CmoCh07G009680 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G009680
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionATP synthase epsilon chain, chloroplastic
LocationCmo_Chr07 : 4738701 .. 4739720 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGAAGAAGAAAGCTTAAACCTTTTCCTGATGGAACTCGGCTGGCTCGGGTGGAACTATTCTTTCACTTGGTAACTAGGCTGGATTGGCTGGCTGATCTGCTCCTGAACGGGAACCAGCACCTGACCCGGAACCAGAACCTGACGAGAATGAAAGAAGGTAGAGACTCACCAAGCAAGCAAGAATGAGACTGCCCAGGAAGTCAAGGCTTAACCCTTTTCCTATCCGAGTTTACAAGAAGGCCGGTTGGTTTCATTATCACAAGGCTGCTCCAAAATTGGCTTGGTTCCAAGATGTAGAGAATTTAGACTATTACGACGGGAACTCATTATTATTATATCCCTATATCATGATGTCCTTTCCAATGCCTGGGGTTAAACCTGTTTGGCATGGTAACTTACAAAGAGGATGACGACGAGAACGAAGGAAGAGGATTGAATGAAAGAATAAATGGGTGACGGGTCAGGTCTCATCCAGCTGCCTTACCGAGGTCAAGAATAAAGAGGAAGGAAATAGAGTGGAAGGGGGAACCCACGGGTTTTTAAGATTTTCTATACCCATGTTTCCCGCTTCTGGTGGCAACATGCTATGGGGTGGCGGTCCCGCTTATGGGGTCAAATCAATACGTTCGAAGAAGAAAGATTGGAATATCAATCTCAATCCCATCGGAGACTGACCTAGCTGCAACAGATATTGTTCAGGTCTTACCTGAGAGAGAATATTGTAACGGCACTGGTTGAACCTGCTGTTTAGCCTGAGGCTCTTTGAAGTTGCTGCGGTTGAAGTGGAGTCTGCTCCGAAAGGGAACGAGGACTAAAGTGCTCTCTGAACGTGAAAGTGGTTTTCCTGCTGGGAAAGTCTTCGGAGCAGCCGCGACACGAAGTTCCCTTACCCTTCCGGTCACTATTTTAGTAAATGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCGGAAGCTAACTTGAGGAAAGCTCAGGGCAATCTGGCTTAG

mRNA sequence

ATGAGAAGAAGAAGAAAGCTTAAACCTTTTCCTGATGGAACTCGGCTGGCTCGGGTGGAACTATTCTTTCACTTGGTAACTAGGCTGGATTGGCTGGCTGATCTGCTCCTGAACGGGAACCAGCACCTGACCCGGAACCAGAACCTGACGAGAATGAAAGAAGCCGCGACACGAAGTTCCCTTACCCTTCCGGTCACTATTTTAGTAAATGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCGGAAGCTAACTTGAGGAAAGCTCAGGGCAATCTGGCTTAG

Coding sequence (CDS)

ATGAGAAGAAGAAGAAAGCTTAAACCTTTTCCTGATGGAACTCGGCTGGCTCGGGTGGAACTATTCTTTCACTTGGTAACTAGGCTGGATTGGCTGGCTGATCTGCTCCTGAACGGGAACCAGCACCTGACCCGGAACCAGAACCTGACGAGAATGAAAGAAGCCGCGACACGAAGTTCCCTTACCCTTCCGGTCACTATTTTAGTAAATGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCGGAAGCTAACTTGAGGAAAGCTCAGGGCAATCTGGCTTAG
Homology
[Close]
BLAST of CmoCh07G009680 vs. Swiss-Prot
Match: ATPE_CUCSA (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus GN=atpE PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-10
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 65  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 100
           VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG
Sbjct: 76  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 110

[Close]
BLAST of CmoCh07G009680 vs. Swiss-Prot
Match: ATPE_POPAL (ATP synthase epsilon chain, chloroplastic OS=Populus alba GN=atpE PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-09
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1 

