CmoCh07G008320 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G008320
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSWIM zinc finger protein
LocationCmo_Chr07 : 3889160 .. 3890444 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTGGACCCATCAGATTCTGGATGAAATTCAGAAACTAGTTGAATTGAGTTTTTCAAATGATATAAGCTCTGCGGTAAATAAGCTGCCCTTGAAATGGGGTTCTGGGAAGGGAAGAACCAGTTTTAGGAAGCCATCATCTATCATGGCTGTTCCATCGGTGCCCAATACTGTCAGAAAGGCCATGCGAAGGAACCGGAAAAGGAAAAGATTATCCAGACCAAGATAGTTTGCCCAGCTTGTTTGCTATTTTATTTCCATTGGGCTCTTTTCAATACCTTGATCTCAATTTATATGATTGTTATATAAGATTTGGTGGCTTGTTGAGTAACTTAAGATTGAAGTATGATCATTTTACAAACACACCCAAGATTAACTGGACGTTGCATTTGTTATGGCGTGTAGATCCGTCCACATGGAGGCACCGCTCGAGTCTTGTCATTGAGGTTAGACTTCTTACACCTCTTTGGCCTTCTGCACTACGTTTACATAATTTATGTTTCATCTTTTTCAGATCCTTTAGATACACTTCTATTTTACGAGTTGATGCTTCTGAATTTTGCAGGAATGTGTATATAGTAACTGTTAAATAAGATCAGTTCAAGTACTTGTTCAGTTTAGGTAGCTAGAGTATGAGTAGAATTGTTTAGTTGAGTAGAATTGTTTAGTTGGCAGGCCTGTCAAGGTTACGGTGATTTTGGGTAGTGTAACAGCTCAAGCCCACCGCTAGCAAATATGACCCTTTTTTTAACTTTCTCTTTTAGGCTTCTCCTCAAGGTTTTGAAACGCGTTGAGAGGTTTCTATACCTTTATAAAAAATGTTTCGCTCCCCTCTCTAACCAATGTGGGATCTCCCCCCTTGGAAGCCAGCGTCCTCATTGACACATAACAAGTCAAAATGGACAATATCTACTAGCGGCTTGAGGTGTTGTTATAAGTAAGCACTCCAGAAATTGTACCTCCGATTTTACAATGGCAAATTGCCTAGTTTGTTGCCATCACGTATTGAAGGGAACACAGATCATGTACTAATTAGATATCTGTACTACTTACATTCAATCCGAAAATAAAGTCAAAATGTTTCTAGCCGTGTAAGTTGATTCTTTGATTCAATAACTAGCTCCAGCAAAATGGCATTGATTGATGAAAGTTGTGCCAATATATATGATAATTTTTTCTGCACTTAATTGAACATTTTAATCTTAATCTTAGGCTTAAAAGTTAAAGAAAATTAGTAGTTTTTTTAGTATAATTTTGGAAGTTTTAGAGCCATTCTAGTTTAA

mRNA sequence

ATGGCTTGGACCCATCAGATTCTGGATGAAATTCAGAAACTAGTTGAATTGAGTTTTTCAAATGATATAAGCTCTGCGGTAAATAAGCTGCCCTTGAAATGGGGTTCTGGGAAGGGAAGAACCAGTTTTAGGAAGCCATCATCTATCATGGCTGTTCCATCGGTGCCCAATACTGTCAGAAAGGCCATGCGAAGGAACCGGAAAAGGAAAAGATTATCCAGACCAAGATATTTTAGAGCCATTCTAGTTTAA

Coding sequence (CDS)

ATGGCTTGGACCCATCAGATTCTGGATGAAATTCAGAAACTAGTTGAATTGAGTTTTTCAAATGATATAAGCTCTGCGGTAAATAAGCTGCCCTTGAAATGGGGTTCTGGGAAGGGAAGAACCAGTTTTAGGAAGCCATCATCTATCATGGCTGTTCCATCGGTGCCCAATACTGTCAGAAAGGCCATGCGAAGGAACCGGAAAAGGAAAAGATTATCCAGACCAAGATATTTTAGAGCCATTCTAGTTTAA
Homology
[Close]
BLAST of CmoCh07G008320 vs. TrEMBL
Match: A0A0A0KIZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483290 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-22
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 1 

