CmoCh07G008330 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G008330
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSWIM zinc finger family protein
LocationCmo_Chr07 : 3890494 .. 3890829 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCACTGAGTTGCATTCGACCTATTGGCTAGATCTCTATGCTGATGAAAGTGACTCGTTTCAAAATGTCAAGGATGAGTATATTTCTTCTACTTCTTGGCACCGTGCTTTGCAAATTCCGGATTCTTCAGTTACCATGGATGACAAGAATCACCTTTTTGCCGAAGTTTTGAGCCAAAAGGACAGCAGTGTTTCACATGTAGTGTGGAATCCAGGGTCAGAATTCTCATTTTGTGCTTGTTCTTGGTCAATGCAACGAAATCTTTGCAAACACGTGATCATTGTCCAAGTTACAAACCTTCCTTATCTTTTCAATCATTTGAGAAGATATTGA

mRNA sequence

ATGACCACTGAGTTGCATTCGACCTATTGGCTAGATCTCTATGCTGATGAAAGTGACTCGTTTCAAAATGTCAAGGATGAGTATATTTCTTCTACTTCTTGGCACCGTGCTTTGCAAATTCCGGATTCTTCAGTTACCATGGATGACAAGAATCACCTTTTTGCCGAAGTTTTGAGCCAAAAGGACAGCAGTGTTTCACATGTAGTGTGGAATCCAGGGTCAGAATTCTCATTTTGTGCTTGTTCTTGGTCAATGCAACGAAATCTTTGCAAACACGTGATCATTGTCCAAGTTACAAACCTTCCTTATCTTTTCAATCATTTGAGAAGATATTGA

Coding sequence (CDS)

ATGACCACTGAGTTGCATTCGACCTATTGGCTAGATCTCTATGCTGATGAAAGTGACTCGTTTCAAAATGTCAAGGATGAGTATATTTCTTCTACTTCTTGGCACCGTGCTTTGCAAATTCCGGATTCTTCAGTTACCATGGATGACAAGAATCACCTTTTTGCCGAAGTTTTGAGCCAAAAGGACAGCAGTGTTTCACATGTAGTGTGGAATCCAGGGTCAGAATTCTCATTTTGTGCTTGTTCTTGGTCAATGCAACGAAATCTTTGCAAACACGTGATCATTGTCCAAGTTACAAACCTTCCTTATCTTTTCAATCATTTGAGAAGATATTGA
Homology
[Close]
BLAST of CmoCh07G008330 vs. TrEMBL
Match: A0A0A0KIZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483290 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.4e-44
Identity = 85/98 (86.73%), Postives = 93/98 (94.90%), Query Frame = 1 

Query: 1   MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQ 60
           +TTELHSTYWLD YADESDSFQNVK+EYISSTSWHRALQIPDSSVT+DD+NHLFA+VLSQ
Sbjct: 506 LTTELHSTYWLDRYADESDSFQNVKEEYISSTSWHRALQIPDSSVTLDDENHLFAKVLSQ 565

Query: 61  KDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV 99
           KD+S+SHVVWNPGSEFSFC CSWSMQ NLCKHVI V +
Sbjct: 566 KDTSISHVVWNPGSEFSFCDCSWSMQGNLCKHVIKVNM 603

[Close]
BLAST of CmoCh07G008330 vs. TrEMBL
Match: A0A0B2PXY0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_025007 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.8e-40
Identity = 75/98 (76.53%), Postives = 92/98 (93.88%), Query Frame = 1 

Query: 1   MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQ 60
           +TTELHS+YWLD YADESDSFQNVK++YI+STSWHRALQIPD +V++DDK+HLFA+V+SQ
Sbjct: 506 LTTELHSSYWLDRYADESDSFQNVKEKYIASTSWHRALQIPDYAVSLDDKDHLFAKVVSQ 565

Query: 61  KDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV 99
           KDSS++H+VWNPGSEF+FC CSWSMQ NLCKHV+ V +
Sbjct: 566 KDSSLTHIVWNPGSEFAFCDCSWSMQGNLCKHVVKVNM 603