Query: 65  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 100
           VT+LVNDAEK SDIDPQEAQQTLEIAEANLRKA+G
Sbjct: 74  VTVLVNDAEKGSDIDPQEAQQTLEIAEANLRKAEG 108

[Close]
BLAST of CmoCh07G009680 vs. Swiss-Prot
Match: ATPE_ARATH (ATP synthase epsilon chain, chloroplastic OS=Arabidopsis thaliana GN=atpE PE=1 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-09
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1 

Query: 65  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 100
           +TILVNDAEK SDIDPQEAQQTLEIAEANLRKA+G
Sbjct: 74  ITILVNDAEKNSDIDPQEAQQTLEIAEANLRKAEG 108

[Close]
BLAST of CmoCh07G009680 vs. Swiss-Prot
Match: ATPE_SPIOL (ATP synthase epsilon chain, chloroplastic OS=Spinacia oleracea GN=atpE PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-09
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 1 

Query: 65  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 100
           +TILVNDAE+ SDIDPQEAQQTLEIAEANLRKA+G
Sbjct: 74  ITILVNDAERGSDIDPQEAQQTLEIAEANLRKAEG 108

[Close]
BLAST of CmoCh07G009680 vs. Swiss-Prot
Match: ATPE_JASNU (ATP synthase epsilon chain, chloroplastic OS=Jasminum nudiflorum GN=atpE PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-09
Identity = 30/35 (85.71%), Postives = 34/35 (97.14%), Query Frame = 1 

Query: 65  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 100
           +T+LVNDAE+ SDIDPQEAQQTLEIAEANLRKA+G
Sbjct: 74  ITVLVNDAERGSDIDPQEAQQTLEIAEANLRKAEG 108

[Close]
BLAST of CmoCh07G009680 vs. TrEMBL
Match: X2EZM8_LAGSI (ATP synthase epsilon chain, chloroplastic OS=Lagenaria siceraria GN=atpE PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-08
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 65  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 100
           VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG
Sbjct: 76  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 110

[Close]
BLAST of CmoCh07G009680 vs. TrEMBL
Match: A0A0S2IFK5_9ROSI (AtpE OS=Cucurbita okeechobeensis GN=atpE PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-08
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 65  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 100
           VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG
Sbjct: 76  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 110

[Close]
BLAST of CmoCh07G009680 vs. TrEMBL
Match: A0A0S2IDX1_9ROSI (AtpE OS=Cucurbita argyrosperma GN=atpE PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-08
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 65  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 100
           VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG
Sbjct: 76  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 110

[Close]
BLAST of CmoCh07G009680 vs. TrEMBL
Match: Q330P9_CUCSA (ATP synthase epsilon chain, chloroplastic (Fragment) OS=Cucumis sativus GN=atpB PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-08
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 65  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 100
           VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG
Sbjct: 76  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 110

[Close]
BLAST of CmoCh07G009680 vs. TrEMBL
Match: A0A0S2IH62_9ROSI (AtpE OS=Cucurbita pedatifolia GN=atpE PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-08
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 65  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 100
           VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG
Sbjct: 76  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 110

[Close]
BLAST of CmoCh07G009680 vs. TAIR10
Match: ATCG00470.1 (ATCG00470.1 ATP synthase epsilon chain)

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-10
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1 

Query: 65  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 100
           +TILVNDAEK SDIDPQEAQQTLEIAEANLRKA+G
Sbjct: 74  ITILVNDAEKNSDIDPQEAQQTLEIAEANLRKAEG 108

[Close]
BLAST of CmoCh07G009680 vs. NCBI nr
Match: gi|952954489|gb|ALO21851.1| (AtpE (plastid) [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.0 bits (162), Expect = 2.2e-08
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 65  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 100
           VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG
Sbjct: 76  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 110

[Close]
BLAST of CmoCh07G009680 vs. NCBI nr
Match: gi|68164809|ref|YP_247605.1| (ATP synthase CF1 epsilon subunit [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 2.2e-08
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 65  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 100
           VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG
Sbjct: 76  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 110