Query: 1   MAWTHQILDEIQKLVELSFSNDISSAVNKLPLKWGSGKGRTSFRKPSSIMAVPSVPNTVR 60
           MAWTHQILDE+QKLVEL+ SNDISS VNKLPLKW SGKGRTSFRKPSS +  PS  NTV+
Sbjct: 642 MAWTHQILDEVQKLVELNSSNDISSVVNKLPLKWASGKGRTSFRKPSSTIPFPSESNTVK 701

Query: 61  KAM-RRNRKRKRLSRPR 77
           KAM ++N+KRKRLS  R
Sbjct: 702 KAMQKKNQKRKRLSSIR 718

[Close]
BLAST of CmoCh07G008320 vs. TrEMBL
Match: A0A068UM87_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00030045001 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-14
Identity = 44/75 (58.67%), Postives = 56/75 (74.67%), Query Frame = 1 

Query: 2   AWTHQILDEIQKLVELSFSNDISSAVNKLPLKWGSGKGRTSFRKPSSIMAVPSVPNTVRK 61
           AW HQ+LD+IQKLVEL+ S+DIS+ VN +PL+W + KGRTS  KP + +A+PS       
Sbjct: 654 AWAHQMLDQIQKLVELNSSDDISTVVNNMPLRWTTKKGRTSCGKPLTTLALPSCSKNDAA 713

Query: 62  AMRRNRKRKRLSRPR 77
           A +RNRKRKRLSR R
Sbjct: 714 ARKRNRKRKRLSRIR 728

[Close]
BLAST of CmoCh07G008320 vs. TrEMBL
Match: A0A151UBY3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_021011 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.3e-14
Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 1 

Query: 1   MAWTHQILDEIQKLVELSFSNDISSAVNKLPLKWGSGKGRTSFRKPSSIMAVPSVPNTVR 60
           +AWTHQ+LD+IQKLVEL+ S DI + VN +PLKW S KGRT   KPSS +AVP   +  +
Sbjct: 626 LAWTHQMLDQIQKLVELNNSTDIGTVVNNMPLKWVSKKGRTYIGKPSSSLAVPHGSSNTK 685

Query: 61  KAM--RRNRKRKRLSRPR 77
           + +  ++NRKRKRLSR R
Sbjct: 686 RVVVHKKNRKRKRLSRLR 703

[Close]
BLAST of CmoCh07G008320 vs. TrEMBL
Match: A0A0D2TAS8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G223400 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 9.7e-14
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 1 

Query: 1   MAWTHQILDEIQKLVELSFSNDISSAVNKLPLKWGSGKGRTSFRKPSSIMAVPSVPNTVR 60
           +AWTHQ+LD+I++LVEL+ SNDI   VN +PLKW S KGRT    P+S+ A+PS   T+ 
Sbjct: 642 VAWTHQMLDQIKQLVELNSSNDIGIVVNNMPLKWISKKGRTFVGIPASLPALPSDSKTIT 701

Query: 61  KAMRRNRKRKRLSRPR 77
           K ++++RKRKRLSR R
Sbjct: 702 KNVQKSRKRKRLSRLR 717

[Close]
BLAST of CmoCh07G008320 vs. TrEMBL
Match: A5BJL1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043960 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-13
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 1 

Query: 1   MAWTHQILDEIQKLVELSFSNDISSAVNKLPLKWGSGKGRTSFRKPSSIMAVPSVPNTV- 60
           +AWTHQ+LD+IQKLVEL+ +NDI S VN LPLKW S KGRT   +PSS  ++PS   +  
Sbjct: 628 VAWTHQMLDQIQKLVELNSANDIGSVVNNLPLKWVSKKGRTFVGRPSSAPSLPSSSKSKP 687

Query: 61  --RKAMRRNRKRKRLSRPR 77
               A ++NRKRKRLSR R
Sbjct: 688 LDAAARKKNRKRKRLSRLR 706

[Close]
BLAST of CmoCh07G008320 vs. TAIR10
Match: AT1G60560.1 (AT1G60560.1 SWIM zinc finger family protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-09
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 1 