[Close]
BLAST of CmoCh07G008330 vs. TrEMBL
Match: A0A0R0FAQ6_SOYBN (Uncharacterized protein (Fragment) OS=Glycine max GN=GLYMA_18G1821002 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.8e-40
Identity = 75/98 (76.53%), Postives = 92/98 (93.88%), Query Frame = 1 

Query: 1   MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQ 60
           +TTELHS+YWLD YADESDSFQNVK++YI+STSWHRALQIPD +V++DDK+HLFA+V+SQ
Sbjct: 416 LTTELHSSYWLDRYADESDSFQNVKEKYIASTSWHRALQIPDYAVSLDDKDHLFAKVVSQ 475

Query: 61  KDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV 99
           KDSS++H+VWNPGSEF+FC CSWSMQ NLCKHV+ V +
Sbjct: 476 KDSSLTHIVWNPGSEFAFCDCSWSMQGNLCKHVVKVNM 513

[Close]
BLAST of CmoCh07G008330 vs. TrEMBL
Match: A0A0B2Q6J4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_010645 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.8e-40
Identity = 75/98 (76.53%), Postives = 92/98 (93.88%), Query Frame = 1 

Query: 1   MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQ 60
           +TTELHS+YWLD YADESDSFQNVK++YI+STSWHRALQIPD +V++DDK+HLFA+V+SQ
Sbjct: 506 LTTELHSSYWLDRYADESDSFQNVKEKYIASTSWHRALQIPDYAVSLDDKDHLFAKVVSQ 565

Query: 61  KDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV 99
           KDSS++H+VWNPGSEF+FC CSWSMQ NLCKHV+ V +
Sbjct: 566 KDSSLTHIVWNPGSEFAFCDCSWSMQGNLCKHVVKVNM 603

[Close]
BLAST of CmoCh07G008330 vs. TrEMBL
Match: K7MT44_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.8e-40
Identity = 75/98 (76.53%), Postives = 92/98 (93.88%), Query Frame = 1 

Query: 1   MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQ 60
           +TTELHS+YWLD YADESDSFQNVK++YI+STSWHRALQIPD +V++DDK+HLFA+V+SQ
Sbjct: 506 LTTELHSSYWLDRYADESDSFQNVKEKYIASTSWHRALQIPDYAVSLDDKDHLFAKVVSQ 565

Query: 61  KDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV 99
           KDSS++H+VWNPGSEF+FC CSWSMQ NLCKHV+ V +
Sbjct: 566 KDSSLTHIVWNPGSEFAFCDCSWSMQGNLCKHVVKVNM 603

[Close]
BLAST of CmoCh07G008330 vs. TAIR10
Match: AT1G60560.1 (AT1G60560.1 SWIM zinc finger family protein)

HSP 1 Score: 157.1 bits (396), Expect = 6.1e-39
Identity = 69/96 (71.88%), Postives = 86/96 (89.58%), Query Frame = 1 

Query: 1   MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQ 60
           +TTELHS+YWLD YADESDSFQNVK+EYI+STSW+RA++IPDS+VT+D+ N L A+V SQ
Sbjct: 506 LTTELHSSYWLDRYADESDSFQNVKEEYIASTSWYRAMEIPDSAVTLDENNILLAKVQSQ 565

Query: 61  KDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIV 97
           +DS V+ VVWNPGSEF+FC C+WS+Q NLCKH+I V
Sbjct: 566 RDSDVTRVVWNPGSEFAFCDCTWSLQGNLCKHIIKV 601

[Close]
BLAST of CmoCh07G008330 vs. TAIR10
Match: AT4G13970.1 (AT4G13970.1 zinc ion binding)

HSP 1 Score: 82.4 bits (202), Expect = 1.9e-16
Identity = 38/93 (40.86%), Postives = 62/93 (66.67%), Query Frame = 1 

Query: 3   TELHSTYWLDLYADESDSFQNVKDEYISS-TSWHRALQIPDSSVTMDDKNHLFAEVLSQK 62
           T++HS +WLD Y+ + +  +  K+E++S  TS+ +AL IPDS V +   +   A++  + 
Sbjct: 509 TKVHSYFWLDEYSGKDNFARYWKEEWVSGLTSFRKALSIPDSDVVISGMS---AKITDEC 568