[Close]
BLAST of CmoCh07G009680 vs. NCBI nr
Match: gi|37725745|gb|AAO38180.1| (ATP synthase epsilon subunit [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 2.2e-08
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 65  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 100
           VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG
Sbjct: 76  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 110

[Close]
BLAST of CmoCh07G009680 vs. NCBI nr
Match: gi|952954676|gb|ALO22035.1| (AtpE (plastid) [Cucurbita ecuadorensis])

HSP 1 Score: 67.0 bits (162), Expect = 2.2e-08
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 65  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 100
           VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG
Sbjct: 76  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 110

[Close]
BLAST of CmoCh07G009680 vs. NCBI nr
Match: gi|952954770|gb|ALO22128.1| (AtpE (plastid) [Cucurbita ficifolia])

HSP 1 Score: 67.0 bits (162), Expect = 2.2e-08
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 65  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 100
           VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG
Sbjct: 78  VTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG 112

The following BLAST results are available for this feature:
BLAST of CmoCh07G009680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATPE_CUCSA1.4e-10100.00ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus GN=atpE PE=3 SV=1[more]
ATPE_POPAL1.1e-0991.43ATP synthase epsilon chain, chloroplastic OS=Populus alba GN=atpE PE=3 SV=1[more]
ATPE_ARATH2.0e-0991.43ATP synthase epsilon chain, chloroplastic OS=Arabidopsis thaliana GN=atpE PE=1 S... [more]
ATPE_SPIOL2.6e-0988.57ATP synthase epsilon chain, chloroplastic OS=Spinacia oleracea GN=atpE PE=1 SV=1[more]
ATPE_JASNU3.3e-0985.71ATP synthase epsilon chain, chloroplastic OS=Jasminum nudiflorum GN=atpE PE=3 SV... [more]
BLAST of CmoCh07G009680 vs. TrEMBL
Match NameE-valueIdentityDescription
X2EZM8_LAGSI1.5e-08100.00ATP synthase epsilon chain, chloroplastic OS=Lagenaria siceraria GN=atpE PE=3 SV... [more]
A0A0S2IFK5_9ROSI1.5e-08100.00AtpE OS=Cucurbita okeechobeensis GN=atpE PE=3 SV=1[more]
A0A0S2IDX1_9ROSI1.5e-08100.00AtpE OS=Cucurbita argyrosperma GN=atpE PE=3 SV=1[more]
Q330P9_CUCSA1.5e-08100.00ATP synthase epsilon chain, chloroplastic (Fragment) OS=Cucumis sativus GN=atpB ... [more]
A0A0S2IH62_9ROSI1.5e-08100.00AtpE OS=Cucurbita pedatifolia GN=atpE PE=3 SV=1[more]
BLAST of CmoCh07G009680 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00470.11.1e-1091.43ATCG00470.1 ATP synthase epsilon chain[more]
BLAST of CmoCh07G009680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|952954489|gb|ALO21851.1|2.2e-08100.00AtpE (plastid) [Cucurbita argyrosperma subsp. sororia][more]
gi|68164809|ref|YP_247605.1|2.2e-08100.00ATP synthase CF1 epsilon subunit [Cucumis sativus][more]
gi|37725745|gb|AAO38180.1|2.2e-08100.00ATP synthase epsilon subunit [Cucumis sativus][more]
gi|952954676|gb|ALO22035.1|2.2e-08100.00AtpE (plastid) [Cucurbita ecuadorensis][more]
gi|952954770|gb|ALO22128.1|2.2e-08100.00AtpE (plastid) [Cucurbita ficifolia][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001469ATP_synth_F1_dsu/esu
Vocabulary: Cellular Component
TermDefinition
