CmoCh07G013300 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G013300
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr07 : 7502527 .. 7503694 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGATCGCGTCCAGTAGAAGGCGAAGAACTCTCCACAGGTGACGCCGCCGCCGCCGCCGCTCCTGCCGCTGCTACTTCTACCGCTCCACCGCCACTGCCTACACCGCTACCACCGCTCTTCTTACGGGCGAACTGTGAGAAGTCGACCGGCTCCGGCACGTGCGGCGGCATAGCGCTTCTCACCAACGCCCAGTTCACTCCATCGAAGAACGGATGCTGTTTAATCTCAGTAGCGCCTCTTCTGTACGCGATTCTCTTTTGCGGCTCCTTCACAAGAAGGCCTCTGATCAGATCCCTCGCCTGTAGACTCACCTGCGGCGTCTCCGGGAATCTAAGCGGCTGTCCGACAACATTAAACAGAGTAGCTCTATTTCCAGATCCTTTAAACGGCGTTGTTCCGTGAAGAAGCTCGTAGAGGAAGATTCCAAATGTCCACCAGTCAACGGCGCTGCCATGGCCTTCGCCTTGGATGATCTCCGGCGCTAAATACTCGTGCGTGCCGACAAACGACATCGATCTAACATTCGTCGGCTCCGCCATGAGTTCCGGCAATGCTCCGCCGACGAAGAGGCCGAAGTCGGATTTCGACTTGCGATTCTTCTTGGAAGGGAGGATGCGAGGGAGGAAGTTGGAAGGCTGCATACATCCATGGACGGCGAACTCATCGTCGAGGATACCGCCGCTGCCGCCACCGTTGGTGCCGGCGTGTCCGGTGGTGGAGCTGCCATTGACATTGACGGAGGAGGATTTGACGAGAGTAGGGCTGACGGAGCAGCGGAGAGAGAGGTCGAAATCGGAGAGCATGATGTGGCCTTCGTCTCGGATTAACAGGTTCTCTGGTTTCAAATCTCTGTAAACTATTCCTAACATGTGAAGATATTCGAGTGCTAATAGAACTTCTGATGCATAGAATCTGAAATTATGAATCAAGAACTTGTGATTAAGCAAAATCCAAGAGTTTTCAAATTAAGAATCGAAGAATCGGAAATGATGATATGAACATGAACATGAACCTGGCAGCTTCTTCTGTGAAATACTTGTTAGGTTGTTTCTGACGAAGAGAATGAAGATTTCCGCCGCTACAAAACTCCATAACCAAGCAATAGAACTTATCAGTTTCGAAATAGGAATACAGAGTCGGCAAAAATGGATGATCCAAAAGCCCTAA

mRNA sequence

GGGATCGCGTCCAGTAGAAGGCGAAGAACTCTCCACAGGTGACGCCGCCGCCGCCGCCGCTCCTGCCGCTGCTACTTCTACCGCTCCACCGCCACTGCCTACACCGCTACCACCGCTCTTCTTACGGGCGAACTGTGAGAAGTCGACCGGCTCCGGCACGTGCGGCGGCATAGCGCTTCTCACCAACGCCCAGTTCACTCCATCGAAGAACGGATGCTGTTTAATCTCAGTAGCGCCTCTTCTGTACGCGATTCTCTTTTGCGGCTCCTTCACAAGAAGGCCTCTGATCAGATCCCTCGCCTGTAGACTCACCTGCGGCGTCTCCGGGAATCTAAGCGGCTGTCCGACAACATTAAACAGAGTAGCTCTATTTCCAGATCCTTTAAACGGCGTTGTTCCGTGAAGAAGCTCGTAGAGGAAGATTCCAAATGTCCACCAGTCAACGGCGCTGCCATGGCCTTCGCCTTGGATGATCTCCGGCGCTAAATACTCGTGCGTGCCGACAAACGACATCGATCTAACATTCGTCGGCTCCGCCATGAGTTCCGGCAATGCTCCGCCGACGAAGAGGCCGAAGTCGGATTTCGACTTGCGATTCTTCTTGGAAGGGAGGATGCGAGGGAGGAAGTTGGAAGGCTGCATACATCCATGGACGGCGAACTCATCGTCGAGGATACCGCCGCTGCCGCCACCGTTGGTGCCGGCGTGTCCGGTGGTGGAGCTGCCATTGACATTGACGGAGGAGGATTTGACGAGAGTAGGGCTGACGGAGCAGCGGAGAGAGAGGTCGAAATCGGAGAGCATGATGTGGCCTTCGTCTCGGATTAACAGGTTGTTTCTGACGAAGAGAATGAAGATTTCCGCCGCTACAAAACTCCATAACCAAGCAATAGAACTTATCAGTTTCGAAATAGGAATACAGAGTCGGCAAAAATGGATGATCCAAAAGCCCTAA