Query: 63  DSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVI 95
           D +  HVVWNPGS+F  C+CSW+ +  +CKH+I
Sbjct: 569 DGNEIHVVWNPGSQFGVCSCSWAEKGYICKHMI 598

[Close]
BLAST of CmoCh07G008330 vs. NCBI nr
Match: gi|449461861|ref|XP_004148660.1| (PREDICTED: uncharacterized protein LOC101204643 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 3.5e-44
Identity = 85/98 (86.73%), Postives = 93/98 (94.90%), Query Frame = 1 

Query: 1   MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQ 60
           +TTELHSTYWLD YADESDSFQNVK+EYISSTSWHRALQIPDSSVT+DD+NHLFA+VLSQ
Sbjct: 506 LTTELHSTYWLDRYADESDSFQNVKEEYISSTSWHRALQIPDSSVTLDDENHLFAKVLSQ 565

Query: 61  KDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV 99
           KD+S+SHVVWNPGSEFSFC CSWSMQ NLCKHVI V +
Sbjct: 566 KDTSISHVVWNPGSEFSFCDCSWSMQGNLCKHVIKVNM 603

[Close]
BLAST of CmoCh07G008330 vs. NCBI nr
Match: gi|659080934|ref|XP_008441058.1| (PREDICTED: uncharacterized protein LOC103485285 [Cucumis melo])

HSP 1 Score: 184.5 bits (467), Expect = 1.0e-43
Identity = 84/98 (85.71%), Postives = 93/98 (94.90%), Query Frame = 1 

Query: 1   MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQ 60
           +TTELHSTYWLD YADESDSFQNVK+EYISSTSWHRALQIPDSSVT+D++NHLFA+VLSQ
Sbjct: 506 LTTELHSTYWLDRYADESDSFQNVKEEYISSTSWHRALQIPDSSVTLDEENHLFAKVLSQ 565

Query: 61  KDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV 99
           KD+S+SHVVWNPGSEFSFC CSWSMQ NLCKHVI V +
Sbjct: 566 KDTSISHVVWNPGSEFSFCDCSWSMQGNLCKHVIKVNM 603

[Close]
BLAST of CmoCh07G008330 vs. NCBI nr
Match: gi|719965146|ref|XP_010255617.1| (PREDICTED: uncharacterized protein LOC104596236 [Nelumbo nucifera])

HSP 1 Score: 175.3 bits (443), Expect = 6.1e-41
Identity = 78/98 (79.59%), Postives = 90/98 (91.84%), Query Frame = 1 

Query: 1   MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQ 60
           +TTELHS+YWLD YADESDSFQNVK+EYI+STSWHRALQIPD++VT+DDK HLFA+V+SQ
Sbjct: 506 LTTELHSSYWLDRYADESDSFQNVKEEYIASTSWHRALQIPDAAVTLDDKEHLFAKVVSQ 565

Query: 61  KDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV 99
           KDSS SH++WNPGSEFSFC C WSMQ NLCKHVI V +
Sbjct: 566 KDSSQSHLIWNPGSEFSFCDCEWSMQGNLCKHVIKVNM 603

[Close]
BLAST of CmoCh07G008330 vs. NCBI nr
Match: gi|947050430|gb|KRG99958.1| (hypothetical protein GLYMA_18G1821002, partial [Glycine max])

HSP 1 Score: 172.6 bits (436), Expect = 4.0e-40
Identity = 75/98 (76.53%), Postives = 92/98 (93.88%), Query Frame = 1 

Query: 1   MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQ 60
           +TTELHS+YWLD YADESDSFQNVK++YI+STSWHRALQIPD +V++DDK+HLFA+V+SQ
Sbjct: 416 LTTELHSSYWLDRYADESDSFQNVKEKYIASTSWHRALQIPDYAVSLDDKDHLFAKVVSQ 475

Query: 61  KDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV 99
           KDSS++H+VWNPGSEF+FC CSWSMQ NLCKHV+ V +
Sbjct: 476 KDSSLTHIVWNPGSEFAFCDCSWSMQGNLCKHVVKVNM 513

