CmoCh07G010580 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G010580
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr07 : 5383544 .. 5385912 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACACTGGTTGAGGGGGTTCGTCCCCAAGGTCGTGGAACTGTTGTGTATGTCGGAAACATGGAATGGAATGGAGGGGTTATGCATTTGGACAAGCAAGAGCCATTGGTGTGAGCAATTTCTCAACAAAGAAGCTCTAGATTTGCTCAAAACTGCAAAAGTTTGCAAGGAGCTGACTAAAGAAGAGAGTTGGTTGATGGGTCTGGCATATTCTCCATTCGGATCGCCCCTATGTGACAACGAGCTTCAAAATCCCCCACCTCGACCTGTACTTACATTCATCTGAAAAAAAAAGAAGGGAAAAGGAGTGAGTATAAAATACTTAGTAAACAAGTTACCTGTAGTCTCTTGTCACATCCTTAACCTAGTAGGTATCTACGGACTTTTTATTGGGCTCTAAGAAGTTCGAGCCTAATCTTTACTACTATATGAGCATTTGGAGTGCCTCGAAGTTTCAAGCAAGTCTATGTTTTAAATCTTATCTCCTAAGAGTTTGTATAAGCTTTACGACCTTACTGTTACTTGATTAGGGTAGCTTCTTTTGTCGATGCAATGTGAAATCGATGTCTTGGGTTGAAGCGCTACTTCATAAAAATTTGATGGGACAACATGGTGTTTGCTAATTTGAACATCATCCGTGGAAGGTTAGCTGGGTGATCCTCCCATAGGATCATAAAGTCTCTCTCGTTTGGGGGGGAGTGACCTCCATGTACTGGTCAACTACTGTGTCAACCTATGTGGTCCCACACCCCCTCTCAAAAACAAGTTTATAGCTCAGTGGCCTTGTTTAGGAGACTCCTAACCATTTCCACAAGGTCGGGACATGCATTACCCTAATCGGCCTAGGCCTAGCTCGACAATATTGATATTGGAGTGGAAAGGATAGTGGAGACTATGATAACATCGTCTCTGTTGTTTATAGCTTGGAGGGTTACCTTAGTCATTCTTGGATGCCATGGAAGTTTACTAAGATTCTTAAGGGCGTCTAGGCTGTTTAAATCTCATTTGTCATTTCAAGACGTTTAGGGACTATCTTCTCAAGCTTATTATTCTGTGGATGCACATAAATCTAAACCTCTGAATCGTCGCTCACAATTCTAGGGTACTCAGTCTACTAAAAATGTACTACTTTAGGTCAGCTCGAAACCGCTCTAAATCTTGTGTCCTAATTTTAACGTAGTTCTCTTGTACATGTCTTATTATGAAGGTCATCCTATCAATCACCCCAAACATAATATACATAATCAATGATATACATAATTAAAATATTGGAACAAATTAACTAGGGAGATAAATGCTATTAATCACCTAAAGTACTAAAAATATAAACTAAAATATTTAAAGAAACTCAAATATTTAAACCAACTGAACGGGAAGATAATATTCGTTTAAGTATCTAACTGAAACGGTCTTTTAAGGATGGCCCTTCCTAATATGTCTTTTAAAAATCTCAAATATAATTATTAAACTCGTATTATAAGTCCCCACTTCATGATTTGTATGTCATATATATCTATAGTATTATATTACAATTGGGACTAAACATATATGAAGAAATTGACCTGTTTCTATATGAAGTTTAATGAATGTTTAAATGCTCAAATCTAATTATTAAATATAGAATGTGTATACATGTTTTGAGACGTGGAGCTCCTTCTTCCCAACTTGTAAATTGTTTTAGTTATCATATCAACACAAAAGAGTGGTAATAGAGGATGAGAAAAAACCCCTTACAAATCAAATTAAAGGATTAACAACCAAAAATAAATTCAGTCAAGGCACCAATTGCTAAGTTCCCAACGAGGGAAAACATTGTAGTACCAAACAGCGATCCCAAACTCGACGAAGGTGCATGTTCGTGTCCATGACAATGACAATGACCATGTCCGTTGCTTTGTCCATGGCCTTGTCCATGTCCTTGGCCATGTCCGTGGTTGTGTCCGTGTCCGTGTCCTTGTCCTTGTCCGTGGTTGTGTCCGTGTCCGTGTCCTTGTCCTTGTCCGTGTCCATGTCCGTGTCCTTGTCCGTGTCCATGTCCATGTCCTTGGCCGTGTCCGTGTCCGTGTCCGTGTCCGTGTCCATGTCCTTGTCCGTGTCCTTGTCCGTGTCCACCATGATTTGGGTGATGACTTGGATGGTTGTTATGTACAAATGGAACAGGTCCAAGATGCCCAAAATGGTTACTCGGATGTTCCCAACCGTGACCATTTGGGAAAGCCCACCCACCAGCGGGAAAGCCACCAGGAAAATGAGGTGGCCCCGTCACCCACGGTGGCGGCGGTGCATGGTGATGGTTATGTATCCCACGTGAACCGGACGGCTGGTCGGTTTTCTCTCGCGAACCTAACGGCTTTAGGAGGCATCTAA