Coding sequence (CDS)

ATGATCTCCGGCGCTAAATACTCGTGCGTGCCGACAAACGACATCGATCTAACATTCGTCGGCTCCGCCATGAGTTCCGGCAATGCTCCGCCGACGAAGAGGCCGAAGTCGGATTTCGACTTGCGATTCTTCTTGGAAGGGAGGATGCGAGGGAGGAAGTTGGAAGGCTGCATACATCCATGGACGGCGAACTCATCGTCGAGGATACCGCCGCTGCCGCCACCGTTGGTGCCGGCGTGTCCGGTGGTGGAGCTGCCATTGACATTGACGGAGGAGGATTTGACGAGAGTAGGGCTGACGGAGCAGCGGAGAGAGAGGTCGAAATCGGAGAGCATGATGTGGCCTTCGTCTCGGATTAACAGGTTGTTTCTGACGAAGAGAATGAAGATTTCCGCCGCTACAAAACTCCATAACCAAGCAATAGAACTTATCAGTTTCGAAATAGGAATACAGAGTCGGCAAAAATGGATGATCCAAAAGCCCTAA
Homology
[Close]
BLAST of CmoCh07G013300 vs. TrEMBL
Match: A0A151QP07_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_047378 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.4e-18
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 1 

Query: 1  MISGAKYSCVPTNDIDLTFVGSAMSSGNAPPTKRPKSDFDLRFFLEGRMRGRKLEGCIHP 60
          +ISGA+YSCVPT DIDLTFVGSA+SSG  PPT RPKSDFDLRFF   +MRG+KLE  + P
Sbjct: 34 IISGARYSCVPTKDIDLTFVGSAISSGRLPPTMRPKSDFDLRFFFGCKMRGKKLEDSMQP 93

Query: 61 WT 63
          +T
Sbjct: 94 YT 95

[Close]
BLAST of CmoCh07G013300 vs. TrEMBL
Match: T1LK88_TRIUA (Uncharacterized protein OS=Triticum urartu PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.0e-11
Identity = 59/125 (47.20%), Postives = 69/125 (55.20%), Query Frame = 1 

Query: 1   MISGAKYSCVPTNDIDLTFVGSAMSSGNAPPTKRPKSDFDLRFFLE-GRMRGRK-LEGCI 60
           +ISGAKYSCVPTNDID   +GSAMSSG+   T    S F  R F +  + RG K + G +
Sbjct: 17  IISGAKYSCVPTNDIDRASLGSAMSSGHGR-TWLTTSGFGFRSFFDFEKNRGPKHVVGAV 76

Query: 61  HPWTANSSSRIPPLPPPLVPACPVVELPLTLTEEDLTRVGLTEQRRERSKSESMMWPSSR 120
           H                   A  V  L      +DL RVGLT QRRERSKS+SMM PSSR
Sbjct: 77  HDGCIMQDGS----------AASVSGL------DDLIRVGLTVQRRERSKSDSMMCPSSR 123