Query: 1   MAWTHQILDEIQKLVELSFSNDISSAVNKLPLKWGSGKGRTSFRKPSSIMAVPSVPNTVR 60
           MA T Q+ D+I++LV LS +NDIS+ VN LP+KWG  KGRT+   P+SI A         
Sbjct: 642 MALTLQMFDQIKQLVRLSGTNDISNIVNDLPVKWGCKKGRTTIGIPASIAAF-------- 701

Query: 61  KAMRRNRKRKR 72
              +R++KRKR
Sbjct: 702 -TKKRSQKRKR 703

[Close]
BLAST of CmoCh07G008320 vs. NCBI nr
Match: gi|659080934|ref|XP_008441058.1| (PREDICTED: uncharacterized protein LOC103485285 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 9.6e-23
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 1 

Query: 1   MAWTHQILDEIQKLVELSFSNDISSAVNKLPLKWGSGKGRTSFRKPSSIMAVPSVPNTVR 60
           MAWTHQILDE+QKLVEL+ SNDISS VNKLPLKW SGKGRTSFRKPSS ++ PS  NTV+
Sbjct: 642 MAWTHQILDEVQKLVELNSSNDISSVVNKLPLKWASGKGRTSFRKPSSTVSFPSESNTVK 701

Query: 61  KAM-RRNRKRKRLS 74
           KAM ++N+KRKRLS
Sbjct: 702 KAMQKKNQKRKRLS 715

[Close]
BLAST of CmoCh07G008320 vs. NCBI nr
Match: gi|449461861|ref|XP_004148660.1| (PREDICTED: uncharacterized protein LOC101204643 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 2.8e-22
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 1 

Query: 1   MAWTHQILDEIQKLVELSFSNDISSAVNKLPLKWGSGKGRTSFRKPSSIMAVPSVPNTVR 60
           MAWTHQILDE+QKLVEL+ SNDISS VNKLPLKW SGKGRTSFRKPSS +  PS  NTV+
Sbjct: 642 MAWTHQILDEVQKLVELNSSNDISSVVNKLPLKWASGKGRTSFRKPSSTIPFPSESNTVK 701

Query: 61  KAM-RRNRKRKRLSRPR 77
           KAM ++N+KRKRLS  R
Sbjct: 702 KAMQKKNQKRKRLSSIR 718

[Close]
BLAST of CmoCh07G008320 vs. NCBI nr
Match: gi|661886696|emb|CDP09645.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-14
Identity = 44/75 (58.67%), Postives = 56/75 (74.67%), Query Frame = 1 

Query: 2   AWTHQILDEIQKLVELSFSNDISSAVNKLPLKWGSGKGRTSFRKPSSIMAVPSVPNTVRK 61
           AW HQ+LD+IQKLVEL+ S+DIS+ VN +PL+W + KGRTS  KP + +A+PS       
Sbjct: 654 AWAHQMLDQIQKLVELNSSDDISTVVNNMPLRWTTKKGRTSCGKPLTTLALPSCSKNDAA 713

Query: 62  AMRRNRKRKRLSRPR 77
           A +RNRKRKRLSR R
Sbjct: 714 ARKRNRKRKRLSRIR 728

[Close]
BLAST of CmoCh07G008320 vs. NCBI nr
Match: gi|1012365576|gb|KYP76758.1| (hypothetical protein KK1_021011 [Cajanus cajan])

HSP 1 Score: 85.5 bits (210), Expect = 4.8e-14
Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 1 

Query: 1   MAWTHQILDEIQKLVELSFSNDISSAVNKLPLKWGSGKGRTSFRKPSSIMAVPSVPNTVR 60
           +AWTHQ+LD+IQKLVEL+ S DI + VN +PLKW S KGRT   KPSS +AVP   +  +
Sbjct: 626 LAWTHQMLDQIQKLVELNNSTDIGTVVNNMPLKWVSKKGRTYIGKPSSSLAVPHGSSNTK 685