mRNA sequence

ATGAAACACTGGTTGAGGGGGTTCGTCCCCAAGGTCGTGGAACTGTTGTGTATGTCGGAAACATGGAATGGAATGGAGGGGTTATGCATTTGGACAAGCAAGAGCCATTGGTGTGAGCAATTTCTCAACAAAGAAGCTCTAGATTTGCTCAAAACTGCAAAATACCAAACAGCGATCCCAAACTCGACGAAGGTGCATGTTCGTGTCCATGACAATGACAATGACCATGTCCGTTGCTTTGTCCATGGCCTTGTCCATGTCCTTGGCCATGTCCGTGGTTGTGTCCGTGTCCGTGTCCTTGTCCTTGTCCGTGGTTGTGTCCGTGTCCGTGTCCTTGTCCTTGTCCGTGTCCATGTCCGTGTCCTTGTCCGTGTCCATGTCCATGTCCTTGGCCGTGTCCGTGTCCGTGTCCGTGTCCGTGTCCATGTCCTTGTCCGTGTCCTTGTCCGTGTCCACCATGATTTGGGTGATGACTTGGATGGTTGTTATGTACAAATGGAACAGGTCCAAGATGCCCAAAATGGTTACTCGGATGTTCCCAACCGTGACCATTTGGGAAAGCCCACCCACCAGCGGGAAAGCCACCAGGAAAATGAGGTGGCCCCGTCACCCACGGTGGCGGCGGTGCATGGTGATGGTTATGTATCCCACGTGAACCGGACGGCTGGTCGGTTTTCTCTCGCGAACCTAACGGCTTTAGGAGGCATCTAA

Coding sequence (CDS)

ATGAAACACTGGTTGAGGGGGTTCGTCCCCAAGGTCGTGGAACTGTTGTGTATGTCGGAAACATGGAATGGAATGGAGGGGTTATGCATTTGGACAAGCAAGAGCCATTGGTGTGAGCAATTTCTCAACAAAGAAGCTCTAGATTTGCTCAAAACTGCAAAATACCAAACAGCGATCCCAAACTCGACGAAGGTGCATGTTCGTGTCCATGACAATGACAATGACCATGTCCGTTGCTTTGTCCATGGCCTTGTCCATGTCCTTGGCCATGTCCGTGGTTGTGTCCGTGTCCGTGTCCTTGTCCTTGTCCGTGGTTGTGTCCGTGTCCGTGTCCTTGTCCTTGTCCGTGTCCATGTCCGTGTCCTTGTCCGTGTCCATGTCCATGTCCTTGGCCGTGTCCGTGTCCGTGTCCGTGTCCGTGTCCATGTCCTTGTCCGTGTCCTTGTCCGTGTCCACCATGATTTGGGTGATGACTTGGATGGTTGTTATGTACAAATGGAACAGGTCCAAGATGCCCAAAATGGTTACTCGGATGTTCCCAACCGTGACCATTTGGGAAAGCCCACCCACCAGCGGGAAAGCCACCAGGAAAATGAGGTGGCCCCGTCACCCACGGTGGCGGCGGTGCATGGTGATGGTTATGTATCCCACGTGAACCGGACGGCTGGTCGGTTTTCTCTCGCGAACCTAACGGCTTTAGGAGGCATCTAA
Homology
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BLAST of CmoCh07G010580 vs. Swiss-Prot
Match: LJ1_HHV6U (Uncharacterized protein LJ1 OS=Human herpesvirus 6A (strain Uganda-1102) GN=LJ1 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.2e-07
Identity = 51/82 (62.20%), Postives = 52/82 (63.41%), Query Frame = 1 

Query: 70  HDNDNDHVRCFVHGLVHVLGHVRGCVRVRVLVLVRGCVRVRVLVLVRVHVRVLVRVHVHV 129
           H   +  VR  V G V V   VR  VRVRV V VR  VRVRV V VRV VRV VRV V V
Sbjct: 128 HGASHSGVRARVGGWVRVRVRVRVRVRVRVRVRVRVRVRVRVRVRVRVRVRVRVRVRVRV 187