Query: 121 INRLF 124
             R+F
Sbjct: 137 -TRMF 123

[Close]
BLAST of CmoCh07G013300 vs. TrEMBL
Match: A0A0A9IYV1_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-07
Identity = 47/119 (39.50%), Postives = 61/119 (51.26%), Query Frame = 1 

Query: 1   MISGAKYSCVPTNDIDLTFVGSAMSSGNAPPTKRPKSDFDLRFFLEGRMRGRKLEGCIHP 60
           MISGA+YS VPTN+ DL  VGS  S G+    +           +E   RG K E  +  
Sbjct: 1   MISGARYSWVPTNESDLASVGSTTSCGSDGFFRGSALGLRALDVVEETSRGVKQEELLQD 60

Query: 61  -WTANSSSRIPPLPPPLVPACPVVELPLTLTEEDLTRVGLTEQRRERSKSESMMWPSSR 119
            W  + S ++    P  +    V       T++DLT +G TE  R+RSKSESMM PSSR
Sbjct: 61  GWIHSGSMQLCAQGPEGLLGSSVP------TDDDLTSIGFTEHLRDRSKSESMMCPSSR 113

[Close]
BLAST of CmoCh07G013300 vs. NCBI nr
Match: gi|1012318767|gb|KYP32038.1| (hypothetical protein KK1_047378, partial [Cajanus cajan])

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 1 

Query: 1  MISGAKYSCVPTNDIDLTFVGSAMSSGNAPPTKRPKSDFDLRFFLEGRMRGRKLEGCIHP 60
          +ISGA+YSCVPT DIDLTFVGSA+SSG  PPT RPKSDFDLRFF   +MRG+KLE  + P
Sbjct: 34 IISGARYSCVPTKDIDLTFVGSAISSGRLPPTMRPKSDFDLRFFFGCKMRGKKLEDSMQP 93

Query: 61 WT 63
          +T
Sbjct: 94 YT 95

The following BLAST results are available for this feature:
BLAST of CmoCh07G013300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh07G013300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A151QP07_CAJCA7.4e-1872.58Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_047378 PE=4 SV=1[more]
T1LK88_TRIUA3.0e-1147.20Uncharacterized protein OS=Triticum urartu PE=4 SV=1[more]
A0A0A9IYV1_ARUDO3.4e-0739.50Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
BLAST of CmoCh07G013300 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh07G013300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1012318767|gb|KYP32038.1|1.1e-1772.58hypothetical protein KK1_047378, partial [Cajanus cajan][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G013300.1CmoCh07G013300.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G013300Cucumber (Chinese Long) v3cmocucB1001
CmoCh07G013300Watermelon (97103) v2cmowmbB869
CmoCh07G013300Wax gourdcmowgoB1060
CmoCh07G013300Wax gourdcmowgoB1068
CmoCh07G013300Cucurbita moschata (Rifu)cmocmoB461
CmoCh07G013300Cucumber (Gy14) v1cgycmoB0975
CmoCh07G013300Cucurbita maxima (Rimu)cmacmoB674
CmoCh07G013300Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G013300Wild cucumber (PI 183967)cmocpiB858
CmoCh07G013300Cucumber (Chinese Long) v2cmocuB849
CmoCh07G013300Melon (DHL92) v3.5.1cmomeB790
CmoCh07G013300Melon (DHL92) v3.5.1cmomeB795
CmoCh07G013300Watermelon (Charleston Gray)cmowcgB771
CmoCh07G013300Watermelon (97103) v1cmowmB819
CmoCh07G013300Cucurbita pepo (Zucchini)cmocpeB803
CmoCh07G013300Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G013300Bottle gourd (USVL1VR-Ls)cmolsiB780
CmoCh07G013300Cucumber (Gy14) v2cgybcmoB539
CmoCh07G013300Melon (DHL92) v3.6.1cmomedB897
CmoCh07G013300Silver-seed gourdcarcmoB0395
CmoCh07G013300Silver-seed gourdcarcmoB1159