106 (75.47%), Query Frame = 1


Query: 5   DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQ 64
           DE+GE L++VSEGE+ FA  DL S   NNEV T   E L E          TPEV+KR+Q
Sbjct: 3   DERGEGLDIVSEGEEPFAVGDLQSALLNNEVTTGGAEGLHE---------GTPEVQKRLQ 62

Query: 65  EEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDSRYCSRR 111
           ++K+HTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKR SRY +RR
Sbjct: 63  DDKSHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRASRYYTRR 99

[Close]

BLAST of CmoCh08G002390 vs. NCBI nr
Match: gi|659116422|ref|XP_008458065.1| (PREDICTED: transcription initiation factor TFIID subunit 1 isoform X1 [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 7.0e-28
Identity = 70/106 (66.04%), Postives = 80/106 (75.47%), Query Frame = 1


Query: 5   DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQ 64
           DE+GE L++VSEGE+ FA  DL S   NNEV T   E L E          TPEV+KR+Q
Sbjct: 171 DERGEGLDIVSEGEEPFAVGDLQSALLNNEVTTGGAEGLHE---------GTPEVQKRLQ 230

Query: 65  EEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDSRYCSRR 111
           ++K+HTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKR SRY +RR
Sbjct: 231 DDKSHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRASRYYTRR 267

[Close]

BLAST of CmoCh08G002390 vs. NCBI nr
Match: gi|731408723|ref|XP_010656964.1| (PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Vitis vinifera])

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-13
Identity = 50/101 (49.50%), Postives = 62/101 (61.39%), Query Frame = 1


Query: 6   EQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQE 65
           EQGE+L VVSEGEKS  +D  P +    E +T   E++ E         E PE  +   E
Sbjct: 89  EQGEHLSVVSEGEKSPDDDLFPGL-LEPENLTGDLEDIPE---------EEPEGLEEPFE 148

Query: 66  EKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDSRY 107
            K   PLP+LC+E+GM IL+FSEIFG+H  LKK EKRD RY
Sbjct: 149 GKRSAPLPILCVEDGMVILRFSEIFGIHGPLKKGEKRDRRY 179

[Close]

BLAST of CmoCh08G002390 vs. NCBI nr
Match: gi|302143274|emb|CBI21835.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-13
Identity = 50/101 (49.50%), Postives = 62/101 (61.39%), Query Frame = 1


Query: 6   EQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQE 65
           EQGE+L VVSEGEKS  +D  P +    E +T   E++ E         E PE  +   E
Sbjct: 141 EQGEHLSVVSEGEKSPDDDLFPGL-LEPENLTGDLEDIPE---------EEPEGLEEPFE 200

Query: 66  EKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDSRY 107
            K   PLP+LC+E+GM IL+FSEIFG+H  LKK EKRD RY
Sbjct: 201 GKRSAPLPILCVEDGMVILRFSEIFGIHGPLKKGEKRDRRY 231

The following BLAST results are available for this feature:

BLAST of CmoCh08G002390 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TAF1_ARATH	3.1e-07	32.14	Transcription initiation factor TFIID subunit 1 OS=Arabidopsis thaliana GN=TAF1 ...	[more]

BLAST of CmoCh08G002390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA05_CUCSA	9.9e-29	67.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G357030 PE=4 SV=1	[more]
F6H596_VITVI	1.5e-13	49.50	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g03940 PE=4 SV=...	[more]
B9HED4_POPTR	1.0e-09	56.25	Ubiquitin family protein OS=Populus trichocarpa GN=POPTR_0007s03490g PE=4 SV=2	[more]
A0A0D2USR3_GOSRA	6.6e-09	39.62	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G137400 PE=4 SV=1	[more]
A0A0D2UTN8_GOSRA	6.6e-09	39.62	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G137400 PE=4 SV=1	[more]

BLAST of CmoCh08G002390 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32750.1	1.7e-08	32.14	HAC13 protein (HAC13)	[more]

BLAST of CmoCh08G002390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778727071\|ref\|XP_011659205.1\|	1.4e-28	67.92	PREDICTED: transcription initiation factor TFIID subunit 1 [Cucumis sativus]	[more]
gi\|659116430\|ref\|XP_008458069.1\|	7.0e-28	66.04	PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Cucumis m...	[more]
gi\|659116422\|ref\|XP_008458065.1\|	7.0e-28	66.04	PREDICTED: transcription initiation factor TFIID subunit 1 isoform X1 [Cucumis m...	[more]
gi\|731408723\|ref\|XP_010656964.1\|	2.2e-13	49.50	PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Vitis vin...	[more]
gi\|302143274\|emb\|CBI21835.3\|	2.2e-13	49.50	unnamed protein product [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G002390.1	CmoCh08G002390.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh08G002390	MELO3C021096	Melon (DHL92) v3.5.1	cmomeB810

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh08G002390	Cucurbita maxima (Rimu)	cmacmoB366
CmoCh08G002390	Cucurbita maxima (Rimu)	cmacmoB913
CmoCh08G002390	Wild cucumber (PI 183967)	cmocpiB913
CmoCh08G002390	Cucumber (Chinese Long) v2	cmocuB900
CmoCh08G002390	Watermelon (Charleston Gray)	cmowcgB785
CmoCh08G002390	Cucurbita pepo (Zucchini)	cmocpeB834
CmoCh08G002390	Cucurbita pepo (Zucchini)	cmocpeB851
CmoCh08G002390	Bottle gourd (USVL1VR-Ls)	cmolsiB809
CmoCh08G002390	Cucumber (Gy14) v2	cgybcmoB955
CmoCh08G002390	Melon (DHL92) v3.6.1	cmomedB913
CmoCh08G002390	Silver-seed gourd	carcmoB0022
CmoCh08G002390	Silver-seed gourd	carcmoB0119
CmoCh08G002390	Cucumber (Chinese Long) v3	cmocucB1066
CmoCh08G002390	Watermelon (97103) v2	cmowmbB916
CmoCh08G002390	Wax gourd	cmowgoB1128
CmoCh08G002390	Cucurbita moschata (Rifu)	cmocmoB311
CmoCh08G002390	Watermelon (97103) v1	cmowmB843