Query: 130 LGRVRVRVRVRVHVLVRVLVRV 152
             RVRVRVRVRV V VRV VRV
Sbjct: 188 RVRVRVRVRVRVRVRVRVRVRV 209

The following BLAST results are available for this feature:
BLAST of CmoCh07G010580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LJ1_HHV6U4.2e-0762.20Uncharacterized protein LJ1 OS=Human herpesvirus 6A (strain Uganda-1102) GN=LJ1 ... [more]
BLAST of CmoCh07G010580 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh07G010580 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh07G010580 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G010580.1CmoCh07G010580.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh07G010580Carg13233Silver-seed gourdcarcmoB0795
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G010580Watermelon (97103) v1cmowmB804
CmoCh07G010580Watermelon (97103) v1cmowmB825
CmoCh07G010580Watermelon (97103) v1cmowmB835
CmoCh07G010580Cucurbita pepo (Zucchini)cmocpeB821
CmoCh07G010580Cucurbita pepo (Zucchini)cmocpeB802
CmoCh07G010580Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G010580Cucurbita pepo (Zucchini)cmocpeB832
CmoCh07G010580Bottle gourd (USVL1VR-Ls)cmolsiB771
CmoCh07G010580Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G010580Bottle gourd (USVL1VR-Ls)cmolsiB787
CmoCh07G010580Bottle gourd (USVL1VR-Ls)cmolsiB788
CmoCh07G010580Cucumber (Gy14) v2cgybcmoB418
CmoCh07G010580Cucumber (Gy14) v2cgybcmoB537
CmoCh07G010580Cucumber (Gy14) v2cgybcmoB680
CmoCh07G010580Cucumber (Gy14) v2cgybcmoB842
CmoCh07G010580Melon (DHL92) v3.6.1cmomedB871
CmoCh07G010580Melon (DHL92) v3.6.1cmomedB881
CmoCh07G010580Melon (DHL92) v3.6.1cmomedB887
CmoCh07G010580Silver-seed gourdcarcmoB0228
CmoCh07G010580Silver-seed gourdcarcmoB0757
CmoCh07G010580Silver-seed gourdcarcmoB1344
CmoCh07G010580Cucumber (Chinese Long) v3cmocucB0997
CmoCh07G010580Cucumber (Chinese Long) v3cmocucB0999
CmoCh07G010580Cucumber (Chinese Long) v3cmocucB1015
CmoCh07G010580Cucumber (Chinese Long) v3cmocucB1017
CmoCh07G010580Watermelon (97103) v2cmowmbB867
CmoCh07G010580Watermelon (97103) v2cmowmbB850
CmoCh07G010580Watermelon (97103) v2cmowmbB853
CmoCh07G010580Watermelon (97103) v2cmowmbB873
CmoCh07G010580Wax gourdcmowgoB1046
CmoCh07G010580Wax gourdcmowgoB1052
CmoCh07G010580Cucurbita moschata (Rifu)cmocmoB228
CmoCh07G010580Cucurbita moschata (Rifu)cmocmoB460
CmoCh07G010580Cucurbita moschata (Rifu)cmocmoB478
CmoCh07G010580Cucurbita moschata (Rifu)cmocmoB479
CmoCh07G010580Cucurbita moschata (Rifu)cmocmoB483
CmoCh07G010580Cucumber (Gy14) v1cgycmoB0102
CmoCh07G010580Cucumber (Gy14) v1cgycmoB0375
CmoCh07G010580Cucumber (Gy14) v1cgycmoB0508
CmoCh07G010580Cucurbita maxima (Rimu)cmacmoB275
CmoCh07G010580Cucurbita maxima (Rimu)cmacmoB673
CmoCh07G010580Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G010580Cucurbita maxima (Rimu)cmacmoB836
CmoCh07G010580Wild cucumber (PI 183967)cmocpiB853
CmoCh07G010580Wild cucumber (PI 183967)cmocpiB856
CmoCh07G010580Wild cucumber (PI 183967)cmocpiB872
CmoCh07G010580Cucumber (Chinese Long) v2cmocuB843
CmoCh07G010580Cucumber (Chinese Long) v2cmocuB847
CmoCh07G010580Cucumber (Chinese Long) v2cmocuB864
CmoCh07G010580Melon (DHL92) v3.5.1cmomeB776
CmoCh07G010580Melon (DHL92) v3.5.1cmomeB784
CmoCh07G010580Watermelon (Charleston Gray)cmowcgB752
CmoCh07G010580Watermelon (Charleston Gray)cmowcgB769