[Close]
BLAST of CmoCh07G008330 vs. NCBI nr
Match: gi|571508521|ref|XP_006596000.1| (PREDICTED: uncharacterized protein LOC100809744 [Glycine max])

HSP 1 Score: 172.6 bits (436), Expect = 4.0e-40
Identity = 75/98 (76.53%), Postives = 92/98 (93.88%), Query Frame = 1 

Query: 1   MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQ 60
           +TTELHS+YWLD YADESDSFQNVK++YI+STSWHRALQIPD +V++DDK+HLFA+V+SQ
Sbjct: 506 LTTELHSSYWLDRYADESDSFQNVKEKYIASTSWHRALQIPDYAVSLDDKDHLFAKVVSQ 565

Query: 61  KDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV 99
           KDSS++H+VWNPGSEF+FC CSWSMQ NLCKHV+ V +
Sbjct: 566 KDSSLTHIVWNPGSEFAFCDCSWSMQGNLCKHVVKVNM 603

The following BLAST results are available for this feature:
BLAST of CmoCh07G008330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh07G008330 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIZ0_CUCSA2.4e-4486.73Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483290 PE=4 SV=1[more]
A0A0B2PXY0_GLYSO2.8e-4076.53Uncharacterized protein OS=Glycine soja GN=glysoja_025007 PE=4 SV=1[more]
A0A0R0FAQ6_SOYBN2.8e-4076.53Uncharacterized protein (Fragment) OS=Glycine max GN=GLYMA_18G1821002 PE=4 SV=1[more]
A0A0B2Q6J4_GLYSO2.8e-4076.53Uncharacterized protein OS=Glycine soja GN=glysoja_010645 PE=4 SV=1[more]
K7MT44_SOYBN2.8e-4076.53Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
BLAST of CmoCh07G008330 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G60560.16.1e-3971.88 SWIM zinc finger family protein[more]
AT4G13970.11.9e-1640.86 zinc ion binding[more]
BLAST of CmoCh07G008330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449461861|ref|XP_004148660.1|3.5e-4486.73PREDICTED: uncharacterized protein LOC101204643 [Cucumis sativus][more]
gi|659080934|ref|XP_008441058.1|1.0e-4385.71PREDICTED: uncharacterized protein LOC103485285 [Cucumis melo][more]
gi|719965146|ref|XP_010255617.1|6.1e-4179.59PREDICTED: uncharacterized protein LOC104596236 [Nelumbo nucifera][more]
gi|947050430|gb|KRG99958.1|4.0e-4076.53hypothetical protein GLYMA_18G1821002, partial [Glycine max][more]
gi|571508521|ref|XP_006596000.1|4.0e-4076.53PREDICTED: uncharacterized protein LOC100809744 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G008330.1CmoCh07G008330.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33977FAMILY NOT NAMEDcoord: 1..96
score: 1.0
NoneNo IPR availablePANTHERPTHR33977:SF2SUBFAMILY NOT NAMEDcoord: 1..96
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh07G008330Cucsa.100870Cucumber (Gy14) v1cgycmoB0233
CmoCh07G008330CmaCh03G011000Cucurbita maxima (Rimu)cmacmoB667
CmoCh07G008330Cla008428Watermelon (97103) v1cmowmB814
CmoCh07G008330Csa6G483290Cucumber (Chinese Long) v2cmocuB865
CmoCh07G008330MELO3C008061Melon (DHL92) v3.5.1cmomeB783
CmoCh07G008330ClCG01G015370Watermelon (Charleston Gray)cmowcgB755
CmoCh07G008330CSPI06G26380Wild cucumber (PI 183967)cmocpiB873
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G008330Cucurbita moschata (Rifu)cmocmoB455
CmoCh07G008330Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G008330Cucurbita pepo (Zucchini)cmocpeB806
CmoCh07G008330Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G008330Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G008330Cucumber (Gy14) v2cgybcmoB843
CmoCh07G008330Silver-seed gourdcarcmoB0338
CmoCh07G008330Silver-seed gourdcarcmoB1100
CmoCh07G008330Watermelon (97103) v2cmowmbB849
CmoCh07G008330Wax gourdcmowgoB1066