GO:0045261proton-transporting ATP synthase complex, catalytic core F(1)
Vocabulary: Molecular Function
TermDefinition
GO:0046933proton-transporting ATP synthase activity, rotational mechanism
GO:0046961proton-transporting ATPase activity, rotational mechanism
Vocabulary: Biological Process
TermDefinition
GO:0015986ATP synthesis coupled proton transport
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0006119 oxidative phosphorylation
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function GO:0005524 ATP binding
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G009680.1CmoCh07G009680.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001469ATPase, F1 complex, delta/epsilon subunitPANTHERPTHR13822ATP SYNTHASE DELTA/EPSILON CHAINcoord: 65..99
score: 3.0
NoneNo IPR availableunknownCoilCoilcoord: 87..102
scor
NoneNo IPR availablePANTHERPTHR13822:SF8ATP SYNTHASE EPSILON CHAIN, CHLOROPLASTICcoord: 65..99
score: 3.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G009680Cucurbita moschata (Rifu)cmocmoB228
CmoCh07G009680Cucurbita moschata (Rifu)cmocmoB425
CmoCh07G009680Cucurbita moschata (Rifu)cmocmoB455
CmoCh07G009680Cucurbita moschata (Rifu)cmocmoB476
CmoCh07G009680Cucurbita moschata (Rifu)cmocmoB483
CmoCh07G009680Cucumber (Gy14) v1cgycmoB0326
CmoCh07G009680Cucumber (Gy14) v1cgycmoB0845
CmoCh07G009680Cucumber (Gy14) v1cgycmoB1071
CmoCh07G009680Cucurbita maxima (Rimu)cmacmoB275
CmoCh07G009680Cucurbita maxima (Rimu)cmacmoB667
CmoCh07G009680Cucurbita maxima (Rimu)cmacmoB752
CmoCh07G009680Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G009680Cucurbita maxima (Rimu)cmacmoB836
CmoCh07G009680Wild cucumber (PI 183967)cmocpiB853
CmoCh07G009680Wild cucumber (PI 183967)cmocpiB874
CmoCh07G009680Cucumber (Chinese Long) v2cmocuB843
CmoCh07G009680Cucumber (Chinese Long) v2cmocuB865
CmoCh07G009680Melon (DHL92) v3.5.1cmomeB776
CmoCh07G009680Melon (DHL92) v3.5.1cmomeB784
CmoCh07G009680Watermelon (Charleston Gray)cmowcgB752
CmoCh07G009680Watermelon (Charleston Gray)cmowcgB769
CmoCh07G009680Watermelon (97103) v1cmowmB804
CmoCh07G009680Watermelon (97103) v1cmowmB825
CmoCh07G009680Watermelon (97103) v1cmowmB832
CmoCh07G009680Cucurbita pepo (Zucchini)cmocpeB821
CmoCh07G009680Cucurbita pepo (Zucchini)cmocpeB806
CmoCh07G009680Cucurbita pepo (Zucchini)cmocpeB812
CmoCh07G009680Cucurbita pepo (Zucchini)cmocpeB814
CmoCh07G009680Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G009680Bottle gourd (USVL1VR-Ls)cmolsiB773
CmoCh07G009680Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G009680Bottle gourd (USVL1VR-Ls)cmolsiB787
CmoCh07G009680Cucumber (Gy14) v2cgybcmoB418
CmoCh07G009680Cucumber (Gy14) v2cgybcmoB844
CmoCh07G009680Cucumber (Gy14) v2cgybcmoB843
CmoCh07G009680Melon (DHL92) v3.6.1cmomedB873
CmoCh07G009680Melon (DHL92) v3.6.1cmomedB881
CmoCh07G009680Melon (DHL92) v3.6.1cmomedB887
CmoCh07G009680Silver-seed gourdcarcmoB0228
CmoCh07G009680Silver-seed gourdcarcmoB0469
CmoCh07G009680Silver-seed gourdcarcmoB0566
CmoCh07G009680Silver-seed gourdcarcmoB0941
CmoCh07G009680Cucumber (Chinese Long) v3cmocucB0997
CmoCh07G009680Cucumber (Chinese Long) v3cmocucB1020
CmoCh07G009680Cucumber (Chinese Long) v3cmocucB1021
CmoCh07G009680Watermelon (97103) v2cmowmbB867
CmoCh07G009680Watermelon (97103) v2cmowmbB850
CmoCh07G009680Watermelon (97103) v2cmowmbB854
CmoCh07G009680Wax gourdcmowgoB1037
CmoCh07G009680Wax gourdcmowgoB1049