Query: 61  KAM--RRNRKRKRLSRPR 77
           + +  ++NRKRKRLSR R
Sbjct: 686 RVVVHKKNRKRKRLSRLR 703

[Close]
BLAST of CmoCh07G008320 vs. NCBI nr
Match: gi|823213070|ref|XP_012439277.1| (PREDICTED: uncharacterized protein LOC105764973 [Gossypium raimondii])

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-13
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 1 

Query: 1   MAWTHQILDEIQKLVELSFSNDISSAVNKLPLKWGSGKGRTSFRKPSSIMAVPSVPNTVR 60
           +AWTHQ+LD+I++LVEL+ SNDI   VN +PLKW S KGRT    P+S+ A+PS   T+ 
Sbjct: 642 VAWTHQMLDQIKQLVELNSSNDIGIVVNNMPLKWISKKGRTFVGIPASLPALPSDSKTIT 701

Query: 61  KAMRRNRKRKRLSRPR 77
           K ++++RKRKRLSR R
Sbjct: 702 KNVQKSRKRKRLSRLR 717

The following BLAST results are available for this feature:
BLAST of CmoCh07G008320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh07G008320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIZ0_CUCSA1.9e-2276.62Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483290 PE=4 SV=1[more]
A0A068UM87_COFCA2.0e-1458.67Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00030045001 PE=4 SV=1[more]
A0A151UBY3_CAJCA3.3e-1457.69Uncharacterized protein OS=Cajanus cajan GN=KK1_021011 PE=4 SV=1[more]
A0A0D2TAS8_GOSRA9.7e-1456.58Uncharacterized protein OS=Gossypium raimondii GN=B456_008G223400 PE=4 SV=1[more]
A5BJL1_VITVI1.7e-1358.23Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043960 PE=4 SV=1[more]
BLAST of CmoCh07G008320 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G60560.12.2e-0947.89 SWIM zinc finger family protein[more]
BLAST of CmoCh07G008320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659080934|ref|XP_008441058.1|9.6e-2378.38PREDICTED: uncharacterized protein LOC103485285 [Cucumis melo][more]
gi|449461861|ref|XP_004148660.1|2.8e-2276.62PREDICTED: uncharacterized protein LOC101204643 [Cucumis sativus][more]
gi|661886696|emb|CDP09645.1|2.8e-1458.67unnamed protein product [Coffea canephora][more]
gi|1012365576|gb|KYP76758.1|4.8e-1457.69hypothetical protein KK1_021011 [Cajanus cajan][more]
gi|823213070|ref|XP_012439277.1|1.4e-1356.58PREDICTED: uncharacterized protein LOC105764973 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G008320.1CmoCh07G008320.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33977FAMILY NOT NAMEDcoord: 1..74
score: 2.7
NoneNo IPR availablePANTHERPTHR33977:SF2SUBFAMILY NOT NAMEDcoord: 1..74
score: 2.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh07G008320Lsi01G011590Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G008320Cp4.1LG10g03640Cucurbita pepo (Zucchini)cmocpeB806
CmoCh07G008320MELO3C008061.2Melon (DHL92) v3.6.1cmomedB890
CmoCh07G008320CsaV3_6G041590Cucumber (Chinese Long) v3cmocucB1019
CmoCh07G008320Cla97C01G014330Watermelon (97103) v2cmowmbB849
CmoCh07G008320Bhi03G001037Wax gourdcmowgoB1066
CmoCh07G008320CsGy6G025870Cucumber (Gy14) v2cgybcmoB843
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G008320Silver-seed gourdcarcmoB0338
CmoCh07G008320Silver-seed gourdcarcmoB1100
CmoCh07G008320Cucurbita moschata (Rifu)cmocmoB455
CmoCh07G008320Cucumber (Gy14) v1cgycmoB0233
CmoCh07G008320Cucurbita maxima (Rimu)cmacmoB667
CmoCh07G008320Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G008320Wild cucumber (PI 183967)cmocpiB873
CmoCh07G008320Watermelon (Charleston Gray)cmowcgB755
CmoCh07G008320Cucumber (Chinese Long) v2cmocuB865
CmoCh07G008320Melon (DHL92) v3.5.1cmomeB783
CmoCh07G008320Watermelon (97103) v1cmowmB814
CmoCh07G008320Cucurbita pepo (Zucchini)cmocpeB817